Wall clock time and date at job start Thu Mar 4 2021 13:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33329 * 125.95422 * 2 1 4 4 C 1.50703 * 122.70641 * 0.02562 * 3 2 1 5 5 O 1.42897 * 109.46866 * 329.99086 * 4 3 2 6 6 Si 1.86302 * 109.46580 * 209.99720 * 4 3 2 7 7 N 1.32125 * 114.58031 * 179.75356 * 3 2 1 8 8 C 1.29688 * 116.86572 * 0.47718 * 7 3 2 9 9 N 1.38608 * 124.94847 * 179.81731 * 8 7 3 10 10 C 1.46499 * 119.99898 * 179.72099 * 9 8 7 11 11 C 1.53000 * 109.46840 * 179.97438 * 10 9 8 12 12 F 1.39896 * 112.84927 * 316.19084 * 11 10 9 13 13 C 1.53775 * 113.61825 * 87.50296 * 11 10 9 14 14 C 1.53781 * 87.08301 * 89.11020 * 13 11 10 15 15 H 1.08996 * 113.61757 * 270.88350 * 14 13 11 16 16 C 1.53004 * 113.61211 * 139.98021 * 14 13 11 17 17 N 1.46502 * 109.46983 * 87.50301 * 16 14 13 18 18 C 1.34772 * 119.99991 * 179.97438 * 17 16 14 19 19 O 1.21511 * 120.00270 * 0.02562 * 18 17 16 20 20 O 1.34640 * 120.00120 * 180.02562 * 18 17 16 21 21 C 1.45202 * 117.00157 * 180.02562 * 20 18 17 22 22 C 1.52997 * 109.47128 * 59.99643 * 21 20 18 23 23 C 1.52997 * 109.47060 * 179.97438 * 21 20 18 24 24 C 1.52998 * 109.46617 * 299.99576 * 21 20 18 25 25 C 1.53779 * 87.07698 * 25.43618 * 14 13 11 26 26 S 1.70969 * 110.10104 * 359.54359 * 8 7 3 27 27 H 1.08997 * 109.47007 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46954 * 300.01807 * 1 2 3 29 29 H 1.08997 * 109.47378 * 60.01951 * 1 2 3 30 30 H 1.08999 * 109.47488 * 89.99569 * 4 3 2 31 31 H 0.96694 * 114.00615 * 300.00455 * 5 4 3 32 32 H 1.48504 * 109.99885 * 179.97438 * 6 4 3 33 33 H 1.48500 * 110.00168 * 301.31467 * 6 4 3 34 34 H 0.97000 * 119.99681 * 359.71080 * 9 8 7 35 35 H 1.09002 * 109.47391 * 59.99423 * 10 9 8 36 36 H 1.09001 * 109.46813 * 299.99479 * 10 9 8 37 37 H 1.09001 * 113.61743 * 203.66349 * 13 11 10 38 38 H 1.09010 * 113.61239 * 334.56448 * 13 11 10 39 39 H 1.09000 * 109.47371 * 207.50598 * 16 14 13 40 40 H 1.09000 * 109.47020 * 327.50951 * 16 14 13 41 41 H 0.97002 * 119.99613 * 0.02562 * 17 16 14 42 42 H 1.08993 * 109.47516 * 60.00287 * 22 21 20 43 43 H 1.09006 * 109.47178 * 180.02562 * 22 21 20 44 44 H 1.09001 * 109.46983 * 299.99572 * 22 21 20 45 45 H 1.08998 * 109.47594 * 59.99415 * 23 21 20 46 46 H 1.08998 * 109.46954 * 179.97438 * 23 21 20 47 47 H 1.09006 * 109.47221 * 299.99434 * 23 21 20 48 48 H 1.09001 * 109.47738 * 60.00278 * 24 21 20 49 49 H 1.09008 * 109.47089 * 180.02562 * 24 21 20 50 50 H 1.08999 * 109.47655 * 300.00088 * 24 21 20 51 51 H 1.09007 * 113.61375 * 220.01669 * 25 14 13 52 52 H 1.09001 * 113.61910 * 89.11591 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2898 1.0793 0.0000 4 6 1.7414 2.4830 0.0006 5 8 0.4812 2.5022 -0.6728 6 14 2.9321 3.6151 -0.8778 7 7 3.5851 0.8187 0.0052 8 6 3.9315 -0.4310 -0.0001 9 7 5.2385 -0.8927 0.0004 10 6 5.5065 -2.3329 0.0002 11 6 7.0180 -2.5703 0.0002 12 9 7.6990 -1.7354 -0.8922 13 6 7.6362 -2.6054 1.4077 14 6 7.3452 -4.1154 1.4124 15 1 6.3579 -4.3687 1.7986 16 6 8.4623 -4.9529 2.0382 17 7 8.2481 -5.0502 3.4842 18 6 9.1135 -5.7456 4.2484 19 8 10.0716 -6.2915 3.7381 20 8 8.9163 -5.8355 5.5772 21 6 9.8887 -6.5999 6.3377 22 6 11.2744 -5.9737 6.1691 23 6 9.5013 -6.5890 7.8178 24 6 9.9152 -8.0421 5.8276 25 6 7.4087 -4.0525 -0.1228 26 16 2.5413 -1.4261 -0.0001 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5141 0.8898 29 1 -0.3634 0.5135 -0.8901 30 1 1.6095 2.8212 1.0283 31 1 0.5231 2.2127 -1.5944 32 1 2.4026 5.0025 -0.8846 33 1 4.2560 3.5796 -0.2061 34 1 5.9755 -0.2621 0.0007 35 1 5.0682 -2.7841 -0.8900 36 1 5.0675 -2.7843 0.8900 37 1 8.6993 -2.3655 1.4239 38 1 7.0642 -2.0482 2.1499 39 1 8.4556 -5.9517 1.6019 40 1 9.4242 -4.4782 1.8447 41 1 7.4829 -4.6147 3.8915 42 1 11.2556 -4.9463 6.5325 43 1 12.0045 -6.5479 6.7397 44 1 11.5507 -5.9813 5.1147 45 1 8.5140 -7.0348 7.9383 46 1 10.2310 -7.1632 8.3886 47 1 9.4827 -5.5613 8.1809 48 1 10.1914 -8.0497 4.7732 49 1 10.6449 -8.6162 6.3988 50 1 8.9280 -8.4883 5.9477 51 1 6.6532 -4.6638 -0.6165 52 1 8.4097 -4.2083 -0.5252 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_27_16498494_15704122.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 13:15:39 Heat of formation + Delta-G solvation = -85.118520 kcal Electronic energy + Delta-G solvation = -33616.134662 eV Core-core repulsion = 28852.727377 eV Total energy + Delta-G solvation = -4763.407285 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 388.166 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -48.76615 -41.84648 -41.08876 -40.30499 -38.41282 -37.96130 -36.61752 -35.69117 -34.77013 -32.83171 -30.30847 -29.11948 -28.39457 -28.32738 -27.24663 -26.95965 -25.52856 -24.16547 -23.70903 -22.75655 -21.34796 -20.92237 -19.97943 -19.28982 -19.05003 -17.97863 -17.77169 -17.60485 -17.36900 -17.24857 -16.81195 -16.59923 -16.39317 -16.20737 -15.70550 -15.58149 -15.54033 -15.51420 -15.30763 -15.00862 -14.57402 -14.47335 -14.29847 -14.09951 -13.81715 -13.75174 -13.45947 -13.41864 -13.38074 -13.23373 -13.15652 -12.93707 -12.89271 -12.72996 -12.56498 -12.42240 -12.40068 -12.23172 -12.09560 -12.01900 -11.60295 -11.42135 -11.36426 -11.14825 -11.04472 -10.65418 -10.39174 -10.24706 -10.01033 -8.67386 -4.97763 -0.02910 0.12987 0.71730 1.14118 1.28871 1.70485 1.72959 1.80979 1.82666 2.10935 2.97858 3.06258 3.16935 3.20046 3.36278 3.42099 3.53970 3.59778 3.71790 3.76952 3.91890 3.98281 4.17246 4.21872 4.28345 4.32688 4.37169 4.49832 4.51462 4.54471 4.58622 4.64393 4.65402 4.72842 4.73859 4.76828 4.82334 4.85065 4.86542 4.89496 4.90811 4.95674 5.05859 5.08673 5.19368 5.24358 5.29049 5.34605 5.35766 5.50877 5.56949 6.16878 6.35934 6.66124 6.93153 7.31109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C -0.244 4.244 3 C 0.051 3.949 4 C -0.026 4.026 5 O -0.539 6.539 6 Si 0.786 3.214 7 N -0.575 5.575 8 C 0.306 3.694 9 N -0.693 5.693 10 C 0.120 3.880 11 C 0.079 3.921 12 F -0.210 7.210 13 C -0.150 4.150 14 C -0.107 4.107 15 H 0.132 0.868 16 C 0.150 3.850 17 N -0.699 5.699 18 C 0.641 3.359 19 O -0.596 6.596 20 O -0.370 6.370 21 C 0.127 3.873 22 C -0.180 4.180 23 C -0.138 4.138 24 C -0.180 4.180 25 C -0.131 4.131 26 S 0.138 5.862 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.095 0.905 30 H 0.113 0.887 31 H 0.395 0.605 32 H -0.293 1.293 33 H -0.304 1.304 34 H 0.412 0.588 35 H 0.093 0.907 36 H 0.109 0.891 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.075 0.925 40 H 0.064 0.936 41 H 0.418 0.582 42 H 0.060 0.940 43 H 0.086 0.914 44 H 0.063 0.937 45 H 0.070 0.930 46 H 0.098 0.902 47 H 0.068 0.932 48 H 0.064 0.936 49 H 0.086 0.914 50 H 0.063 0.937 51 H 0.111 0.889 52 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.167 -5.072 -0.280 5.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.368 4.368 3 C -0.079 4.079 4 C -0.140 4.140 5 O -0.346 6.346 6 Si 0.693 3.307 7 N -0.303 5.303 8 C -0.065 4.065 9 N -0.334 5.334 10 C -0.004 4.004 11 C 0.060 3.940 12 F -0.191 7.191 13 C -0.188 4.188 14 C -0.125 4.125 15 H 0.149 0.851 16 C 0.028 3.972 17 N -0.359 5.359 18 C 0.394 3.606 19 O -0.487 6.487 20 O -0.285 6.285 21 C 0.091 3.909 22 C -0.238 4.238 23 C -0.195 4.195 24 C -0.237 4.237 25 C -0.169 4.169 26 S 0.387 5.613 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.114 0.886 30 H 0.130 0.870 31 H 0.245 0.755 32 H -0.221 1.221 33 H -0.232 1.232 34 H 0.250 0.750 35 H 0.111 0.889 36 H 0.127 0.873 37 H 0.112 0.888 38 H 0.109 0.891 39 H 0.093 0.907 40 H 0.082 0.918 41 H 0.255 0.745 42 H 0.080 0.920 43 H 0.105 0.895 44 H 0.082 0.918 45 H 0.089 0.911 46 H 0.116 0.884 47 H 0.087 0.913 48 H 0.083 0.917 49 H 0.105 0.895 50 H 0.082 0.918 51 H 0.129 0.871 52 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.049 -5.351 0.143 5.732 hybrid contribution 0.239 1.281 0.683 1.471 sum -1.810 -4.070 0.825 4.530 Atomic orbital electron populations 1.20199 0.85227 1.02328 1.04003 1.25409 1.02191 0.92869 1.16283 1.20195 0.86647 0.97740 1.03306 1.24367 0.92584 0.95228 1.01851 1.86490 1.28040 1.89650 1.30389 0.93250 0.73973 0.74417 0.89068 1.65941 1.18100 1.17931 1.28297 1.23421 0.92423 0.91777 0.98921 1.43804 1.01672 1.07524 1.80363 1.22004 0.93501 0.79598 1.05277 1.22614 0.90327 0.91282 0.89730 1.92858 1.81151 1.74311 1.70753 1.23810 1.02810 0.97132 0.95036 1.22641 1.00245 0.93714 0.95926 0.85060 1.21350 0.98536 1.00912 0.76450 1.44700 1.28737 1.54640 1.07831 1.18390 0.82242 0.78830 0.81126 1.90915 1.32074 1.51257 1.74447 1.86308 1.53851 1.70121 1.18173 1.22338 0.86866 0.90296 0.91385 1.22476 0.96012 1.01438 1.03835 1.21892 1.03543 1.03856 0.90215 1.22470 1.03224 0.94752 1.03236 1.23595 1.05151 0.92457 0.95701 1.83696 0.95001 1.09265 1.73330 0.91445 0.91367 0.88650 0.86956 0.75483 1.22076 1.23193 0.75007 0.88903 0.87308 0.88800 0.89134 0.90711 0.91766 0.74540 0.92048 0.89511 0.91790 0.91091 0.88371 0.91278 0.91735 0.89549 0.91818 0.87099 0.87794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 0.13 8.91 71.23 0.63 0.77 16 2 C -0.24 -0.34 6.50 24.57 0.16 -0.18 16 3 C 0.05 0.22 5.91 41.41 0.24 0.46 16 4 C -0.03 -0.07 2.94 71.24 0.21 0.14 16 5 O -0.54 0.37 10.17 -148.98 -1.52 -1.14 16 6 Si 0.79 2.84 32.09 68.60 2.20 5.04 16 7 N -0.57 -3.87 8.96 -189.85 -1.70 -5.57 16 8 C 0.31 0.75 8.24 179.32 1.48 2.23 16 9 N -0.69 0.93 5.61 -351.01 -1.97 -1.04 16 10 C 0.12 -0.92 5.12 86.38 0.44 -0.48 16 11 C 0.08 -0.54 1.91 -10.27 -0.02 -0.56 16 12 F -0.21 -0.11 16.61 44.97 0.75 0.63 16 13 C -0.15 1.22 7.06 31.12 0.22 1.44 16 14 C -0.11 1.17 3.41 -10.27 -0.03 1.14 16 15 H 0.13 -1.97 7.72 -2.39 -0.02 -1.99 16 16 C 0.15 -0.80 5.51 86.38 0.48 -0.32 16 17 N -0.70 1.88 5.56 -590.85 -3.29 -1.41 16 18 C 0.64 3.21 8.06 129.79 1.05 4.26 16 19 O -0.60 -6.43 11.88 19.81 0.24 -6.19 16 20 O -0.37 -1.60 9.94 -55.49 -0.55 -2.15 16 21 C 0.13 0.29 1.13 -10.80 -0.01 0.28 16 22 C -0.18 -0.52 8.37 71.98 0.60 0.08 16 23 C -0.14 0.36 8.85 71.98 0.64 0.99 16 24 C -0.18 -0.43 8.37 71.98 0.60 0.17 16 25 C -0.13 1.33 7.12 31.12 0.22 1.56 16 26 S 0.14 -0.18 22.32 -56.49 -1.26 -1.44 16 27 H 0.07 -0.27 8.14 -2.39 -0.02 -0.29 16 28 H 0.07 -0.03 8.14 -2.39 -0.02 -0.05 16 29 H 0.10 -0.45 6.40 -2.39 -0.02 -0.47 16 30 H 0.11 0.42 7.96 -2.39 -0.02 0.41 16 31 H 0.39 -3.21 8.13 -74.06 -0.60 -3.81 16 32 H -0.29 -2.50 7.11 99.48 0.71 -1.80 16 33 H -0.30 -3.75 7.11 99.48 0.71 -3.04 16 34 H 0.41 0.21 8.15 -92.71 -0.76 -0.55 16 35 H 0.09 -0.84 8.14 -2.39 -0.02 -0.86 16 36 H 0.11 -1.26 7.39 -2.39 -0.02 -1.28 16 37 H 0.09 -0.52 7.90 -2.39 -0.02 -0.54 16 38 H 0.09 -0.78 8.10 -2.38 -0.02 -0.80 16 39 H 0.07 -0.30 8.14 -2.39 -0.02 -0.32 16 40 H 0.06 -0.16 7.84 -2.39 -0.02 -0.18 16 41 H 0.42 -3.11 8.58 -92.71 -0.80 -3.90 16 42 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 43 H 0.09 -0.04 8.14 -2.38 -0.02 -0.06 16 44 H 0.06 0.52 5.88 -2.39 -0.01 0.50 16 45 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 46 H 0.10 -0.56 8.14 -2.39 -0.02 -0.58 16 47 H 0.07 -0.18 8.14 -2.38 -0.02 -0.20 16 48 H 0.06 0.49 5.88 -2.39 -0.01 0.48 16 49 H 0.09 -0.07 8.14 -2.38 -0.02 -0.09 16 50 H 0.06 0.10 8.14 -2.39 -0.02 0.08 16 51 H 0.11 -1.49 8.10 -2.38 -0.02 -1.51 16 52 H 0.10 -0.90 8.10 -2.39 -0.02 -0.92 16 Total: 0.00 -21.85 430.45 -1.34 -23.18 By element: Atomic # 1 Polarization: -20.73 SS G_CDS: -1.15 Total: -21.88 kcal Atomic # 6 Polarization: 5.06 SS G_CDS: 6.91 Total: 11.97 kcal Atomic # 7 Polarization: -1.06 SS G_CDS: -6.95 Total: -8.02 kcal Atomic # 8 Polarization: -7.65 SS G_CDS: -1.83 Total: -9.48 kcal Atomic # 9 Polarization: -0.11 SS G_CDS: 0.75 Total: 0.63 kcal Atomic # 14 Polarization: 2.84 SS G_CDS: 2.20 Total: 5.04 kcal Atomic # 16 Polarization: -0.18 SS G_CDS: -1.26 Total: -1.44 kcal Total: -21.85 -1.34 -23.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_27_16498494_15704122.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.934 kcal (2) G-P(sol) polarization free energy of solvation -21.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds