Wall clock time and date at job start Thu Mar 4 2021 13:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.33328 * 125.94907 * 2 1 4 4 C 1.50699 * 122.71372 * 0.02562 * 3 2 1 5 5 O 1.42893 * 109.47253 * 330.00693 * 4 3 2 6 6 Si 1.86294 * 109.47364 * 210.00139 * 4 3 2 7 7 N 1.32118 * 114.57535 * 180.02562 * 3 2 1 8 8 C 1.29690 * 116.86601 * 359.97438 * 7 3 2 9 9 N 1.38615 * 124.94741 * 179.97438 * 8 7 3 10 10 C 1.46497 * 119.99977 * 179.97438 * 9 8 7 11 11 C 1.53000 * 109.47073 * 179.97438 * 10 9 8 12 12 F 1.39891 * 112.85116 * 316.19899 * 11 10 9 13 13 C 1.53957 * 113.74243 * 87.40407 * 11 10 9 14 14 C 1.53780 * 87.01991 * 139.93926 * 13 11 10 15 15 H 1.09002 * 113.60826 * 89.22908 * 14 13 11 16 16 C 1.53003 * 113.61507 * 220.04606 * 14 13 11 17 17 N 1.46497 * 109.47221 * 274.13732 * 16 14 13 18 18 C 1.34777 * 119.99707 * 179.97438 * 17 16 14 19 19 O 1.21507 * 120.00068 * 0.02562 * 18 17 16 20 20 O 1.34644 * 119.99419 * 179.97438 * 18 17 16 21 21 C 1.45206 * 116.99182 * 180.02562 * 20 18 17 22 22 C 1.52997 * 109.47226 * 60.00595 * 21 20 18 23 23 C 1.52992 * 109.47178 * 300.00057 * 21 20 18 24 24 C 1.53006 * 109.46497 * 180.02562 * 21 20 18 25 25 C 1.53778 * 113.61254 * 185.00132 * 11 10 9 26 26 S 1.70958 * 110.10262 * 0.24385 * 8 7 3 27 27 H 1.08997 * 109.47208 * 89.99567 * 1 2 3 28 28 H 1.08994 * 109.47012 * 210.00328 * 1 2 3 29 29 H 1.09001 * 109.46894 * 329.99750 * 1 2 3 30 30 H 1.09005 * 109.46961 * 90.00017 * 4 3 2 31 31 H 0.96704 * 114.00020 * 299.99386 * 5 4 3 32 32 H 1.48500 * 110.00093 * 58.68146 * 6 4 3 33 33 H 1.48499 * 110.00341 * 180.02562 * 6 4 3 34 34 H 0.97003 * 120.00186 * 0.02562 * 9 8 7 35 35 H 1.09003 * 109.46764 * 60.00000 * 10 9 8 36 36 H 1.09000 * 109.47401 * 299.99970 * 10 9 8 37 37 H 1.09010 * 113.61134 * 25.42349 * 13 11 10 38 38 H 1.08994 * 113.67164 * 254.47377 * 13 11 10 39 39 H 1.09006 * 109.46508 * 154.13794 * 16 14 13 40 40 H 1.09000 * 109.46978 * 34.14261 * 16 14 13 41 41 H 0.97000 * 119.99727 * 0.02562 * 17 16 14 42 42 H 1.09002 * 109.47153 * 299.99431 * 22 21 20 43 43 H 1.09001 * 109.46832 * 179.97438 * 22 21 20 44 44 H 1.09004 * 109.47261 * 59.99603 * 22 21 20 45 45 H 1.09001 * 109.47066 * 180.02562 * 23 21 20 46 46 H 1.08996 * 109.47747 * 300.00217 * 23 21 20 47 47 H 1.09002 * 109.47103 * 60.00629 * 23 21 20 48 48 H 1.08993 * 109.46955 * 300.00264 * 24 21 20 49 49 H 1.09000 * 109.47050 * 60.00093 * 24 21 20 50 50 H 1.09001 * 109.47002 * 179.97438 * 24 21 20 51 51 H 1.08997 * 113.61922 * 105.38867 * 25 11 10 52 52 H 1.09001 * 113.69220 * 334.49345 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2898 1.0793 0.0000 4 6 1.7415 2.4830 0.0006 5 8 0.4811 2.5024 -0.6724 6 14 2.9320 3.6152 -0.8778 7 7 3.5850 0.8188 -0.0005 8 6 3.9315 -0.4310 -0.0005 9 7 5.2385 -0.8927 -0.0015 10 6 5.5065 -2.3329 -0.0007 11 6 7.0180 -2.5703 -0.0028 12 9 7.6977 -1.7361 -0.8967 13 6 7.6424 -2.6023 1.4042 14 6 8.5157 -3.7645 0.9027 15 1 9.4552 -3.4424 0.4536 16 6 8.7013 -4.8804 1.9329 17 7 9.8267 -4.5519 2.8113 18 6 10.1772 -5.3960 3.8017 19 8 9.5601 -6.4298 3.9658 20 8 11.2119 -5.0942 4.6088 21 6 11.5333 -6.0499 5.6537 22 6 11.8848 -7.3980 5.0213 23 6 10.3264 -6.2196 6.5784 24 6 12.7272 -5.5387 6.4625 25 6 7.4085 -4.0526 -0.1250 26 16 2.5413 -1.4260 -0.0065 27 1 -0.3633 0.0001 -1.0276 28 1 -0.3633 -0.8899 0.5139 29 1 -0.3633 0.8900 0.5139 30 1 1.6097 2.8212 1.0284 31 1 0.5229 2.2128 -1.5942 32 1 3.1448 3.1465 -2.2707 33 1 2.4030 5.0028 -0.8836 34 1 5.9756 -0.2621 -0.0019 35 1 5.0669 -2.7847 -0.8900 36 1 5.0688 -2.7835 0.8900 37 1 6.9403 -2.8899 2.1869 38 1 8.2095 -1.7051 1.6517 39 1 8.9042 -5.8197 1.4183 40 1 7.7933 -4.9807 2.5275 41 1 10.3191 -3.7264 2.6805 42 1 11.0340 -7.7620 4.4453 43 1 12.1265 -8.1152 5.8057 44 1 12.7447 -7.2771 4.3624 45 1 10.5678 -6.9366 7.3631 46 1 10.0759 -5.2592 7.0290 47 1 9.4756 -6.5836 6.0024 48 1 13.5871 -5.4175 5.8039 49 1 12.4764 -4.5784 6.9131 50 1 12.9683 -6.2558 7.2472 51 1 7.7874 -4.3246 -1.1102 52 1 6.6433 -4.7386 0.2384 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_27_16498592_15704122.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 13:15:58 Heat of formation + Delta-G solvation = -84.736592 kcal Electronic energy + Delta-G solvation = -33470.432657 eV Core-core repulsion = 28707.041934 eV Total energy + Delta-G solvation = -4763.390723 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 388.166 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -48.85779 -41.81282 -41.09106 -39.99723 -38.38478 -38.04010 -36.70619 -35.65753 -34.73898 -32.90524 -30.44965 -29.11971 -28.37225 -28.30832 -27.31276 -26.95003 -25.58909 -24.21126 -23.48259 -22.43926 -21.35575 -20.73228 -20.43116 -19.27739 -19.04102 -18.10518 -17.79284 -17.53292 -17.33846 -17.15397 -16.77160 -16.64086 -16.48907 -16.10300 -15.78785 -15.69818 -15.53294 -15.43482 -15.33167 -14.93358 -14.54088 -14.44030 -14.31168 -13.94458 -13.82752 -13.81056 -13.67345 -13.37993 -13.34979 -13.32524 -13.11815 -12.91971 -12.87184 -12.83272 -12.54095 -12.47887 -12.36173 -12.17975 -12.05838 -12.00308 -11.42335 -11.40174 -11.37973 -11.12275 -11.08511 -10.67677 -10.52678 -10.21418 -10.05160 -8.67164 -4.80174 -0.04552 0.12109 0.70797 1.17106 1.28083 1.65093 1.75494 1.79894 1.84783 1.98026 3.01988 3.10613 3.14482 3.24291 3.28149 3.45988 3.52904 3.58558 3.73891 3.79132 3.94015 4.00583 4.14228 4.23460 4.29679 4.31797 4.39980 4.51108 4.54466 4.60780 4.61736 4.66994 4.72822 4.75479 4.76073 4.78424 4.82980 4.86071 4.87049 4.88939 4.92579 4.99681 5.07031 5.07763 5.21981 5.26515 5.29593 5.33033 5.39655 5.52091 5.59088 6.21654 6.37968 6.40194 6.89421 7.33176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.255 4.255 3 C 0.056 3.944 4 C -0.039 4.039 5 O -0.532 6.532 6 Si 0.777 3.223 7 N -0.559 5.559 8 C 0.310 3.690 9 N -0.688 5.688 10 C 0.111 3.889 11 C 0.083 3.917 12 F -0.197 7.197 13 C -0.145 4.145 14 C -0.114 4.114 15 H 0.108 0.892 16 C 0.150 3.850 17 N -0.700 5.700 18 C 0.641 3.359 19 O -0.595 6.595 20 O -0.371 6.371 21 C 0.127 3.873 22 C -0.180 4.180 23 C -0.180 4.180 24 C -0.138 4.138 25 C -0.131 4.131 26 S 0.126 5.874 27 H 0.076 0.924 28 H 0.066 0.934 29 H 0.086 0.914 30 H 0.134 0.866 31 H 0.384 0.616 32 H -0.308 1.308 33 H -0.291 1.291 34 H 0.416 0.584 35 H 0.085 0.915 36 H 0.106 0.894 37 H 0.116 0.884 38 H 0.086 0.914 39 H 0.070 0.930 40 H 0.076 0.924 41 H 0.416 0.584 42 H 0.064 0.936 43 H 0.086 0.914 44 H 0.061 0.939 45 H 0.086 0.914 46 H 0.061 0.939 47 H 0.065 0.935 48 H 0.069 0.931 49 H 0.069 0.931 50 H 0.098 0.902 51 H 0.093 0.907 52 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.529 -3.100 1.706 4.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.378 4.378 3 C -0.074 4.074 4 C -0.152 4.152 5 O -0.338 6.338 6 Si 0.683 3.317 7 N -0.287 5.287 8 C -0.062 4.062 9 N -0.329 5.329 10 C -0.013 4.013 11 C 0.065 3.935 12 F -0.178 7.178 13 C -0.182 4.182 14 C -0.132 4.132 15 H 0.126 0.874 16 C 0.028 3.972 17 N -0.361 5.361 18 C 0.395 3.605 19 O -0.486 6.486 20 O -0.286 6.286 21 C 0.091 3.909 22 C -0.237 4.237 23 C -0.237 4.237 24 C -0.195 4.195 25 C -0.170 4.170 26 S 0.374 5.626 27 H 0.095 0.905 28 H 0.085 0.915 29 H 0.105 0.895 30 H 0.151 0.849 31 H 0.234 0.766 32 H -0.235 1.235 33 H -0.218 1.218 34 H 0.255 0.745 35 H 0.103 0.897 36 H 0.124 0.876 37 H 0.134 0.866 38 H 0.105 0.895 39 H 0.088 0.912 40 H 0.094 0.906 41 H 0.253 0.747 42 H 0.083 0.917 43 H 0.105 0.895 44 H 0.080 0.920 45 H 0.104 0.896 46 H 0.081 0.919 47 H 0.083 0.917 48 H 0.088 0.912 49 H 0.088 0.912 50 H 0.116 0.884 51 H 0.111 0.889 52 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 2.511 -3.767 1.731 4.847 hybrid contribution -0.388 0.949 -1.028 1.452 sum 2.124 -2.818 0.703 3.598 Atomic orbital electron populations 1.20209 0.85594 1.03279 1.03095 1.25369 1.02148 0.93120 1.17206 1.20220 0.86946 0.97615 1.02621 1.24435 0.91679 0.94955 1.04084 1.86583 1.28423 1.89150 1.29694 0.92913 0.85460 0.74040 0.79305 1.65712 1.17357 1.17310 1.28356 1.23461 0.92498 0.91624 0.98585 1.43821 1.01481 1.07620 1.79994 1.22204 0.94761 0.79569 1.04797 1.22096 0.89267 0.91718 0.90461 1.92870 1.81355 1.73540 1.69999 1.23845 0.99498 0.99909 0.94958 1.22705 0.99503 0.95061 0.95948 0.87404 1.21389 0.87679 0.98076 0.90062 1.44738 1.35932 1.24166 1.31234 1.18373 0.79345 0.82792 0.80017 1.90909 1.56860 1.26783 1.74013 1.86314 1.47660 1.51186 1.43390 1.22341 0.96398 0.87485 0.84689 1.22473 1.02439 0.96369 1.02429 1.22468 0.98261 1.03058 0.99886 1.21893 0.95128 1.02924 0.99585 1.23581 0.98834 0.93443 1.01121 1.83763 0.95547 1.09577 1.73673 0.90544 0.91492 0.89507 0.84876 0.76620 1.23528 1.21825 0.74507 0.89732 0.87576 0.86595 0.89533 0.91183 0.90556 0.74729 0.91685 0.89533 0.92008 0.89559 0.91946 0.91654 0.91237 0.91197 0.88375 0.88878 0.85409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 0.01 8.95 71.24 0.64 0.65 16 2 C -0.26 -0.77 6.50 24.58 0.16 -0.61 16 3 C 0.06 0.26 5.92 41.40 0.25 0.51 16 4 C -0.04 -0.11 2.82 71.24 0.20 0.09 16 5 O -0.53 -1.26 9.89 -148.98 -1.47 -2.73 16 6 Si 0.78 3.07 32.08 68.60 2.20 5.27 16 7 N -0.56 -3.12 8.95 -189.86 -1.70 -4.82 16 8 C 0.31 0.73 8.24 179.32 1.48 2.21 16 9 N -0.69 1.49 5.61 -351.01 -1.97 -0.48 16 10 C 0.11 -0.83 5.29 86.38 0.46 -0.38 16 11 C 0.08 -0.67 1.74 -10.21 -0.02 -0.68 16 12 F -0.20 0.34 16.58 44.97 0.75 1.09 16 13 C -0.14 1.42 7.09 31.18 0.22 1.65 16 14 C -0.11 1.11 3.73 -10.27 -0.04 1.07 16 15 H 0.11 -1.00 8.14 -2.39 -0.02 -1.02 16 16 C 0.15 -0.89 5.50 86.38 0.47 -0.42 16 17 N -0.70 1.77 5.56 -590.84 -3.29 -1.52 16 18 C 0.64 3.01 8.06 129.79 1.05 4.06 16 19 O -0.59 -5.93 11.88 19.82 0.24 -5.70 16 20 O -0.37 -1.56 9.94 -55.53 -0.55 -2.11 16 21 C 0.13 0.25 1.13 -10.79 -0.01 0.24 16 22 C -0.18 -0.42 8.37 71.98 0.60 0.19 16 23 C -0.18 -0.38 8.37 71.98 0.60 0.22 16 24 C -0.14 0.38 8.85 71.98 0.64 1.01 16 25 C -0.13 1.42 7.10 31.12 0.22 1.64 16 26 S 0.13 0.03 22.32 -56.49 -1.26 -1.23 16 27 H 0.08 -0.14 8.14 -2.39 -0.02 -0.16 16 28 H 0.07 -0.10 8.14 -2.39 -0.02 -0.12 16 29 H 0.09 0.09 6.61 -2.39 -0.02 0.08 16 30 H 0.13 0.10 7.96 -2.38 -0.02 0.08 16 31 H 0.38 -0.77 8.68 -74.05 -0.64 -1.41 16 32 H -0.31 -3.26 7.11 99.48 0.71 -2.55 16 33 H -0.29 -2.54 7.11 99.48 0.71 -1.83 16 34 H 0.42 -0.76 8.15 -92.71 -0.76 -1.51 16 35 H 0.08 -0.67 8.14 -2.39 -0.02 -0.69 16 36 H 0.11 -1.13 7.86 -2.39 -0.02 -1.15 16 37 H 0.12 -1.32 7.68 -2.38 -0.02 -1.34 16 38 H 0.09 -0.76 8.14 -2.39 -0.02 -0.78 16 39 H 0.07 -0.29 8.14 -2.38 -0.02 -0.30 16 40 H 0.08 -0.43 7.87 -2.39 -0.02 -0.44 16 41 H 0.42 -2.66 8.58 -92.71 -0.80 -3.46 16 42 H 0.06 0.48 5.88 -2.39 -0.01 0.46 16 43 H 0.09 -0.08 8.14 -2.39 -0.02 -0.10 16 44 H 0.06 0.11 8.14 -2.38 -0.02 0.09 16 45 H 0.09 -0.09 8.14 -2.39 -0.02 -0.11 16 46 H 0.06 0.09 8.14 -2.39 -0.02 0.07 16 47 H 0.06 0.46 5.88 -2.39 -0.01 0.45 16 48 H 0.07 -0.20 8.14 -2.39 -0.02 -0.22 16 49 H 0.07 -0.20 8.14 -2.39 -0.02 -0.22 16 50 H 0.10 -0.58 8.14 -2.39 -0.02 -0.60 16 51 H 0.09 -0.93 8.14 -2.39 -0.02 -0.95 16 52 H 0.13 -1.82 8.06 -2.39 -0.02 -1.84 16 Total: 0.00 -19.03 431.89 -1.33 -20.36 By element: Atomic # 1 Polarization: -18.39 SS G_CDS: -1.19 Total: -19.58 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: 6.91 Total: 11.45 kcal Atomic # 7 Polarization: 0.14 SS G_CDS: -6.95 Total: -6.82 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: -1.79 Total: -10.54 kcal Atomic # 9 Polarization: 0.34 SS G_CDS: 0.75 Total: 1.09 kcal Atomic # 14 Polarization: 3.07 SS G_CDS: 2.20 Total: 5.27 kcal Atomic # 16 Polarization: 0.03 SS G_CDS: -1.26 Total: -1.23 kcal Total: -19.03 -1.33 -20.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_27_16498592_15704122.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.375 kcal (2) G-P(sol) polarization free energy of solvation -19.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds