Wall clock time and date at job start Thu Mar 4 2021 12:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86299 * 1 3 3 C 1.86299 * 110.06156 * 2 1 4 4 C 1.87516 * 110.00263 * 238.63387 * 2 1 3 5 5 C 1.53937 * 106.85168 * 196.90384 * 4 2 1 6 6 C 1.52621 * 109.30828 * 57.20508 * 5 4 2 7 7 N 1.46361 * 111.88893 * 283.47682 * 6 5 4 8 8 C 1.38405 * 111.00036 * 203.19798 * 7 6 5 9 9 N 1.32494 * 119.22088 * 235.38576 * 8 7 6 10 10 C 1.32272 * 120.74414 * 179.75955 * 9 8 7 11 11 C 1.38606 * 119.19379 * 0.50690 * 10 9 8 12 12 C 1.50706 * 120.71767 * 179.72843 * 11 10 9 13 13 O 1.42911 * 109.47056 * 120.01971 * 12 11 10 14 14 Si 1.86296 * 109.47287 * 0.02562 * 12 11 10 15 15 H 1.48501 * 109.47042 * 60.00049 * 14 12 11 16 16 H 1.48505 * 109.46899 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.46962 * 300.00032 * 14 12 11 18 18 C 1.38603 * 118.56259 * 359.74450 * 11 10 9 19 19 N 1.32283 * 119.19111 * 0.02562 * 18 11 10 20 20 C 1.47728 * 111.30335 * 79.02702 * 7 6 5 21 21 H 1.08997 * 109.47162 * 298.63797 * 1 2 3 22 22 H 1.08999 * 109.47251 * 58.63705 * 1 2 3 23 23 H 1.09002 * 109.47408 * 178.64077 * 1 2 3 24 24 H 1.09002 * 109.47103 * 181.36258 * 3 2 1 25 25 H 1.08998 * 109.47316 * 301.35944 * 3 2 1 26 26 H 1.09000 * 109.47117 * 61.36496 * 3 2 1 27 27 H 1.09005 * 109.97949 * 316.23788 * 4 2 1 28 28 H 1.08999 * 109.97732 * 77.48003 * 4 2 1 29 29 H 1.08996 * 109.49595 * 177.15813 * 5 4 2 30 30 H 1.09001 * 109.49152 * 297.22334 * 5 4 2 31 31 H 1.08998 * 108.99468 * 162.86155 * 6 5 4 32 32 H 1.08996 * 109.00311 * 44.10178 * 6 5 4 33 33 H 1.07998 * 120.40684 * 180.27220 * 10 9 8 34 34 H 1.09000 * 109.47096 * 240.01273 * 12 11 10 35 35 H 0.96698 * 113.99252 * 300.00052 * 13 12 11 36 36 H 1.08000 * 120.40412 * 180.02562 * 18 11 10 37 37 H 1.08998 * 109.94867 * 59.06375 * 20 7 6 38 38 H 1.08997 * 109.94285 * 180.22866 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5021 1.7500 0.0000 4 6 2.5044 -0.9172 -1.5045 5 6 3.9816 -1.2502 -1.2279 6 6 4.0830 -2.0637 0.0595 7 7 3.9262 -1.2250 1.2486 8 6 4.5118 -1.8172 2.3540 9 7 3.7825 -2.0207 3.4413 10 6 4.3103 -2.5885 4.5130 11 6 5.6450 -2.9619 4.4924 12 6 6.2829 -3.6059 5.6963 13 8 6.7694 -4.9020 5.3416 14 14 5.0201 -3.7675 7.0564 15 1 3.8904 -4.6085 6.5856 16 1 5.6487 -4.4026 8.2425 17 1 4.5146 -2.4207 7.4250 18 6 6.3802 -2.7299 3.3406 19 7 5.7900 -2.1620 2.3018 20 6 2.5042 -0.9169 1.5043 21 1 -0.3633 0.4925 0.9019 22 1 -0.3634 0.5348 -0.8775 23 1 -0.3634 -1.0274 -0.0244 24 1 3.5917 1.7388 -0.0244 25 1 2.1244 2.2747 -0.8775 26 1 2.1641 2.2602 0.9020 27 1 1.9366 -1.8361 -1.6507 28 1 2.4231 -0.2849 -2.3887 29 1 4.3853 -1.8304 -2.0577 30 1 4.5489 -0.3257 -1.1203 31 1 5.0572 -2.5513 0.0952 32 1 3.3054 -2.8275 0.0588 33 1 3.7097 -2.7557 5.3949 34 1 7.1123 -2.9887 6.0418 35 1 6.0840 -5.5060 5.0245 36 1 7.4223 -3.0094 3.2917 37 1 1.9428 -1.8407 1.6441 38 1 2.4134 -0.2892 2.3908 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_27_15766106_12175864.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 12:46:37 Heat of formation + Delta-G solvation = 1.885828 kcal Electronic energy + Delta-G solvation = -18669.428819 eV Core-core repulsion = 15864.243190 eV Total energy + Delta-G solvation = -2805.185628 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.127 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.42122 -39.18282 -37.71048 -34.96987 -34.28955 -32.28242 -29.35561 -28.34474 -27.97176 -27.32122 -25.63324 -24.95774 -23.04868 -21.75007 -19.27199 -18.88118 -18.04118 -16.78171 -16.38886 -16.27242 -15.99577 -15.88954 -14.96305 -14.78535 -14.51237 -14.40730 -14.28174 -13.98666 -13.79725 -13.50224 -13.20697 -13.17432 -13.08672 -12.90217 -12.31098 -12.22737 -12.10451 -12.02308 -11.89635 -11.74152 -11.34151 -10.78905 -10.77602 -10.57160 -10.29778 -10.15232 -9.38998 -0.27079 -0.01277 1.11765 1.42237 1.47415 1.62244 1.86791 1.88728 1.94315 2.29920 2.57358 2.64818 3.04481 3.44580 3.51122 3.56019 3.65170 3.95925 4.08785 4.10539 4.43355 4.48951 4.56397 4.61481 4.68498 4.74034 4.82569 4.83789 4.85903 4.86949 4.97160 5.07106 5.18046 5.29887 5.46629 5.56555 5.59754 5.66408 5.66843 6.06836 6.63726 7.01403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.455 4.455 2 Si 1.086 2.914 3 C -0.456 4.456 4 C -0.414 4.414 5 C -0.103 4.103 6 C 0.054 3.946 7 N -0.447 5.447 8 C 0.474 3.526 9 N -0.562 5.562 10 C 0.159 3.841 11 C -0.256 4.256 12 C -0.056 4.056 13 O -0.547 6.547 14 Si 0.970 3.030 15 H -0.251 1.251 16 H -0.264 1.264 17 H -0.256 1.256 18 C 0.197 3.803 19 N -0.551 5.551 20 C -0.241 4.241 21 H 0.069 0.931 22 H 0.079 0.921 23 H 0.072 0.928 24 H 0.063 0.937 25 H 0.076 0.924 26 H 0.064 0.936 27 H 0.082 0.918 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.054 0.946 33 H 0.176 0.824 34 H 0.135 0.865 35 H 0.389 0.611 36 H 0.194 0.806 37 H 0.058 0.942 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.725 -1.032 -0.579 2.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.563 4.563 2 Si 1.275 2.725 3 C -0.563 4.563 4 C -0.500 4.500 5 C -0.141 4.141 6 C -0.072 4.072 7 N -0.166 5.166 8 C 0.119 3.881 9 N -0.281 5.281 10 C -0.007 4.007 11 C -0.262 4.262 12 C -0.168 4.168 13 O -0.354 6.354 14 Si 0.794 3.206 15 H -0.175 1.175 16 H -0.189 1.189 17 H -0.181 1.181 18 C 0.030 3.970 19 N -0.269 5.269 20 C -0.411 4.411 21 H 0.089 0.911 22 H 0.098 0.902 23 H 0.091 0.909 24 H 0.082 0.918 25 H 0.095 0.905 26 H 0.083 0.917 27 H 0.101 0.899 28 H 0.109 0.891 29 H 0.101 0.899 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.073 0.927 33 H 0.193 0.807 34 H 0.153 0.847 35 H 0.238 0.762 36 H 0.210 0.790 37 H 0.077 0.923 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.977 0.033 -0.681 2.091 hybrid contribution 0.022 -1.073 0.770 1.321 sum -1.955 -1.040 0.089 2.216 Atomic orbital electron populations 1.26154 1.20294 1.04895 1.04986 0.78463 0.65394 0.65496 0.63154 1.26205 1.06281 1.19412 1.04412 1.26428 0.99928 1.08747 1.14863 1.21262 0.97441 1.00710 0.94652 1.22214 1.02747 0.94159 0.88039 1.58590 1.16877 1.40140 1.01013 1.21726 0.87278 0.87811 0.91284 1.68365 1.39318 1.18402 1.02045 1.23309 0.92733 0.89147 0.95556 1.22055 0.96413 1.07257 1.00460 1.24756 1.07497 0.86064 0.98531 1.86512 1.39314 1.21983 1.87595 0.85374 0.76950 0.80963 0.77318 1.17471 1.18892 1.18055 1.23427 1.00966 0.86705 0.85914 1.68156 1.10260 1.16139 1.32352 1.27845 0.87348 1.07900 1.17983 0.91143 0.90207 0.90896 0.91796 0.90534 0.91688 0.89926 0.89114 0.89867 0.90795 0.90095 0.92747 0.80713 0.84708 0.76212 0.78953 0.92342 0.89880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.79 8.65 113.37 0.98 2.77 16 2 Si 1.09 -4.39 11.99 68.60 0.82 -3.57 16 3 C -0.46 0.52 8.65 113.37 0.98 1.50 16 4 C -0.41 1.66 5.04 72.30 0.36 2.02 16 5 C -0.10 0.12 5.74 30.78 0.18 0.30 16 6 C 0.05 0.13 5.04 86.28 0.44 0.57 16 7 N -0.45 -2.52 4.36 -514.20 -2.24 -4.76 16 8 C 0.47 4.16 7.18 261.49 1.88 6.04 16 9 N -0.56 -4.56 8.73 -197.99 -1.73 -6.29 16 10 C 0.16 0.51 9.92 84.71 0.84 1.35 16 11 C -0.26 -0.13 5.40 -19.69 -0.11 -0.23 16 12 C -0.06 0.21 2.85 71.24 0.20 0.41 16 13 O -0.55 1.49 12.79 -148.98 -1.91 -0.41 16 14 Si 0.97 -3.32 25.15 68.60 1.73 -1.60 16 15 H -0.25 0.79 7.11 99.48 0.71 1.50 16 16 H -0.26 0.06 7.11 99.48 0.71 0.77 16 17 H -0.26 0.50 7.11 99.48 0.71 1.21 16 18 C 0.20 0.55 10.92 84.71 0.93 1.47 16 19 N -0.55 -4.41 9.41 -197.99 -1.86 -6.27 16 20 C -0.24 -0.56 3.58 127.53 0.46 -0.10 16 21 H 0.07 -0.24 7.96 -2.39 -0.02 -0.25 16 22 H 0.08 -0.38 7.96 -2.39 -0.02 -0.40 16 23 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 24 H 0.06 0.08 7.96 -2.39 -0.02 0.06 16 25 H 0.08 -0.20 7.96 -2.39 -0.02 -0.22 16 26 H 0.06 -0.03 7.96 -2.39 -0.02 -0.05 16 27 H 0.08 -0.40 7.99 -2.38 -0.02 -0.42 16 28 H 0.09 -0.49 7.99 -2.39 -0.02 -0.51 16 29 H 0.08 -0.22 8.14 -2.39 -0.02 -0.24 16 30 H 0.07 -0.01 7.96 -2.39 -0.02 -0.03 16 31 H 0.08 0.37 7.07 -2.39 -0.02 0.36 16 32 H 0.05 0.07 7.78 -2.39 -0.02 0.05 16 33 H 0.18 -0.21 5.04 -2.91 -0.01 -0.22 16 34 H 0.14 -0.82 7.96 -2.39 -0.02 -0.84 16 35 H 0.39 -3.28 8.70 -74.06 -0.64 -3.93 16 36 H 0.19 -0.40 8.06 -2.91 -0.02 -0.42 16 37 H 0.06 0.16 7.88 -2.39 -0.02 0.14 16 38 H 0.08 0.37 7.64 -2.39 -0.02 0.35 16 Total: 0.00 -13.33 306.72 3.10 -10.23 By element: Atomic # 1 Polarization: -4.58 SS G_CDS: 1.16 Total: -3.42 kcal Atomic # 6 Polarization: 8.96 SS G_CDS: 7.13 Total: 16.10 kcal Atomic # 7 Polarization: -11.49 SS G_CDS: -5.83 Total: -17.32 kcal Atomic # 8 Polarization: 1.49 SS G_CDS: -1.91 Total: -0.41 kcal Atomic # 14 Polarization: -7.72 SS G_CDS: 2.55 Total: -5.17 kcal Total: -13.33 3.10 -10.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_27_15766106_12175864.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.117 kcal (2) G-P(sol) polarization free energy of solvation -13.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds