Wall clock time and date at job start Thu Mar 4 2021 13:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47083 * 2 1 4 4 C 1.53010 * 109.47086 * 239.99813 * 2 1 3 5 5 O 1.45201 * 109.46807 * 120.00536 * 2 1 3 6 6 C 1.34630 * 117.00385 * 59.99985 * 5 2 1 7 7 O 1.21511 * 120.00135 * 0.02562 * 6 5 2 8 8 N 1.34778 * 119.99952 * 180.02562 * 6 5 2 9 9 C 1.46503 * 119.99663 * 179.97438 * 8 6 5 10 10 C 1.53000 * 109.46719 * 180.02562 * 9 8 6 11 11 H 1.08996 * 112.85412 * 43.80384 * 10 9 8 12 12 C 1.53784 * 113.61261 * 175.00322 * 10 9 8 13 13 C 1.53776 * 87.08347 * 89.19949 * 12 10 9 14 14 F 1.39905 * 113.61454 * 270.80024 * 13 12 10 15 15 C 1.53001 * 113.61536 * 139.98269 * 13 12 10 16 16 N 1.46507 * 109.46890 * 179.97438 * 15 13 12 17 17 C 1.39003 * 119.99388 * 179.97438 * 16 15 13 18 18 N 1.32404 * 119.69986 * 180.02562 * 17 16 15 19 19 C 1.31965 * 121.61839 * 180.02562 * 18 17 16 20 20 C 1.38028 * 120.86143 * 0.02562 * 19 18 17 21 21 C 1.50697 * 120.33599 * 180.02562 * 20 19 18 22 22 O 1.42896 * 109.47045 * 119.97845 * 21 20 19 23 23 Si 1.86304 * 109.47341 * 359.97438 * 21 20 19 24 24 C 1.38884 * 119.32474 * 0.02562 * 20 19 18 25 25 C 1.38292 * 118.50799 * 359.97438 * 24 20 19 26 26 C 1.53780 * 87.08442 * 25.43379 * 13 12 10 27 27 H 1.08995 * 109.47050 * 299.99961 * 1 2 3 28 28 H 1.09005 * 109.46838 * 60.00121 * 1 2 3 29 29 H 1.08997 * 109.47376 * 179.97438 * 1 2 3 30 30 H 1.09010 * 109.47008 * 179.97438 * 3 2 1 31 31 H 1.08993 * 109.47515 * 299.99591 * 3 2 1 32 32 H 1.08996 * 109.46783 * 60.00497 * 3 2 1 33 33 H 1.08989 * 109.46972 * 300.00491 * 4 2 1 34 34 H 1.09001 * 109.46545 * 60.00518 * 4 2 1 35 35 H 1.09003 * 109.46732 * 180.02562 * 4 2 1 36 36 H 0.96995 * 120.00223 * 359.97438 * 8 6 5 37 37 H 1.09001 * 109.47370 * 60.00355 * 9 8 6 38 38 H 1.08996 * 109.47330 * 299.99430 * 9 8 6 39 39 H 1.08996 * 113.61477 * 334.64458 * 12 10 9 40 40 H 1.09005 * 113.69096 * 203.75605 * 12 10 9 41 41 H 1.08998 * 109.47421 * 60.00084 * 15 13 12 42 42 H 1.09001 * 109.47061 * 299.99414 * 15 13 12 43 43 H 0.96991 * 120.00122 * 359.97438 * 16 15 13 44 44 H 1.08003 * 119.57384 * 179.97438 * 19 18 17 45 45 H 1.09006 * 109.47236 * 239.97953 * 21 20 19 46 46 H 0.96698 * 114.00355 * 179.97438 * 22 21 20 47 47 H 1.48501 * 109.99875 * 298.68198 * 23 21 20 48 48 H 1.48498 * 109.99789 * 59.99956 * 23 21 20 49 49 H 1.07996 * 120.74246 * 180.02562 * 24 20 19 50 50 H 1.07998 * 120.44972 * 180.02562 * 25 24 20 51 51 H 1.09000 * 113.61665 * 89.11767 * 26 13 12 52 52 H 1.08999 * 113.61655 * 220.02731 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 8 2.0139 -0.6846 1.1855 6 6 1.6522 -1.9724 1.3382 7 8 0.9516 -2.5098 0.5034 8 7 2.0671 -2.6655 2.4171 9 6 1.6730 -4.0667 2.5835 10 6 2.2721 -4.6143 3.8804 11 1 2.1772 -3.9213 4.7163 12 6 1.8182 -6.0457 4.2123 13 6 3.0222 -6.5342 3.3897 14 9 2.7385 -6.7095 2.0310 15 6 3.7388 -7.7368 4.0070 16 7 4.8646 -8.1252 3.1536 17 6 5.6700 -9.1999 3.5121 18 7 6.6861 -9.5455 2.7368 19 6 7.4744 -10.5593 3.0405 20 6 7.2649 -11.3008 4.1857 21 6 8.1728 -12.4558 4.5213 22 8 8.8022 -12.2164 5.7816 23 14 9.4746 -12.6270 3.1995 24 6 6.2090 -10.9715 5.0255 25 6 5.3999 -9.9041 4.6813 26 6 3.6896 -5.1869 3.7128 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1301 1.4424 0.0005 31 1 1.6768 1.9563 -0.8899 32 1 1.6767 1.9562 0.8900 33 1 1.6766 -1.7489 -1.2493 34 1 1.6767 -0.2074 -2.1392 35 1 3.1301 -0.7217 -1.2490 36 1 2.6267 -2.2367 3.0833 37 1 2.0395 -4.6500 1.7388 38 1 0.5861 -4.1355 2.6284 39 1 0.8551 -6.3105 3.7762 40 1 1.8850 -6.2916 5.2722 41 1 3.0424 -8.5710 4.0910 42 1 4.1082 -7.4706 4.9973 43 1 5.0479 -7.6324 2.3385 44 1 8.2937 -10.8128 2.3840 45 1 7.5877 -13.3740 4.5759 46 1 9.4020 -12.9211 6.0619 47 1 8.8343 -12.9079 1.8894 48 1 10.2792 -11.3817 3.1150 49 1 6.0243 -11.5359 5.9276 50 1 4.5702 -9.6205 5.3118 51 1 4.2686 -5.1968 4.6362 52 1 4.2370 -4.7584 2.8733 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_27_16498494_13915762.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 13:15:32 Heat of formation + Delta-G solvation = -89.177161 kcal Electronic energy + Delta-G solvation = -33106.519500 eV Core-core repulsion = 28409.321592 eV Total energy + Delta-G solvation = -4697.197908 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 368.194 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -48.92972 -41.88784 -41.50256 -40.02305 -38.39174 -37.95053 -36.73412 -35.72774 -34.79141 -33.65185 -32.07639 -29.88825 -28.43133 -28.35493 -27.58341 -27.03405 -25.75492 -25.00333 -23.50029 -22.93675 -22.31495 -21.29297 -20.28106 -19.12287 -18.97123 -18.54167 -18.21358 -17.80472 -17.44661 -17.07623 -17.03914 -16.54713 -16.48684 -16.14392 -15.81660 -15.74594 -15.63436 -15.53130 -15.18569 -15.08289 -14.81862 -14.55917 -14.28730 -14.20412 -14.18755 -13.91673 -13.88993 -13.64921 -13.40318 -13.27509 -13.07641 -12.97619 -12.92334 -12.59282 -12.46717 -12.44794 -12.31316 -12.12450 -12.05595 -11.48833 -11.46291 -11.34835 -11.22539 -11.12420 -10.87624 -10.72431 -10.29597 -10.19407 -8.83639 -4.97374 0.04967 0.28998 1.08316 1.32107 1.63027 1.67587 1.90222 1.97973 2.67050 2.99397 3.10735 3.18494 3.24520 3.36291 3.38964 3.48103 3.55564 3.68622 3.73599 3.75996 3.88540 3.89416 3.97249 4.03340 4.26381 4.28189 4.39126 4.41831 4.45871 4.50498 4.53833 4.55396 4.64206 4.65448 4.66805 4.70447 4.73180 4.79102 4.82210 4.85158 4.88782 4.92158 4.97244 5.06718 5.16279 5.19396 5.20979 5.25580 5.29766 5.36825 5.52299 5.86362 6.31139 6.31376 6.94282 6.98126 7.26341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.126 3.874 3 C -0.137 4.137 4 C -0.181 4.181 5 O -0.368 6.368 6 C 0.641 3.359 7 O -0.597 6.597 8 N -0.697 5.697 9 C 0.147 3.853 10 C -0.117 4.117 11 H 0.123 0.877 12 C -0.125 4.125 13 C 0.068 3.932 14 F -0.205 7.205 15 C 0.119 3.881 16 N -0.723 5.723 17 C 0.391 3.609 18 N -0.573 5.573 19 C 0.124 3.876 20 C -0.202 4.202 21 C -0.056 4.056 22 O -0.564 6.564 23 Si 0.766 3.234 24 C -0.006 4.006 25 C -0.231 4.231 26 C -0.145 4.145 27 H 0.064 0.936 28 H 0.087 0.913 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.099 0.901 32 H 0.071 0.929 33 H 0.060 0.940 34 H 0.088 0.912 35 H 0.060 0.940 36 H 0.418 0.582 37 H 0.059 0.941 38 H 0.069 0.931 39 H 0.085 0.915 40 H 0.143 0.857 41 H 0.084 0.916 42 H 0.112 0.888 43 H 0.402 0.598 44 H 0.137 0.863 45 H 0.098 0.902 46 H 0.404 0.596 47 H -0.293 1.293 48 H -0.302 1.302 49 H 0.162 0.838 50 H 0.165 0.835 51 H 0.129 0.871 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.381 -1.377 8.384 8.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.090 3.910 3 C -0.194 4.194 4 C -0.238 4.238 5 O -0.283 6.283 6 C 0.394 3.606 7 O -0.488 6.488 8 N -0.358 5.358 9 C 0.025 3.975 10 C -0.135 4.135 11 H 0.141 0.859 12 C -0.164 4.164 13 C 0.049 3.951 14 F -0.185 7.185 15 C -0.005 4.005 16 N -0.355 5.355 17 C 0.155 3.845 18 N -0.291 5.291 19 C -0.032 4.032 20 C -0.207 4.207 21 C -0.167 4.167 22 O -0.373 6.373 23 Si 0.674 3.326 24 C -0.032 4.032 25 C -0.256 4.256 26 C -0.183 4.183 27 H 0.083 0.917 28 H 0.106 0.894 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.117 0.883 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.107 0.893 35 H 0.079 0.921 36 H 0.255 0.745 37 H 0.077 0.923 38 H 0.087 0.913 39 H 0.104 0.896 40 H 0.161 0.839 41 H 0.102 0.898 42 H 0.129 0.871 43 H 0.237 0.763 44 H 0.154 0.846 45 H 0.116 0.884 46 H 0.255 0.745 47 H -0.220 1.220 48 H -0.230 1.230 49 H 0.179 0.821 50 H 0.183 0.817 51 H 0.147 0.853 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.036 -0.212 6.490 6.494 hybrid contribution -0.282 0.117 -0.205 0.367 sum -0.318 -0.096 6.286 6.294 Atomic orbital electron populations 1.22469 0.93936 1.03619 1.03652 1.22373 0.94567 0.92641 0.81396 1.21888 1.02430 0.90693 1.04370 1.22480 1.01573 1.02158 0.97590 1.86304 1.71545 1.23155 1.47280 1.18375 0.78826 0.80864 0.82520 1.90916 1.42420 1.71073 1.44374 1.44646 1.55313 1.12604 1.23190 1.21277 0.99842 0.78401 0.98004 1.22481 0.95742 0.98211 0.97076 0.85858 1.23597 0.96912 0.92948 1.02916 1.22452 0.99432 0.95936 0.77276 1.92846 1.94564 1.96380 1.34726 1.22106 0.87019 0.96512 0.94853 1.44440 1.30876 1.32066 1.28091 1.18649 0.88056 0.87910 0.89909 1.67023 1.08002 1.19314 1.34766 1.22076 0.95926 0.90103 0.95143 1.20379 1.00755 1.01573 0.97985 1.24433 1.00533 0.96850 0.94881 1.86426 1.64268 1.50756 1.35888 0.94570 0.79689 0.83398 0.74986 1.21508 0.90281 0.93773 0.97639 1.21765 1.05314 0.99826 0.98686 1.23760 0.96951 0.93088 1.04456 0.91698 0.89397 0.91983 0.91229 0.88251 0.90971 0.92087 0.89334 0.92054 0.74468 0.92280 0.91311 0.89600 0.83869 0.89831 0.87059 0.76295 0.84594 0.88405 0.74499 1.22028 1.22975 0.82071 0.81748 0.85266 0.91318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.78 8.37 71.98 0.60 -0.18 16 2 C 0.13 0.54 1.13 -10.79 -0.01 0.53 16 3 C -0.14 0.17 8.85 71.98 0.64 0.81 16 4 C -0.18 -0.94 8.37 71.99 0.60 -0.34 16 5 O -0.37 -2.49 9.94 -55.39 -0.55 -3.04 16 6 C 0.64 5.42 8.06 129.79 1.05 6.46 16 7 O -0.60 -8.74 11.88 19.81 0.24 -8.50 16 8 N -0.70 -0.87 5.56 -590.85 -3.29 -4.16 16 9 C 0.15 -0.01 5.29 86.38 0.46 0.45 16 10 C -0.12 0.92 3.94 -10.26 -0.04 0.88 16 11 H 0.12 -1.48 8.14 -2.39 -0.02 -1.50 16 12 C -0.13 1.19 7.13 31.12 0.22 1.41 16 13 C 0.07 -0.32 1.66 -10.27 -0.02 -0.33 16 14 F -0.20 -0.82 15.02 44.97 0.68 -0.15 16 15 C 0.12 -0.65 4.58 86.38 0.40 -0.25 16 16 N -0.72 -1.69 5.64 -345.05 -1.95 -3.63 16 17 C 0.39 2.66 7.65 133.06 1.02 3.68 16 18 N -0.57 -7.07 10.39 -193.26 -2.01 -9.08 16 19 C 0.12 1.30 9.84 84.62 0.83 2.13 16 20 C -0.20 -1.16 5.43 -19.76 -0.11 -1.27 16 21 C -0.06 0.03 2.83 71.23 0.20 0.23 16 22 O -0.56 0.69 12.75 -148.98 -1.90 -1.21 16 23 Si 0.77 -0.44 29.82 68.60 2.05 1.60 16 24 C -0.01 -0.02 9.77 22.44 0.22 0.20 16 25 C -0.23 -0.44 9.33 22.50 0.21 -0.23 16 26 C -0.15 1.02 7.07 31.12 0.22 1.24 16 27 H 0.06 0.20 8.14 -2.39 -0.02 0.18 16 28 H 0.09 0.07 8.14 -2.38 -0.02 0.05 16 29 H 0.06 0.62 5.88 -2.39 -0.01 0.61 16 30 H 0.07 -0.10 8.14 -2.38 -0.02 -0.11 16 31 H 0.10 -0.45 8.14 -2.39 -0.02 -0.47 16 32 H 0.07 -0.13 8.14 -2.39 -0.02 -0.15 16 33 H 0.06 0.68 5.88 -2.39 -0.01 0.66 16 34 H 0.09 0.13 8.14 -2.39 -0.02 0.11 16 35 H 0.06 0.28 8.14 -2.39 -0.02 0.26 16 36 H 0.42 -1.74 8.58 -92.71 -0.80 -2.53 16 37 H 0.06 0.32 6.32 -2.39 -0.02 0.30 16 38 H 0.07 0.11 8.14 -2.39 -0.02 0.09 16 39 H 0.09 -0.64 8.10 -2.39 -0.02 -0.66 16 40 H 0.14 -2.21 8.10 -2.38 -0.02 -2.23 16 41 H 0.08 -0.54 7.92 -2.39 -0.02 -0.56 16 42 H 0.11 -1.16 7.73 -2.39 -0.02 -1.18 16 43 H 0.40 1.92 8.31 -92.71 -0.77 1.15 16 44 H 0.14 1.38 4.88 -2.91 -0.01 1.36 16 45 H 0.10 -0.52 7.96 -2.38 -0.02 -0.54 16 46 H 0.40 -4.75 8.74 -74.06 -0.65 -5.40 16 47 H -0.29 -1.65 7.11 99.48 0.71 -0.95 16 48 H -0.30 -2.38 7.11 99.48 0.71 -1.67 16 49 H 0.16 -0.41 8.06 -2.91 -0.02 -0.43 16 50 H 0.17 -0.84 6.71 -2.91 -0.02 -0.85 16 51 H 0.13 -1.45 7.96 -2.39 -0.02 -1.47 16 52 H 0.07 -0.20 8.10 -2.39 -0.02 -0.22 16 Total: 0.00 -27.43 417.02 -1.46 -28.88 By element: Atomic # 1 Polarization: -14.95 SS G_CDS: -1.21 Total: -16.16 kcal Atomic # 6 Polarization: 8.94 SS G_CDS: 6.49 Total: 15.43 kcal Atomic # 7 Polarization: -9.63 SS G_CDS: -7.24 Total: -16.87 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: -2.22 Total: -12.74 kcal Atomic # 9 Polarization: -0.82 SS G_CDS: 0.68 Total: -0.15 kcal Atomic # 14 Polarization: -0.44 SS G_CDS: 2.05 Total: 1.60 kcal Total: -27.43 -1.46 -28.88 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_27_16498494_13915762.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.293 kcal (2) G-P(sol) polarization free energy of solvation -27.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds