Wall clock time and date at job start Thu Mar 4 2021 13:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47212 * 2 1 4 4 C 1.52995 * 109.47168 * 239.99695 * 2 1 3 5 5 O 1.45206 * 109.46694 * 119.99915 * 2 1 3 6 6 C 1.34636 * 117.00136 * 59.99990 * 5 2 1 7 7 O 1.21509 * 119.99990 * 0.02562 * 6 5 2 8 8 N 1.34779 * 119.99877 * 180.02562 * 6 5 2 9 9 C 1.46499 * 119.99872 * 180.02562 * 8 6 5 10 10 C 1.53000 * 109.46840 * 180.02562 * 9 8 6 11 11 H 1.08996 * 112.85005 * 316.18669 * 10 9 8 12 12 C 1.53775 * 113.61825 * 87.50296 * 10 9 8 13 13 C 1.53781 * 87.08301 * 89.11020 * 12 10 9 14 14 F 1.39890 * 113.61854 * 270.88458 * 13 12 10 15 15 C 1.53003 * 113.68697 * 139.99273 * 13 12 10 16 16 N 1.46496 * 109.47076 * 87.46674 * 15 13 12 17 17 C 1.39149 * 120.00013 * 179.97438 * 16 15 13 18 18 N 1.32336 * 119.71729 * 0.02562 * 17 16 15 19 19 C 1.32007 * 121.64890 * 179.97438 * 18 17 16 20 20 C 1.37987 * 120.89973 * 359.97438 * 19 18 17 21 21 C 1.50695 * 120.32869 * 179.97438 * 20 19 18 22 22 O 1.42900 * 109.46780 * 120.00273 * 21 20 19 23 23 Si 1.86304 * 109.47075 * 0.02562 * 21 20 19 24 24 C 1.38906 * 119.34552 * 0.02562 * 20 19 18 25 25 C 1.38444 * 118.48567 * 359.74553 * 24 20 19 26 26 F 1.35099 * 120.47413 * 180.26591 * 25 24 20 27 27 C 1.53779 * 87.07698 * 25.43618 * 13 12 10 28 28 H 1.08994 * 109.47245 * 300.00365 * 1 2 3 29 29 H 1.09006 * 109.47200 * 60.00393 * 1 2 3 30 30 H 1.09003 * 109.47113 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47015 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.46468 * 299.99903 * 3 2 1 33 33 H 1.08995 * 109.46581 * 59.99548 * 3 2 1 34 34 H 1.09003 * 109.47357 * 300.00161 * 4 2 1 35 35 H 1.08993 * 109.47323 * 60.00149 * 4 2 1 36 36 H 1.08999 * 109.46974 * 180.02562 * 4 2 1 37 37 H 0.97000 * 119.99708 * 359.97438 * 8 6 5 38 38 H 1.09002 * 109.47391 * 59.99686 * 9 8 6 39 39 H 1.09001 * 109.46813 * 299.99742 * 9 8 6 40 40 H 1.09001 * 113.61743 * 203.66349 * 12 10 9 41 41 H 1.09010 * 113.61239 * 334.56448 * 12 10 9 42 42 H 1.09004 * 109.46848 * 207.46863 * 15 13 12 43 43 H 1.08998 * 109.47065 * 327.46514 * 15 13 12 44 44 H 0.96994 * 120.00033 * 0.02562 * 16 15 13 45 45 H 1.08000 * 119.55262 * 179.97438 * 19 18 17 46 46 H 1.09000 * 109.47815 * 240.00581 * 21 20 19 47 47 H 0.96697 * 114.00669 * 300.00467 * 22 21 20 48 48 H 1.48499 * 110.00262 * 58.67282 * 23 21 20 49 49 H 1.48499 * 109.99894 * 179.97438 * 23 21 20 50 50 H 1.08001 * 120.75670 * 179.97438 * 24 20 19 51 51 H 1.09007 * 113.61375 * 220.01669 * 27 13 12 52 52 H 1.08997 * 113.69307 * 89.12547 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0139 -0.6845 1.1856 6 6 1.6521 -1.9723 1.3384 7 8 0.9515 -2.5097 0.5037 8 7 2.0670 -2.6654 2.4174 9 6 1.6738 -4.0668 2.5833 10 6 2.2727 -4.6143 3.8804 11 1 3.3132 -4.3226 4.0224 12 6 1.3895 -4.3743 5.1162 13 6 0.7146 -5.7188 4.7976 14 9 -0.3797 -5.6058 3.9335 15 6 0.4082 -6.5618 6.0372 16 7 -0.9050 -6.1890 6.5688 17 6 -1.4030 -6.8249 7.7019 18 7 -0.6853 -7.7653 8.2951 19 6 -1.1204 -8.3927 9.3720 20 6 -2.3484 -8.0876 9.9223 21 6 -2.8327 -8.8124 11.1516 22 8 -3.0506 -7.8711 12.2044 23 14 -1.5510 -10.0547 11.6853 24 6 -3.1344 -7.1066 9.3313 25 6 -2.6504 -6.4620 8.2057 26 9 -3.3790 -5.4978 7.6018 27 6 2.0203 -6.1168 4.0894 28 1 -0.3633 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9562 -0.8900 33 1 1.6766 1.9563 0.8899 34 1 1.6766 -1.7490 -1.2492 35 1 1.6767 -0.2076 -2.1391 36 1 3.1300 -0.7217 -1.2489 37 1 2.6266 -2.2364 3.0835 38 1 2.0410 -4.6497 1.7387 39 1 0.5869 -4.1364 2.6277 40 1 1.9429 -4.3752 6.0553 41 1 0.7235 -3.5170 5.0170 42 1 0.4043 -7.6177 5.7666 43 1 1.1709 -6.3838 6.7952 44 1 -1.4277 -5.4994 6.1306 45 1 -0.5068 -9.1553 9.8286 46 1 -3.7664 -9.3275 10.9256 47 1 -2.2605 -7.3749 12.4584 48 1 -0.2643 -9.3684 11.9658 49 1 -2.0164 -10.7757 12.8972 50 1 -4.0994 -6.8499 9.7427 51 1 1.8636 -6.6664 3.1612 52 1 2.7470 -6.5943 4.7465 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_27_16498494_17656566.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 13:15:43 Heat of formation + Delta-G solvation = -132.905769 kcal Electronic energy + Delta-G solvation = -35854.767798 eV Core-core repulsion = 30686.219699 eV Total energy + Delta-G solvation = -5168.548098 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 386.185 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -49.99405 -48.91323 -41.86297 -41.42362 -39.98971 -38.42187 -38.14235 -36.70208 -35.70842 -34.77210 -33.30764 -32.06494 -29.83991 -28.41060 -28.33686 -27.56962 -27.01558 -26.11736 -24.79922 -23.37508 -22.94371 -22.72380 -21.28057 -20.29368 -19.53166 -19.07533 -18.58194 -18.41269 -17.88923 -17.64988 -17.42446 -17.17409 -17.05051 -16.91774 -16.41164 -16.18795 -16.09293 -15.86481 -15.70798 -15.53630 -15.48541 -15.27022 -15.07037 -14.76085 -14.53762 -14.32156 -14.18119 -14.07088 -14.01728 -13.69259 -13.44503 -13.38139 -13.24728 -13.04717 -12.95576 -12.90379 -12.67000 -12.56894 -12.42511 -12.29254 -12.09595 -12.07151 -11.53289 -11.44173 -11.31600 -11.22633 -11.09966 -10.81871 -10.68392 -10.55217 -10.26873 -8.81787 -4.87885 -0.10910 0.07618 1.10591 1.32294 1.63994 1.70132 1.87509 2.01130 2.51342 2.98285 3.02037 3.11079 3.18527 3.25515 3.37704 3.41434 3.45011 3.58383 3.59495 3.70610 3.75630 3.83795 3.90629 3.96699 4.00434 4.32009 4.41458 4.44590 4.51268 4.54303 4.57043 4.57321 4.60765 4.69772 4.69966 4.72445 4.72987 4.75414 4.81140 4.84111 4.87554 4.94703 4.96535 4.99930 5.09280 5.21104 5.23008 5.27404 5.32009 5.33095 5.54498 5.87685 6.06954 6.33981 6.50699 6.87776 7.28848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.127 3.873 3 C -0.137 4.137 4 C -0.180 4.180 5 O -0.368 6.368 6 C 0.641 3.359 7 O -0.596 6.596 8 N -0.697 5.697 9 C 0.148 3.852 10 C -0.116 4.116 11 H 0.122 0.878 12 C -0.144 4.144 13 C 0.066 3.934 14 F -0.203 7.203 15 C 0.130 3.870 16 N -0.717 5.717 17 C 0.382 3.618 18 N -0.522 5.522 19 C 0.150 3.850 20 C -0.203 4.203 21 C -0.070 4.070 22 O -0.549 6.549 23 Si 0.768 3.232 24 C -0.040 4.040 25 C -0.041 4.041 26 F -0.144 7.144 27 C -0.128 4.128 28 H 0.061 0.939 29 H 0.087 0.913 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.099 0.901 33 H 0.069 0.931 34 H 0.061 0.939 35 H 0.087 0.913 36 H 0.063 0.937 37 H 0.418 0.582 38 H 0.068 0.932 39 H 0.061 0.939 40 H 0.128 0.872 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.102 0.898 44 H 0.413 0.587 45 H 0.187 0.813 46 H 0.128 0.872 47 H 0.387 0.613 48 H -0.274 1.274 49 H -0.302 1.302 50 H 0.153 0.847 51 H 0.085 0.915 52 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.201 -1.000 1.957 6.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.091 3.909 3 C -0.194 4.194 4 C -0.237 4.237 5 O -0.283 6.283 6 C 0.394 3.606 7 O -0.488 6.488 8 N -0.357 5.357 9 C 0.025 3.975 10 C -0.135 4.135 11 H 0.140 0.860 12 C -0.181 4.181 13 C 0.048 3.952 14 F -0.183 7.183 15 C 0.006 3.994 16 N -0.350 5.350 17 C 0.144 3.856 18 N -0.239 5.239 19 C -0.007 4.007 20 C -0.208 4.208 21 C -0.179 4.179 22 O -0.357 6.357 23 Si 0.672 3.328 24 C -0.066 4.066 25 C -0.067 4.067 26 F -0.123 7.123 27 C -0.166 4.166 28 H 0.080 0.920 29 H 0.106 0.894 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.117 0.883 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.106 0.894 36 H 0.082 0.918 37 H 0.255 0.745 38 H 0.086 0.914 39 H 0.079 0.921 40 H 0.146 0.854 41 H 0.091 0.909 42 H 0.095 0.905 43 H 0.120 0.880 44 H 0.250 0.750 45 H 0.204 0.796 46 H 0.146 0.854 47 H 0.236 0.764 48 H -0.200 1.200 49 H -0.230 1.230 50 H 0.171 0.829 51 H 0.103 0.897 52 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 6.739 -1.890 1.584 7.176 hybrid contribution -1.529 1.991 0.521 2.564 sum 5.210 0.101 2.105 5.620 Atomic orbital electron populations 1.22479 0.94232 1.03554 1.03527 1.22364 0.94343 0.92689 0.81547 1.21889 1.02537 0.90710 1.04262 1.22471 1.01727 1.02163 0.97347 1.86306 1.71518 1.23168 1.47301 1.18371 0.78786 0.80859 0.82558 1.90916 1.42293 1.71076 1.44465 1.44644 1.55295 1.12664 1.23129 1.21273 0.99857 0.78523 0.97814 1.22472 1.01818 0.96818 0.92368 0.85979 1.23763 0.98558 0.95602 1.00184 1.22493 0.84630 0.99310 0.88798 1.92832 1.56845 1.96921 1.71737 1.21851 0.84635 0.99217 0.93694 1.44463 1.21147 1.42156 1.27277 1.18523 0.87870 0.90687 0.88520 1.67352 1.34444 1.09731 1.12411 1.22737 0.92788 0.95515 0.89658 1.20933 0.96725 1.01588 1.01564 1.25084 1.11220 0.96822 0.84778 1.86586 1.39664 1.55416 1.54069 0.94162 0.74210 0.80120 0.84326 1.21432 1.00662 0.93121 0.91394 1.18198 0.92838 0.96513 0.99137 1.91466 1.76821 1.61181 1.82819 1.23587 0.94813 0.95845 1.02348 0.91991 0.89381 0.92038 0.91013 0.88284 0.91195 0.91958 0.89419 0.91751 0.74471 0.91394 0.92082 0.85413 0.90945 0.90473 0.88026 0.74959 0.79637 0.85438 0.76385 1.19968 1.22959 0.82909 0.89670 0.84343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.83 8.37 71.98 0.60 -0.22 16 2 C 0.13 0.48 1.13 -10.79 -0.01 0.47 16 3 C -0.14 0.23 8.85 71.98 0.64 0.87 16 4 C -0.18 -0.72 8.37 71.98 0.60 -0.11 16 5 O -0.37 -2.29 9.94 -55.45 -0.55 -2.84 16 6 C 0.64 5.06 8.06 129.79 1.05 6.10 16 7 O -0.60 -8.38 11.88 19.81 0.24 -8.14 16 8 N -0.70 -0.51 5.56 -590.85 -3.29 -3.80 16 9 C 0.15 -0.06 5.28 86.38 0.46 0.40 16 10 C -0.12 0.90 3.94 -10.27 -0.04 0.86 16 11 H 0.12 -1.43 8.14 -2.39 -0.02 -1.45 16 12 C -0.14 1.05 7.07 31.12 0.22 1.27 16 13 C 0.07 -0.29 1.73 -10.27 -0.02 -0.30 16 14 F -0.20 -0.64 14.79 44.97 0.67 0.02 16 15 C 0.13 -0.48 5.45 86.38 0.47 -0.01 16 16 N -0.72 -0.62 5.60 -344.81 -1.93 -2.55 16 17 C 0.38 1.25 7.49 133.08 1.00 2.24 16 18 N -0.52 -0.87 9.57 -193.03 -1.85 -2.72 16 19 C 0.15 -0.29 9.84 84.61 0.83 0.54 16 20 C -0.20 0.31 5.40 -19.77 -0.11 0.20 16 21 C -0.07 0.23 2.84 71.23 0.20 0.43 16 22 O -0.55 -0.11 12.78 -148.98 -1.90 -2.02 16 23 Si 0.77 -3.97 29.82 68.60 2.05 -1.93 16 24 C -0.04 -0.06 9.75 22.48 0.22 0.16 16 25 C -0.04 -0.18 7.35 22.59 0.17 -0.01 16 26 F -0.14 -1.00 16.65 44.97 0.75 -0.25 16 27 C -0.13 1.08 7.12 31.12 0.22 1.30 16 28 H 0.06 0.24 8.14 -2.39 -0.02 0.22 16 29 H 0.09 0.08 8.14 -2.38 -0.02 0.06 16 30 H 0.06 0.64 5.88 -2.39 -0.01 0.63 16 31 H 0.07 -0.16 8.14 -2.39 -0.02 -0.18 16 32 H 0.10 -0.49 8.14 -2.39 -0.02 -0.51 16 33 H 0.07 -0.13 8.14 -2.39 -0.02 -0.15 16 34 H 0.06 0.60 5.88 -2.39 -0.01 0.59 16 35 H 0.09 0.04 8.14 -2.39 -0.02 0.02 16 36 H 0.06 0.19 8.14 -2.39 -0.02 0.17 16 37 H 0.42 -1.95 8.58 -92.71 -0.80 -2.74 16 38 H 0.07 0.10 8.14 -2.39 -0.02 0.08 16 39 H 0.06 0.28 6.31 -2.39 -0.02 0.27 16 40 H 0.13 -1.43 7.90 -2.39 -0.02 -1.45 16 41 H 0.07 -0.29 8.10 -2.38 -0.02 -0.31 16 42 H 0.08 -0.21 8.14 -2.39 -0.02 -0.23 16 43 H 0.10 -0.65 7.85 -2.39 -0.02 -0.67 16 44 H 0.41 0.72 7.50 -92.71 -0.70 0.02 16 45 H 0.19 -1.39 4.88 -2.91 -0.01 -1.40 16 46 H 0.13 -0.61 7.96 -2.39 -0.02 -0.63 16 47 H 0.39 -2.09 8.70 -74.06 -0.64 -2.74 16 48 H -0.27 0.60 7.11 99.48 0.71 1.31 16 49 H -0.30 -0.94 7.11 99.48 0.71 -0.23 16 50 H 0.15 0.04 8.06 -2.91 -0.02 0.02 16 51 H 0.08 -0.55 8.10 -2.38 -0.02 -0.57 16 52 H 0.14 -1.86 8.10 -2.39 -0.02 -1.88 16 Total: 0.00 -21.38 424.06 -0.44 -21.82 By element: Atomic # 1 Polarization: -10.65 SS G_CDS: -1.11 Total: -11.76 kcal Atomic # 6 Polarization: 7.67 SS G_CDS: 6.50 Total: 14.17 kcal Atomic # 7 Polarization: -2.01 SS G_CDS: -7.06 Total: -9.07 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: -2.22 Total: -13.00 kcal Atomic # 9 Polarization: -1.64 SS G_CDS: 1.41 Total: -0.23 kcal Atomic # 14 Polarization: -3.97 SS G_CDS: 2.05 Total: -1.93 kcal Total: -21.38 -0.44 -21.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_27_16498494_17656566.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.088 kcal (2) G-P(sol) polarization free energy of solvation -21.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds