Wall clock time and date at job start Thu Mar 4 2021 12:46:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86292 * 1 3 3 C 1.86301 * 109.98720 * 2 1 4 4 C 1.87525 * 110.00481 * 121.31625 * 2 1 3 5 5 C 1.53925 * 106.85010 * 163.09470 * 4 2 1 6 6 C 1.52629 * 109.31473 * 302.79972 * 5 4 2 7 7 N 1.46351 * 111.89018 * 76.52189 * 6 5 4 8 8 C 1.39008 * 110.99804 * 156.80712 * 7 6 5 9 9 C 1.39094 * 119.70646 * 56.06703 * 8 7 6 10 10 C 1.38338 * 119.09590 * 179.72553 * 9 8 7 11 11 C 1.38841 * 118.50666 * 0.51579 * 10 9 8 12 12 C 1.50706 * 120.33392 * 179.73537 * 11 10 9 13 13 O 1.42895 * 109.47147 * 64.72539 * 12 11 10 14 14 Si 1.86299 * 109.46748 * 184.72181 * 12 11 10 15 15 H 1.48503 * 109.47188 * 60.00070 * 14 12 11 16 16 H 1.48506 * 109.47139 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.47505 * 299.99883 * 14 12 11 18 18 C 1.38058 * 119.32775 * 359.45858 * 11 10 9 19 19 N 1.31946 * 120.85683 * 0.30030 * 18 11 10 20 20 C 1.47721 * 111.30612 * 280.97915 * 7 6 5 21 21 H 1.08997 * 109.47340 * 298.68593 * 1 2 3 22 22 H 1.09002 * 109.47226 * 58.68267 * 1 2 3 23 23 H 1.08995 * 109.47393 * 178.68023 * 1 2 3 24 24 H 1.08992 * 109.47412 * 181.31076 * 3 2 1 25 25 H 1.08996 * 109.47669 * 301.31930 * 3 2 1 26 26 H 1.09008 * 109.46581 * 61.31687 * 3 2 1 27 27 H 1.09001 * 109.97106 * 43.76258 * 4 2 1 28 28 H 1.08992 * 110.05240 * 282.47847 * 4 2 1 29 29 H 1.09003 * 109.50028 * 182.84362 * 5 4 2 30 30 H 1.09002 * 109.49745 * 62.75089 * 5 4 2 31 31 H 1.09000 * 108.99506 * 315.89888 * 6 5 4 32 32 H 1.09000 * 108.99614 * 197.14308 * 6 5 4 33 33 H 1.08000 * 120.45048 * 359.97438 * 9 8 7 34 34 H 1.07999 * 120.74847 * 180.24619 * 10 9 8 35 35 H 1.09000 * 109.47318 * 304.71652 * 12 11 10 36 36 H 0.96695 * 114.00385 * 59.99326 * 13 12 11 37 37 H 1.07997 * 119.57643 * 180.27459 * 18 11 10 38 38 H 1.09001 * 109.94960 * 179.68423 * 20 7 6 39 39 H 1.09005 * 109.94743 * 300.94262 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8629 0.0000 0.0000 3 6 2.4997 1.7508 0.0000 4 6 2.5044 -0.9159 1.5054 5 6 3.9815 -1.2491 1.2290 6 6 4.0830 -2.0637 -0.0578 7 7 3.9262 -1.2261 -1.2476 8 6 4.5144 -1.8218 -2.3573 9 6 4.1284 -3.1029 -2.7376 10 6 4.7179 -3.6814 -3.8473 11 6 5.6849 -2.9609 -4.5354 12 6 6.3580 -3.5540 -5.7463 13 8 5.3930 -3.7422 -6.7833 14 14 7.6930 -2.3993 -6.3425 15 1 8.6958 -2.2036 -5.2648 16 1 8.3567 -2.9839 -7.5354 17 1 7.0910 -1.0902 -6.7022 18 6 6.0194 -1.6934 -4.1023 19 7 5.4370 -1.1644 -3.0432 20 6 2.5043 -0.9181 -1.5036 21 1 -0.3634 0.4933 0.9015 22 1 -0.3634 0.5342 -0.8779 23 1 -0.3634 -1.0273 -0.0237 24 1 3.5893 1.7411 -0.0235 25 1 2.1220 2.2749 -0.8779 26 1 2.1603 2.2608 0.9017 27 1 1.9366 -1.8346 1.6522 28 1 2.4244 -0.2837 2.3896 29 1 4.3853 -1.8286 2.0592 30 1 4.5488 -0.3248 1.1201 31 1 3.3054 -2.8275 -0.0565 32 1 5.0572 -2.5514 -0.0931 33 1 3.3758 -3.6369 -2.1766 34 1 4.4355 -4.6731 -4.1687 35 1 6.7999 -4.5147 -5.4824 36 1 4.9585 -2.9270 -7.0689 37 1 6.7679 -1.1276 -4.6372 38 1 2.4135 -0.2898 -2.3897 39 1 1.9428 -1.8421 -1.6425 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_27_15766106_13915762.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 12:46:46 Heat of formation + Delta-G solvation = -16.949309 kcal Electronic energy + Delta-G solvation = -18497.780344 eV Core-core repulsion = 15757.203874 eV Total energy + Delta-G solvation = -2740.576470 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.132 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.76996 -39.01540 -37.55631 -34.12630 -33.54744 -31.57215 -29.30869 -28.32028 -27.62724 -27.09457 -24.99689 -24.54355 -22.76359 -21.45250 -18.76290 -18.29350 -17.65104 -16.68918 -16.54038 -16.12949 -15.94701 -15.23829 -14.89695 -14.69899 -14.49723 -14.21170 -14.08586 -13.92359 -13.76615 -13.53271 -13.38049 -13.15649 -13.06977 -12.86058 -12.55638 -12.22549 -12.02779 -11.99164 -11.91495 -10.97994 -10.94975 -10.79639 -10.69346 -10.49058 -10.26950 -9.93037 -9.32119 -0.17337 0.18299 1.11922 1.41908 1.48839 1.71290 1.88062 1.94648 1.99988 2.53906 2.56610 2.66607 3.44682 3.56441 3.62047 3.83334 3.89868 3.97475 4.15006 4.18608 4.43944 4.48066 4.55901 4.60956 4.71166 4.74713 4.83571 4.83870 4.86882 4.88592 4.90717 4.95616 5.07763 5.14067 5.32239 5.35757 5.51452 5.60840 5.69146 5.92079 6.04511 6.61821 6.97678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.458 4.458 2 Si 1.094 2.906 3 C -0.460 4.460 4 C -0.412 4.412 5 C -0.105 4.105 6 C 0.054 3.946 7 N -0.495 5.495 8 C 0.297 3.703 9 C -0.200 4.200 10 C -0.037 4.037 11 C -0.179 4.179 12 C -0.066 4.066 13 O -0.549 6.549 14 Si 0.971 3.029 15 H -0.258 1.258 16 H -0.266 1.266 17 H -0.252 1.252 18 C 0.095 3.905 19 N -0.498 5.498 20 C -0.246 4.246 21 H 0.076 0.924 22 H 0.068 0.932 23 H 0.074 0.926 24 H 0.061 0.939 25 H 0.062 0.938 26 H 0.071 0.929 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.151 0.849 34 H 0.157 0.843 35 H 0.133 0.867 36 H 0.389 0.611 37 H 0.159 0.841 38 H 0.073 0.927 39 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.495 -1.987 1.287 3.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.566 4.566 2 Si 1.282 2.718 3 C -0.566 4.566 4 C -0.498 4.498 5 C -0.143 4.143 6 C -0.073 4.073 7 N -0.218 5.218 8 C 0.068 3.932 9 C -0.223 4.223 10 C -0.063 4.063 11 C -0.181 4.181 12 C -0.178 4.178 13 O -0.355 6.355 14 Si 0.796 3.204 15 H -0.182 1.182 16 H -0.191 1.191 17 H -0.176 1.176 18 C -0.063 4.063 19 N -0.208 5.208 20 C -0.416 4.416 21 H 0.095 0.905 22 H 0.087 0.913 23 H 0.093 0.907 24 H 0.080 0.920 25 H 0.081 0.919 26 H 0.091 0.909 27 H 0.103 0.897 28 H 0.103 0.897 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.168 0.832 34 H 0.175 0.825 35 H 0.150 0.850 36 H 0.238 0.762 37 H 0.176 0.824 38 H 0.092 0.908 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.162 -0.754 1.394 1.966 hybrid contribution -0.782 -1.112 -0.543 1.464 sum -1.944 -1.866 0.852 2.826 Atomic orbital electron populations 1.26195 1.20579 1.04934 1.04855 0.78277 0.64773 0.65169 0.63541 1.26265 1.06265 1.20023 1.04088 1.26409 1.00017 1.08732 1.14648 1.21255 0.97306 1.00572 0.95151 1.22109 1.01758 0.94532 0.88883 1.58671 1.15529 1.46512 1.01083 1.20103 0.91726 0.89220 0.92161 1.22809 1.02846 0.97201 0.99410 1.21634 0.92325 1.00392 0.91960 1.21463 1.00400 0.95902 1.00357 1.24858 0.97969 1.09116 0.85853 1.86496 1.57413 1.37921 1.53709 0.85357 0.77337 0.77744 0.80007 1.18248 1.19059 1.17634 1.22771 0.97782 0.92993 0.92710 1.67295 1.08567 1.37878 1.07049 1.27839 0.88526 1.07544 1.17681 0.90459 0.91265 0.90659 0.91961 0.91876 0.90935 0.89705 0.89715 0.90439 0.91476 0.92102 0.91799 0.83178 0.82506 0.84958 0.76203 0.82377 0.90821 0.92174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.10 8.65 113.37 0.98 3.08 16 2 Si 1.09 -4.95 11.99 68.60 0.82 -4.13 16 3 C -0.46 0.08 8.65 113.37 0.98 1.06 16 4 C -0.41 1.79 5.03 72.29 0.36 2.15 16 5 C -0.10 0.15 5.74 30.78 0.18 0.33 16 6 C 0.05 0.01 4.44 86.28 0.38 0.39 16 7 N -0.50 -1.89 4.34 -507.73 -2.21 -4.10 16 8 C 0.30 1.90 5.53 133.04 0.74 2.63 16 9 C -0.20 -0.39 8.78 22.50 0.20 -0.19 16 10 C -0.04 -0.02 9.83 22.44 0.22 0.20 16 11 C -0.18 -0.21 5.36 -19.76 -0.11 -0.32 16 12 C -0.07 0.14 2.82 71.24 0.20 0.34 16 13 O -0.55 0.58 12.84 -148.98 -1.91 -1.33 16 14 Si 0.97 -1.36 25.16 68.60 1.73 0.37 16 15 H -0.26 -0.13 7.11 99.48 0.71 0.58 16 16 H -0.27 -0.37 7.11 99.48 0.71 0.34 16 17 H -0.25 0.21 7.05 99.48 0.70 0.91 16 18 C 0.09 0.47 9.84 84.63 0.83 1.30 16 19 N -0.50 -4.82 10.40 -193.27 -2.01 -6.82 16 20 C -0.25 0.01 4.20 127.53 0.54 0.54 16 21 H 0.08 -0.37 7.96 -2.39 -0.02 -0.39 16 22 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 23 H 0.07 -0.40 7.96 -2.39 -0.02 -0.42 16 24 H 0.06 0.18 7.96 -2.39 -0.02 0.16 16 25 H 0.06 0.03 7.96 -2.39 -0.02 0.01 16 26 H 0.07 -0.10 7.96 -2.38 -0.02 -0.12 16 27 H 0.08 -0.50 7.99 -2.39 -0.02 -0.52 16 28 H 0.08 -0.42 7.99 -2.39 -0.02 -0.44 16 29 H 0.08 -0.21 8.14 -2.39 -0.02 -0.23 16 30 H 0.07 0.05 7.96 -2.39 -0.02 0.03 16 31 H 0.06 -0.19 7.42 -2.39 -0.02 -0.20 16 32 H 0.06 0.12 7.82 -2.39 -0.02 0.10 16 33 H 0.15 -0.32 7.49 -2.91 -0.02 -0.34 16 34 H 0.16 -0.54 8.06 -2.91 -0.02 -0.56 16 35 H 0.13 -0.61 7.96 -2.39 -0.02 -0.63 16 36 H 0.39 -2.63 8.70 -74.06 -0.64 -3.28 16 37 H 0.16 0.32 4.87 -2.91 -0.01 0.31 16 38 H 0.07 0.17 7.98 -2.39 -0.02 0.15 16 39 H 0.06 -0.14 7.57 -2.38 -0.02 -0.16 16 Total: 0.00 -12.53 312.63 3.05 -9.48 By element: Atomic # 1 Polarization: -6.12 SS G_CDS: 1.13 Total: -5.00 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: 5.50 Total: 11.53 kcal Atomic # 7 Polarization: -6.71 SS G_CDS: -4.21 Total: -10.92 kcal Atomic # 8 Polarization: 0.58 SS G_CDS: -1.91 Total: -1.33 kcal Atomic # 14 Polarization: -6.31 SS G_CDS: 2.55 Total: -3.76 kcal Total: -12.53 3.05 -9.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_27_15766106_13915762.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.471 kcal (2) G-P(sol) polarization free energy of solvation -12.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds