Wall clock time and date at job start Thu Mar 4 2021 12:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86298 * 109.98467 * 2 1 4 4 C 1.87519 * 110.00262 * 121.31382 * 2 1 3 5 5 C 1.53931 * 106.84990 * 75.50380 * 4 2 1 6 6 C 1.52625 * 109.31213 * 57.20241 * 5 4 2 7 7 N 1.46356 * 111.89301 * 283.47721 * 6 5 4 8 8 C 1.39149 * 111.00605 * 203.19385 * 7 6 5 9 9 C 1.39300 * 119.71372 * 303.68558 * 8 7 6 10 10 F 1.35095 * 120.47317 * 359.97438 * 9 8 7 11 11 C 1.38492 * 119.05453 * 179.74689 * 9 8 7 12 12 C 1.38864 * 118.48108 * 0.51402 * 11 9 8 13 13 C 1.50699 * 120.32454 * 179.77526 * 12 11 9 14 14 O 1.42910 * 109.46829 * 299.97272 * 13 12 11 15 15 Si 1.86302 * 109.47268 * 179.97438 * 13 12 11 16 16 H 1.48505 * 109.47169 * 59.99620 * 15 13 12 17 17 H 1.48496 * 109.47520 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46948 * 299.99637 * 15 13 12 19 19 C 1.38031 * 119.34802 * 359.74395 * 12 11 9 20 20 N 1.31972 * 120.89731 * 359.97438 * 19 12 11 21 21 C 1.47730 * 111.30380 * 79.01913 * 7 6 5 22 22 H 1.09002 * 109.47148 * 298.68464 * 1 2 3 23 23 H 1.09001 * 109.46900 * 178.68616 * 1 2 3 24 24 H 1.09004 * 109.47198 * 58.68594 * 1 2 3 25 25 H 1.08995 * 109.47286 * 60.00140 * 3 2 1 26 26 H 1.08996 * 109.47244 * 180.02562 * 3 2 1 27 27 H 1.09006 * 109.47364 * 299.99889 * 3 2 1 28 28 H 1.09000 * 109.97491 * 194.83359 * 4 2 1 29 29 H 1.08992 * 109.97698 * 316.07776 * 4 2 1 30 30 H 1.09004 * 109.49886 * 177.15481 * 5 4 2 31 31 H 1.09003 * 109.49679 * 297.25670 * 5 4 2 32 32 H 1.09003 * 108.99678 * 44.10076 * 6 5 4 33 33 H 1.09007 * 108.99637 * 162.85762 * 6 5 4 34 34 H 1.07999 * 120.75826 * 180.25890 * 11 9 8 35 35 H 1.08995 * 109.47516 * 59.97302 * 13 12 11 36 36 H 0.96693 * 113.99543 * 300.00231 * 14 13 12 37 37 H 1.07995 * 119.55018 * 179.97438 * 19 12 11 38 38 H 1.08994 * 109.95206 * 180.31930 * 21 7 6 39 39 H 1.09005 * 109.94316 * 59.06492 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4997 1.7508 0.0000 4 6 2.5044 -0.9158 1.5054 5 6 2.3105 -2.4178 1.2301 6 6 3.0398 -2.7933 -0.0570 7 7 2.3060 -2.3594 -1.2466 8 6 2.6632 -3.1177 -2.3573 9 6 3.9999 -3.1908 -2.7424 10 9 4.9507 -2.5307 -2.0458 11 6 4.3409 -3.9537 -3.8468 12 6 3.3297 -4.6100 -4.5360 13 6 3.6532 -5.4472 -5.7466 14 8 4.2674 -4.6269 -6.7427 15 14 2.0843 -6.1838 -6.4297 16 1 1.1530 -5.0935 -6.8163 17 1 2.4030 -7.0083 -7.6229 18 1 1.4460 -7.0361 -5.3946 19 6 2.0253 -4.4885 -4.1011 20 7 1.7294 -3.7591 -3.0417 21 6 2.5043 -0.9182 -1.5035 22 1 -0.3633 0.4933 0.9016 23 1 -0.3633 -1.0274 -0.0236 24 1 -0.3634 0.5341 -0.8780 25 1 2.1411 2.2679 0.8899 26 1 3.5896 1.7411 -0.0005 27 1 2.1410 2.2679 -0.8900 28 1 3.5624 -0.6975 1.6512 29 1 1.9385 -0.6218 2.3892 30 1 2.7171 -2.9954 2.0604 31 1 1.2476 -2.6336 1.1221 32 1 4.0241 -2.3249 -0.0567 33 1 3.1637 -3.8758 -0.0918 34 1 5.3692 -4.0330 -4.1672 35 1 4.3367 -6.2474 -5.4628 36 1 3.7147 -3.8926 -7.0430 37 1 1.2363 -4.9971 -4.6349 38 1 1.9446 -0.6179 -2.3893 39 1 3.5647 -0.7079 -1.6434 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_27_15766106_17656566.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 12:49:25 Heat of formation + Delta-G solvation = -64.677117 kcal Electronic energy + Delta-G solvation = -21064.479818 eV Core-core repulsion = 17852.379739 eV Total energy + Delta-G solvation = -3212.100079 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 284.122 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.16688 -41.65318 -39.08979 -37.71199 -34.27389 -33.36139 -31.55701 -29.41613 -28.41262 -27.75350 -27.24866 -25.16849 -24.59139 -22.94340 -21.77824 -19.14233 -18.60696 -18.39308 -17.71836 -17.13000 -16.41515 -16.31611 -16.22025 -15.88571 -15.15870 -14.87266 -14.73911 -14.51348 -14.26980 -14.05918 -14.01332 -13.82480 -13.65696 -13.54173 -13.25909 -13.14073 -12.93261 -12.83913 -12.29879 -12.12347 -12.06039 -11.98697 -11.11402 -10.95190 -10.91084 -10.80285 -10.63870 -10.38691 -9.90810 -9.41465 -0.40812 -0.09012 0.95608 1.31393 1.37473 1.56359 1.78615 1.80365 1.86226 2.32387 2.39462 2.55461 2.83428 3.21567 3.36469 3.47577 3.65929 3.77983 3.95890 4.10190 4.25454 4.31294 4.44134 4.51262 4.57325 4.63267 4.68886 4.69956 4.71427 4.79488 4.80646 4.86441 4.91650 5.02220 5.17377 5.25625 5.38804 5.45070 5.64992 5.79644 5.91806 6.33700 6.78946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.441 4.441 2 Si 1.032 2.968 3 C -0.451 4.451 4 C -0.409 4.409 5 C -0.101 4.101 6 C 0.046 3.954 7 N -0.474 5.474 8 C 0.291 3.709 9 C 0.020 3.980 10 F -0.125 7.125 11 C -0.073 4.073 12 C -0.154 4.154 13 C -0.077 4.077 14 O -0.535 6.535 15 Si 0.943 3.057 16 H -0.245 1.245 17 H -0.246 1.246 18 H -0.244 1.244 19 C 0.098 3.902 20 N -0.433 5.433 21 C -0.241 4.241 22 H 0.067 0.933 23 H 0.077 0.923 24 H 0.067 0.933 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.153 0.847 35 H 0.125 0.875 36 H 0.379 0.621 37 H 0.162 0.838 38 H 0.087 0.913 39 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.003 0.233 -0.133 0.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.550 4.550 2 Si 1.225 2.775 3 C -0.559 4.559 4 C -0.495 4.495 5 C -0.139 4.139 6 C -0.081 4.081 7 N -0.196 5.196 8 C 0.059 3.941 9 C -0.005 4.005 10 F -0.104 7.104 11 C -0.100 4.100 12 C -0.157 4.157 13 C -0.188 4.188 14 O -0.340 6.340 15 Si 0.765 3.235 16 H -0.169 1.169 17 H -0.170 1.170 18 H -0.167 1.167 19 C -0.060 4.060 20 N -0.141 5.141 21 C -0.412 4.412 22 H 0.087 0.913 23 H 0.096 0.904 24 H 0.086 0.914 25 H 0.093 0.907 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.093 0.907 29 H 0.098 0.902 30 H 0.091 0.909 31 H 0.097 0.903 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.171 0.829 35 H 0.142 0.858 36 H 0.226 0.774 37 H 0.178 0.822 38 H 0.106 0.894 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.608 -0.547 -0.009 1.698 hybrid contribution 1.994 0.615 -0.315 2.110 sum 0.386 0.068 -0.325 0.509 Atomic orbital electron populations 1.26008 1.19779 1.05052 1.04114 0.79198 0.67882 0.65384 0.65006 1.26128 1.06405 1.18671 1.04738 1.26352 1.06184 1.02696 1.14275 1.21223 1.01734 0.95849 0.95126 1.22183 0.96067 1.00806 0.89035 1.58767 1.57944 1.02435 1.00411 1.20066 0.85703 0.94817 0.93470 1.19624 0.87819 0.98345 0.94671 1.91505 1.62970 1.78444 1.77459 1.21517 1.01699 0.94339 0.92457 1.21321 0.93882 1.00857 0.99595 1.24969 1.10252 0.96319 0.87251 1.86543 1.45937 1.45103 1.56443 0.85753 0.75154 0.81191 0.81439 1.16861 1.16956 1.16739 1.22670 0.94774 0.95561 0.92954 1.67441 1.35393 1.05733 1.05518 1.27623 1.04982 0.91329 1.17252 0.91350 0.90419 0.91375 0.90746 0.91178 0.91100 0.90653 0.90164 0.90916 0.90340 0.92532 0.90909 0.82929 0.85751 0.77414 0.82154 0.89390 0.92528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.44 0.27 8.65 101.05 0.87 1.14 16 2 Si 1.03 -1.85 11.99 -169.99 -2.04 -3.89 16 3 C -0.45 0.65 8.65 101.05 0.87 1.53 16 4 C -0.41 0.53 5.04 37.64 0.19 0.72 16 5 C -0.10 0.04 5.74 -26.44 -0.15 -0.11 16 6 C 0.05 0.04 4.26 -4.31 -0.02 0.02 16 7 N -0.47 -0.92 4.34 -111.74 -0.48 -1.40 16 8 C 0.29 0.84 5.55 -154.84 -0.86 -0.02 16 9 C 0.02 0.04 6.73 -39.09 -0.26 -0.22 16 10 F -0.13 -0.31 13.87 2.25 0.03 -0.28 16 11 C -0.07 -0.04 9.75 -39.26 -0.38 -0.43 16 12 C -0.15 0.03 5.40 -104.47 -0.56 -0.53 16 13 C -0.08 0.14 2.84 36.01 0.10 0.24 16 14 O -0.54 0.55 12.78 -35.23 -0.45 0.10 16 15 Si 0.94 -1.84 25.10 -169.99 -4.27 -6.10 16 16 H -0.25 0.43 7.11 56.52 0.40 0.83 16 17 H -0.25 0.12 7.11 56.52 0.40 0.52 16 18 H -0.24 0.35 7.11 56.52 0.40 0.75 16 19 C 0.10 0.09 9.84 -17.57 -0.17 -0.09 16 20 N -0.43 -1.42 10.39 -12.37 -0.13 -1.55 16 21 C -0.24 -0.11 4.13 60.52 0.25 0.14 16 22 H 0.07 -0.07 7.96 -51.93 -0.41 -0.48 16 23 H 0.08 0.03 7.96 -51.93 -0.41 -0.38 16 24 H 0.07 -0.03 7.96 -51.93 -0.41 -0.45 16 25 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 26 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 27 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 28 H 0.07 -0.11 7.99 -51.93 -0.42 -0.52 16 29 H 0.08 -0.14 7.99 -51.93 -0.42 -0.55 16 30 H 0.07 -0.07 8.14 -51.93 -0.42 -0.49 16 31 H 0.08 -0.01 7.96 -51.93 -0.41 -0.42 16 32 H 0.06 0.04 6.37 -51.93 -0.33 -0.29 16 33 H 0.07 0.09 7.82 -51.93 -0.41 -0.32 16 34 H 0.15 -0.10 8.06 -52.49 -0.42 -0.52 16 35 H 0.12 -0.35 7.96 -51.93 -0.41 -0.76 16 36 H 0.38 -1.56 8.70 45.56 0.40 -1.16 16 37 H 0.16 -0.17 4.88 -52.49 -0.26 -0.42 16 38 H 0.09 0.06 7.98 -51.93 -0.41 -0.36 16 39 H 0.06 0.03 6.63 -51.93 -0.34 -0.31 16 LS Contribution 314.64 15.07 4.74 4.74 Total: 0.00 -5.01 314.64 -7.85 -12.86 By element: Atomic # 1 Polarization: -1.74 SS G_CDS: -5.13 Total: -6.88 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: -0.12 Total: 2.40 kcal Atomic # 7 Polarization: -2.34 SS G_CDS: -0.61 Total: -2.95 kcal Atomic # 8 Polarization: 0.55 SS G_CDS: -0.45 Total: 0.10 kcal Atomic # 9 Polarization: -0.31 SS G_CDS: 0.03 Total: -0.28 kcal Atomic # 14 Polarization: -3.69 SS G_CDS: -6.30 Total: -9.99 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -5.01 -7.85 -12.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_27_15766106_17656566.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.818 kcal (2) G-P(sol) polarization free energy of solvation -5.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds