Wall clock time and date at job start Thu Mar 4 2021 12:46:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86292 * 1 3 3 C 1.86301 * 109.98720 * 2 1 4 4 C 1.87525 * 110.00481 * 121.31625 * 2 1 3 5 5 C 1.53925 * 106.85010 * 163.09470 * 4 2 1 6 6 C 1.52629 * 109.31473 * 302.79972 * 5 4 2 7 7 N 1.46351 * 111.89018 * 76.52189 * 6 5 4 8 8 C 1.39008 * 110.99804 * 156.80712 * 7 6 5 9 9 C 1.39094 * 119.70646 * 56.06703 * 8 7 6 10 10 C 1.38338 * 119.09590 * 179.72553 * 9 8 7 11 11 C 1.38841 * 118.50666 * 0.51579 * 10 9 8 12 12 C 1.50706 * 120.33392 * 179.73537 * 11 10 9 13 13 O 1.42895 * 109.47147 * 64.72539 * 12 11 10 14 14 Si 1.86299 * 109.46748 * 184.72181 * 12 11 10 15 15 H 1.48503 * 109.47188 * 60.00070 * 14 12 11 16 16 H 1.48506 * 109.47139 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.47505 * 299.99883 * 14 12 11 18 18 C 1.38058 * 119.32775 * 359.45858 * 11 10 9 19 19 N 1.31946 * 120.85683 * 0.30030 * 18 11 10 20 20 C 1.47721 * 111.30612 * 280.97915 * 7 6 5 21 21 H 1.08997 * 109.47340 * 298.68593 * 1 2 3 22 22 H 1.09002 * 109.47226 * 58.68267 * 1 2 3 23 23 H 1.08995 * 109.47393 * 178.68023 * 1 2 3 24 24 H 1.08992 * 109.47412 * 181.31076 * 3 2 1 25 25 H 1.08996 * 109.47669 * 301.31930 * 3 2 1 26 26 H 1.09008 * 109.46581 * 61.31687 * 3 2 1 27 27 H 1.09001 * 109.97106 * 43.76258 * 4 2 1 28 28 H 1.08992 * 110.05240 * 282.47847 * 4 2 1 29 29 H 1.09003 * 109.50028 * 182.84362 * 5 4 2 30 30 H 1.09002 * 109.49745 * 62.75089 * 5 4 2 31 31 H 1.09000 * 108.99506 * 315.89888 * 6 5 4 32 32 H 1.09000 * 108.99614 * 197.14308 * 6 5 4 33 33 H 1.08000 * 120.45048 * 359.97438 * 9 8 7 34 34 H 1.07999 * 120.74847 * 180.24619 * 10 9 8 35 35 H 1.09000 * 109.47318 * 304.71652 * 12 11 10 36 36 H 0.96695 * 114.00385 * 59.99326 * 13 12 11 37 37 H 1.07997 * 119.57643 * 180.27459 * 18 11 10 38 38 H 1.09001 * 109.94960 * 179.68423 * 20 7 6 39 39 H 1.09005 * 109.94743 * 300.94262 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8629 0.0000 0.0000 3 6 2.4997 1.7508 0.0000 4 6 2.5044 -0.9159 1.5054 5 6 3.9815 -1.2491 1.2290 6 6 4.0830 -2.0637 -0.0578 7 7 3.9262 -1.2261 -1.2476 8 6 4.5144 -1.8218 -2.3573 9 6 4.1284 -3.1029 -2.7376 10 6 4.7179 -3.6814 -3.8473 11 6 5.6849 -2.9609 -4.5354 12 6 6.3580 -3.5540 -5.7463 13 8 5.3930 -3.7422 -6.7833 14 14 7.6930 -2.3993 -6.3425 15 1 8.6958 -2.2036 -5.2648 16 1 8.3567 -2.9839 -7.5354 17 1 7.0910 -1.0902 -6.7022 18 6 6.0194 -1.6934 -4.1023 19 7 5.4370 -1.1644 -3.0432 20 6 2.5043 -0.9181 -1.5036 21 1 -0.3634 0.4933 0.9015 22 1 -0.3634 0.5342 -0.8779 23 1 -0.3634 -1.0273 -0.0237 24 1 3.5893 1.7411 -0.0235 25 1 2.1220 2.2749 -0.8779 26 1 2.1603 2.2608 0.9017 27 1 1.9366 -1.8346 1.6522 28 1 2.4244 -0.2837 2.3896 29 1 4.3853 -1.8286 2.0592 30 1 4.5488 -0.3248 1.1201 31 1 3.3054 -2.8275 -0.0565 32 1 5.0572 -2.5514 -0.0931 33 1 3.3758 -3.6369 -2.1766 34 1 4.4355 -4.6731 -4.1687 35 1 6.7999 -4.5147 -5.4824 36 1 4.9585 -2.9270 -7.0689 37 1 6.7679 -1.1276 -4.6372 38 1 2.4135 -0.2898 -2.3897 39 1 1.9428 -1.8421 -1.6425 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_27_15766106_13915762.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 12:46:46 Heat of formation + Delta-G solvation = -23.195212 kcal Electronic energy + Delta-G solvation = -18498.051187 eV Core-core repulsion = 15757.203874 eV Total energy + Delta-G solvation = -2740.847313 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.132 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.71202 -39.02455 -37.57736 -34.16845 -33.48273 -31.56318 -29.41728 -28.41568 -27.68715 -27.12027 -24.98142 -24.53507 -22.76488 -21.48046 -18.75548 -18.28420 -17.60910 -16.69100 -16.54559 -16.16867 -15.94073 -15.26109 -14.91750 -14.73176 -14.55964 -14.22443 -14.10116 -14.01493 -13.84758 -13.58611 -13.43466 -13.25839 -13.14801 -12.90825 -12.58817 -12.24081 -12.05833 -12.01414 -11.99804 -11.01627 -10.89859 -10.85025 -10.65861 -10.52949 -10.39036 -9.88219 -9.31476 -0.10999 0.24733 1.05867 1.37261 1.45081 1.58339 1.80719 1.85446 1.86060 2.50527 2.56356 2.64159 3.34732 3.59851 3.60962 3.83356 3.90345 3.95102 4.11839 4.14629 4.41244 4.44178 4.50215 4.57113 4.63885 4.65939 4.67348 4.69578 4.80320 4.86903 4.91714 4.92373 5.06455 5.10470 5.24079 5.36023 5.38401 5.43908 5.65499 5.87839 6.09697 6.42971 7.05922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.452 4.452 2 Si 1.031 2.969 3 C -0.442 4.442 4 C -0.409 4.409 5 C -0.104 4.104 6 C 0.054 3.946 7 N -0.481 5.481 8 C 0.314 3.686 9 C -0.200 4.200 10 C -0.035 4.035 11 C -0.183 4.183 12 C -0.074 4.074 13 O -0.537 6.537 14 Si 0.942 3.058 15 H -0.246 1.246 16 H -0.249 1.249 17 H -0.248 1.248 18 C 0.109 3.891 19 N -0.461 5.461 20 C -0.233 4.233 21 H 0.073 0.927 22 H 0.070 0.930 23 H 0.068 0.932 24 H 0.077 0.923 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.046 0.954 32 H 0.073 0.927 33 H 0.134 0.866 34 H 0.139 0.861 35 H 0.120 0.880 36 H 0.377 0.623 37 H 0.153 0.847 38 H 0.086 0.914 39 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.548 -0.996 0.952 2.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.560 4.560 2 Si 1.224 2.776 3 C -0.550 4.550 4 C -0.495 4.495 5 C -0.142 4.142 6 C -0.073 4.073 7 N -0.203 5.203 8 C 0.084 3.916 9 C -0.223 4.223 10 C -0.062 4.062 11 C -0.185 4.185 12 C -0.185 4.185 13 O -0.342 6.342 14 Si 0.764 3.236 15 H -0.170 1.170 16 H -0.172 1.172 17 H -0.171 1.171 18 C -0.049 4.049 19 N -0.170 5.170 20 C -0.405 4.405 21 H 0.092 0.908 22 H 0.089 0.911 23 H 0.088 0.912 24 H 0.096 0.904 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.093 0.907 28 H 0.098 0.902 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.065 0.935 32 H 0.092 0.908 33 H 0.152 0.848 34 H 0.157 0.843 35 H 0.138 0.862 36 H 0.224 0.776 37 H 0.170 0.830 38 H 0.105 0.895 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.221 0.219 1.075 1.119 hybrid contribution -1.105 -1.453 -0.405 1.870 sum -1.326 -1.235 0.671 1.932 Atomic orbital electron populations 1.26139 1.20599 1.04516 1.04736 0.79215 0.65608 0.67615 0.65152 1.26015 1.07170 1.17775 1.04078 1.26358 1.00783 1.08067 1.14277 1.21247 0.96544 1.01073 0.95302 1.22070 1.01808 0.94261 0.89132 1.58645 1.14748 1.45968 1.00949 1.19839 0.91578 0.88439 0.91717 1.22648 1.02668 0.97764 0.99182 1.21371 0.92727 0.99747 0.92311 1.21349 1.00566 0.96497 1.00123 1.24881 0.98412 1.08655 0.86582 1.86524 1.57253 1.36741 1.53714 0.85777 0.78067 0.78255 0.81498 1.16953 1.17244 1.17119 1.22575 0.97418 0.92156 0.92757 1.67342 1.07334 1.36485 1.05862 1.27556 0.89090 1.06907 1.16899 0.90801 0.91107 0.91245 0.90434 0.91400 0.91401 0.90742 0.90243 0.91022 0.90361 0.93532 0.90795 0.84803 0.84289 0.86200 0.77570 0.82996 0.89516 0.93109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.82 8.65 101.05 0.87 1.70 16 2 Si 1.03 -2.26 11.99 -169.99 -2.04 -4.30 16 3 C -0.44 0.26 8.65 101.05 0.87 1.13 16 4 C -0.41 0.72 5.03 37.64 0.19 0.91 16 5 C -0.10 0.08 5.74 -26.44 -0.15 -0.07 16 6 C 0.05 0.00 4.44 -4.31 -0.02 -0.02 16 7 N -0.48 -0.71 4.34 -111.83 -0.49 -1.20 16 8 C 0.31 0.85 5.53 -155.01 -0.86 0.00 16 9 C -0.20 -0.20 8.78 -39.23 -0.34 -0.55 16 10 C -0.04 -0.02 9.83 -39.32 -0.39 -0.40 16 11 C -0.18 -0.10 5.36 -104.46 -0.56 -0.66 16 12 C -0.07 0.07 2.82 36.01 0.10 0.17 16 13 O -0.54 0.11 12.84 -35.23 -0.45 -0.35 16 14 Si 0.94 -0.86 25.16 -169.99 -4.28 -5.14 16 15 H -0.25 0.04 7.11 56.52 0.40 0.45 16 16 H -0.25 -0.10 7.11 56.52 0.40 0.30 16 17 H -0.25 0.17 7.05 56.52 0.40 0.57 16 18 C 0.11 0.21 9.84 -17.57 -0.17 0.04 16 19 N -0.46 -1.87 10.40 -12.44 -0.13 -2.00 16 20 C -0.23 0.05 4.20 60.52 0.25 0.30 16 21 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 22 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 23 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 24 H 0.08 0.04 7.96 -51.93 -0.41 -0.37 16 25 H 0.07 -0.03 7.96 -51.93 -0.41 -0.44 16 26 H 0.07 -0.07 7.96 -51.92 -0.41 -0.48 16 27 H 0.07 -0.16 7.99 -51.93 -0.42 -0.57 16 28 H 0.08 -0.16 7.99 -51.93 -0.42 -0.57 16 29 H 0.07 -0.09 8.14 -51.93 -0.42 -0.51 16 30 H 0.08 -0.01 7.96 -51.93 -0.41 -0.43 16 31 H 0.05 -0.05 7.42 -51.93 -0.39 -0.44 16 32 H 0.07 0.04 7.82 -51.93 -0.41 -0.37 16 33 H 0.13 -0.09 7.49 -52.49 -0.39 -0.48 16 34 H 0.14 -0.14 8.06 -52.49 -0.42 -0.56 16 35 H 0.12 -0.22 7.96 -51.93 -0.41 -0.63 16 36 H 0.38 -1.20 8.70 45.56 0.40 -0.81 16 37 H 0.15 0.05 4.87 -52.49 -0.26 -0.20 16 38 H 0.09 0.04 7.98 -51.93 -0.41 -0.37 16 39 H 0.05 -0.05 7.57 -51.93 -0.39 -0.44 16 LS Contribution 312.63 15.07 4.71 4.71 Total: 0.00 -5.21 312.63 -8.51 -13.72 By element: Atomic # 1 Polarization: -2.35 SS G_CDS: -5.63 Total: -7.99 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: -0.20 Total: 2.54 kcal Atomic # 7 Polarization: -2.58 SS G_CDS: -0.62 Total: -3.20 kcal Atomic # 8 Polarization: 0.11 SS G_CDS: -0.45 Total: -0.35 kcal Atomic # 14 Polarization: -3.12 SS G_CDS: -6.32 Total: -9.44 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -5.21 -8.51 -13.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_27_15766106_13915762.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.479 kcal (2) G-P(sol) polarization free energy of solvation -5.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds