Wall clock time and date at job start Thu Mar 4 2021 13:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52998 * 109.47110 * 2 1 4 4 C 1.52999 * 109.47382 * 240.00065 * 2 1 3 5 5 O 1.45197 * 109.47488 * 120.00021 * 2 1 3 6 6 C 1.34643 * 117.00029 * 59.99710 * 5 2 1 7 7 O 1.21506 * 119.99471 * 0.02562 * 6 5 2 8 8 N 1.34769 * 120.00087 * 179.97438 * 6 5 2 9 9 C 1.46503 * 120.00135 * 179.97438 * 8 6 5 10 10 C 1.52995 * 109.47038 * 180.02562 * 9 8 6 11 11 H 1.08998 * 112.85122 * 316.19968 * 10 9 8 12 12 C 1.53960 * 113.66676 * 87.44342 * 10 9 8 13 13 C 1.53781 * 87.01818 * 139.92777 * 12 10 9 14 14 F 1.39902 * 113.61062 * 89.23101 * 13 12 10 15 15 C 1.53003 * 113.61455 * 220.04589 * 13 12 10 16 16 N 1.46499 * 109.47277 * 279.14128 * 15 13 12 17 17 C 1.39143 * 119.99665 * 180.02562 * 16 15 13 18 18 N 1.32333 * 119.72053 * 0.26893 * 17 16 15 19 19 C 1.32011 * 121.64646 * 180.29769 * 18 17 16 20 20 C 1.37988 * 120.89866 * 359.42528 * 19 18 17 21 21 C 1.50704 * 120.32706 * 180.25888 * 20 19 18 22 22 O 1.42896 * 109.47160 * 245.00603 * 21 20 19 23 23 Si 1.86301 * 109.46917 * 5.00239 * 21 20 19 24 24 C 1.38902 * 119.34927 * 0.28535 * 20 19 18 25 25 C 1.38444 * 118.48279 * 359.97438 * 24 20 19 26 26 F 1.35103 * 120.47109 * 179.97438 * 25 24 20 27 27 C 1.53780 * 87.17661 * 334.64089 * 13 12 10 28 28 H 1.09000 * 109.46964 * 300.00170 * 1 2 3 29 29 H 1.09006 * 109.47382 * 59.99875 * 1 2 3 30 30 H 1.09000 * 109.47019 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47567 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.46984 * 299.99976 * 3 2 1 33 33 H 1.09000 * 109.47345 * 60.00064 * 3 2 1 34 34 H 1.09000 * 109.46904 * 299.99900 * 4 2 1 35 35 H 1.09006 * 109.46813 * 59.99711 * 4 2 1 36 36 H 1.08996 * 109.47458 * 179.97438 * 4 2 1 37 37 H 0.97001 * 119.99760 * 0.02562 * 8 6 5 38 38 H 1.09005 * 109.46532 * 60.00531 * 9 8 6 39 39 H 1.08994 * 109.47040 * 300.00377 * 9 8 6 40 40 H 1.09003 * 113.61064 * 25.40886 * 12 10 9 41 41 H 1.08995 * 113.66661 * 254.45894 * 12 10 9 42 42 H 1.09001 * 109.46767 * 159.13913 * 15 13 12 43 43 H 1.09005 * 109.46846 * 39.14385 * 15 13 12 44 44 H 0.96999 * 120.00076 * 359.97438 * 16 15 13 45 45 H 1.08002 * 119.55368 * 179.71360 * 19 18 17 46 46 H 1.08992 * 109.46853 * 125.00249 * 21 20 19 47 47 H 0.96698 * 114.00151 * 59.99697 * 22 21 20 48 48 H 1.48496 * 109.99803 * 58.68152 * 23 21 20 49 49 H 1.48500 * 109.99993 * 179.97438 * 23 21 20 50 50 H 1.07997 * 120.76398 * 179.97438 * 24 20 19 51 51 H 1.08999 * 113.61194 * 139.93772 * 27 13 12 52 52 H 1.09002 * 113.61257 * 270.75623 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0140 -0.6845 1.1855 6 6 1.6522 -1.9723 1.3383 7 8 0.9516 -2.5096 0.5036 8 7 2.0681 -2.6657 2.4166 9 6 1.6740 -4.0669 2.5832 10 6 2.2743 -4.6148 3.8794 11 1 3.3152 -4.3237 4.0199 12 6 1.3936 -4.3731 5.1189 13 6 1.7826 -5.7901 5.5722 14 9 2.9456 -5.8305 6.3488 15 6 0.6253 -6.5740 6.1944 16 7 0.4556 -6.1677 7.5916 17 6 -0.5422 -6.7481 8.3686 18 7 -1.3311 -7.6704 7.8413 19 6 -2.2932 -8.2417 8.5419 20 6 -2.5047 -7.9032 9.8628 21 6 -3.6031 -8.5677 10.6521 22 8 -4.5875 -7.5957 11.0100 23 14 -4.3934 -9.8997 9.6167 24 6 -1.6956 -6.9436 10.4576 25 6 -0.6981 -6.3575 9.6971 26 9 0.1117 -5.4193 10.2350 27 6 2.0210 -6.1171 4.0886 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6767 -1.7489 -1.2492 35 1 1.6766 -0.2073 -2.1392 36 1 3.1299 -0.7208 -1.2495 37 1 2.6277 -2.2368 3.0827 38 1 2.0397 -4.6500 1.7379 39 1 0.5872 -4.1356 2.6290 40 1 0.3341 -4.2643 4.8871 41 1 1.7674 -3.5868 5.7746 42 1 0.8439 -7.6409 6.1502 43 1 -0.2916 -6.3678 5.6420 44 1 1.0392 -5.4946 7.9753 45 1 -2.9204 -8.9875 8.0762 46 1 -3.1843 -9.0105 11.5557 47 1 -5.0033 -7.1600 10.2535 48 1 -3.3735 -10.9000 9.2113 49 1 -5.4779 -10.5632 10.3841 50 1 -1.8412 -6.6610 11.4897 51 1 2.9007 -6.7367 3.9140 52 1 1.1337 -6.4874 3.5751 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_27_16498592_17656566.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 13:16:02 Heat of formation + Delta-G solvation = -135.762808 kcal Electronic energy + Delta-G solvation = -35527.666817 eV Core-core repulsion = 30358.994828 eV Total energy + Delta-G solvation = -5168.671989 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 386.185 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -49.98776 -48.84555 -41.81925 -41.42319 -39.97289 -38.36865 -38.04235 -36.63595 -35.66959 -34.75073 -33.30885 -32.04179 -29.86285 -28.37282 -28.31136 -27.69365 -27.02676 -26.12286 -24.75129 -23.40809 -22.91470 -22.24343 -21.26011 -20.57265 -19.49967 -19.12151 -18.54993 -18.35517 -17.73930 -17.59870 -17.34186 -17.18643 -16.95362 -16.76809 -16.48008 -16.30199 -16.03551 -15.77160 -15.69251 -15.44072 -15.40509 -15.29228 -15.19401 -14.83446 -14.45889 -14.33865 -14.08772 -14.05363 -13.92361 -13.64459 -13.50719 -13.36226 -13.34719 -13.12030 -12.92102 -12.87478 -12.57302 -12.53988 -12.35892 -12.20122 -12.13842 -12.06985 -11.54362 -11.40782 -11.35933 -11.22546 -11.09463 -10.75986 -10.72716 -10.41939 -10.22191 -8.81913 -4.97135 -0.11187 0.07367 1.16431 1.32030 1.67493 1.74899 1.86543 2.01384 2.51509 2.97772 3.03426 3.10262 3.20542 3.22349 3.37883 3.47105 3.51847 3.56957 3.66731 3.73744 3.78931 3.84221 3.93843 3.98990 4.05652 4.23834 4.39182 4.42266 4.46929 4.50837 4.60692 4.60919 4.63337 4.66463 4.70466 4.73189 4.74948 4.75870 4.82881 4.86855 4.88930 4.92307 4.96616 5.01201 5.07412 5.21471 5.26492 5.30132 5.33418 5.40510 5.58341 5.86562 6.07964 6.37118 6.79658 6.88373 7.32438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.127 3.873 3 C -0.138 4.138 4 C -0.180 4.180 5 O -0.371 6.371 6 C 0.642 3.358 7 O -0.594 6.594 8 N -0.701 5.701 9 C 0.151 3.849 10 C -0.112 4.112 11 H 0.108 0.892 12 C -0.144 4.144 13 C 0.075 3.925 14 F -0.201 7.201 15 C 0.129 3.871 16 N -0.716 5.716 17 C 0.382 3.618 18 N -0.523 5.523 19 C 0.151 3.849 20 C -0.206 4.206 21 C -0.060 4.060 22 O -0.556 6.556 23 Si 0.776 3.224 24 C -0.041 4.041 25 C -0.038 4.038 26 F -0.142 7.142 27 C -0.130 4.130 28 H 0.061 0.939 29 H 0.086 0.914 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.098 0.902 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.086 0.914 36 H 0.061 0.939 37 H 0.416 0.584 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.114 0.886 41 H 0.084 0.916 42 H 0.073 0.927 43 H 0.101 0.899 44 H 0.415 0.585 45 H 0.188 0.812 46 H 0.110 0.890 47 H 0.396 0.604 48 H -0.281 1.281 49 H -0.298 1.298 50 H 0.153 0.847 51 H 0.091 0.909 52 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.269 1.322 -2.868 3.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.091 3.909 3 C -0.195 4.195 4 C -0.237 4.237 5 O -0.286 6.286 6 C 0.395 3.605 7 O -0.485 6.485 8 N -0.361 5.361 9 C 0.029 3.971 10 C -0.131 4.131 11 H 0.126 0.874 12 C -0.182 4.182 13 C 0.056 3.944 14 F -0.182 7.182 15 C 0.005 3.995 16 N -0.349 5.349 17 C 0.144 3.856 18 N -0.241 5.241 19 C -0.006 4.006 20 C -0.211 4.211 21 C -0.170 4.170 22 O -0.364 6.364 23 Si 0.682 3.318 24 C -0.067 4.067 25 C -0.065 4.065 26 F -0.121 7.121 27 C -0.168 4.168 28 H 0.080 0.920 29 H 0.105 0.895 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.117 0.883 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.105 0.895 36 H 0.080 0.920 37 H 0.252 0.748 38 H 0.089 0.911 39 H 0.094 0.906 40 H 0.132 0.868 41 H 0.102 0.898 42 H 0.091 0.909 43 H 0.119 0.881 44 H 0.252 0.748 45 H 0.204 0.796 46 H 0.128 0.872 47 H 0.246 0.754 48 H -0.207 1.207 49 H -0.225 1.225 50 H 0.171 0.829 51 H 0.110 0.890 52 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.395 -0.155 -3.851 4.099 hybrid contribution 1.247 0.939 2.149 2.657 sum -0.147 0.784 -1.702 1.879 Atomic orbital electron populations 1.22468 0.93951 1.03751 1.03495 1.22347 0.94528 0.92539 0.81533 1.21893 1.02419 0.90977 1.04228 1.22473 1.01592 1.02295 0.97352 1.86311 1.71573 1.23426 1.47264 1.18361 0.78827 0.80776 0.82541 1.90908 1.42305 1.70995 1.44292 1.44747 1.55275 1.12958 1.23119 1.21377 1.00113 0.78137 0.97479 1.22734 1.00802 0.96496 0.93040 0.87425 1.23803 1.02249 0.95024 0.97082 1.22224 0.81742 0.99264 0.91177 1.92859 1.50994 1.97390 1.76945 1.21812 0.97705 0.99240 0.80719 1.44422 1.34098 1.44606 1.11766 1.18516 0.89699 0.90727 0.86669 1.67336 1.07868 1.10836 1.38051 1.22718 0.92348 0.95583 0.89983 1.21009 1.01921 1.01933 0.96266 1.25012 0.89247 0.98786 1.03980 1.86483 1.54688 1.57063 1.38171 0.93854 0.78283 0.76145 0.83556 1.21444 0.90931 0.93400 1.00918 1.18164 0.97881 0.97680 0.92737 1.91468 1.71639 1.62918 1.86092 1.23538 1.05496 0.96019 0.91762 0.91966 0.89500 0.91661 0.91255 0.88331 0.91211 0.91690 0.89488 0.92020 0.74773 0.91080 0.90618 0.86781 0.89774 0.90863 0.88126 0.74775 0.79599 0.87237 0.75376 1.20741 1.22536 0.82906 0.89043 0.85591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.46 8.37 71.98 0.60 0.14 16 2 C 0.13 0.31 1.13 -10.80 -0.01 0.30 16 3 C -0.14 0.32 8.85 71.98 0.64 0.96 16 4 C -0.18 -0.49 8.37 71.98 0.60 0.11 16 5 O -0.37 -1.81 9.94 -55.53 -0.55 -2.36 16 6 C 0.64 3.55 8.06 129.79 1.05 4.60 16 7 O -0.59 -6.37 11.88 19.82 0.24 -6.13 16 8 N -0.70 0.96 5.56 -590.87 -3.29 -2.32 16 9 C 0.15 -0.67 5.51 86.38 0.48 -0.19 16 10 C -0.11 0.87 3.73 -10.21 -0.04 0.83 16 11 H 0.11 -0.80 8.14 -2.39 -0.02 -0.82 16 12 C -0.14 1.07 7.09 31.18 0.22 1.29 16 13 C 0.07 -0.37 1.64 -10.27 -0.02 -0.39 16 14 F -0.20 -0.22 16.86 44.97 0.76 0.54 16 15 C 0.13 -0.47 5.37 86.38 0.46 0.00 16 16 N -0.72 -0.09 5.63 -344.80 -1.94 -2.03 16 17 C 0.38 1.12 7.49 133.09 1.00 2.12 16 18 N -0.52 -0.94 9.57 -193.03 -1.85 -2.79 16 19 C 0.15 -0.28 9.84 84.61 0.83 0.56 16 20 C -0.21 0.28 5.36 -19.76 -0.11 0.17 16 21 C -0.06 0.18 2.82 71.24 0.20 0.38 16 22 O -0.56 1.08 12.84 -148.98 -1.91 -0.84 16 23 Si 0.78 -3.79 29.83 68.60 2.05 -1.75 16 24 C -0.04 -0.06 9.82 22.48 0.22 0.16 16 25 C -0.04 -0.15 7.35 22.59 0.17 0.02 16 26 F -0.14 -0.84 16.65 44.97 0.75 -0.09 16 27 C -0.13 1.06 7.10 31.12 0.22 1.28 16 28 H 0.06 0.12 8.14 -2.39 -0.02 0.10 16 29 H 0.09 -0.07 8.14 -2.38 -0.02 -0.09 16 30 H 0.06 0.49 5.88 -2.39 -0.01 0.48 16 31 H 0.07 -0.17 8.14 -2.38 -0.02 -0.19 16 32 H 0.10 -0.55 8.14 -2.39 -0.02 -0.57 16 33 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 34 H 0.06 0.51 5.88 -2.39 -0.01 0.50 16 35 H 0.09 -0.06 8.14 -2.38 -0.02 -0.08 16 36 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 37 H 0.42 -2.17 8.58 -92.71 -0.80 -2.96 16 38 H 0.07 -0.20 8.14 -2.38 -0.02 -0.22 16 39 H 0.08 -0.29 7.85 -2.39 -0.02 -0.31 16 40 H 0.11 -0.99 7.75 -2.39 -0.02 -1.01 16 41 H 0.08 -0.55 8.14 -2.39 -0.02 -0.57 16 42 H 0.07 -0.15 8.14 -2.39 -0.02 -0.16 16 43 H 0.10 -0.58 7.98 -2.38 -0.02 -0.60 16 44 H 0.41 0.01 7.70 -92.71 -0.71 -0.71 16 45 H 0.19 -1.42 4.90 -2.91 -0.01 -1.43 16 46 H 0.11 -0.21 7.96 -2.39 -0.02 -0.22 16 47 H 0.40 -3.97 8.70 -74.06 -0.64 -4.62 16 48 H -0.28 0.08 7.11 99.48 0.71 0.78 16 49 H -0.30 -0.90 7.11 99.48 0.71 -0.20 16 50 H 0.15 0.00 8.06 -2.91 -0.02 -0.02 16 51 H 0.09 -0.68 8.14 -2.39 -0.02 -0.70 16 52 H 0.13 -1.42 8.06 -2.39 -0.02 -1.44 16 Total: 0.00 -20.21 427.87 -0.37 -20.57 By element: Atomic # 1 Polarization: -14.00 SS G_CDS: -1.13 Total: -15.13 kcal Atomic # 6 Polarization: 5.81 SS G_CDS: 6.51 Total: 12.33 kcal Atomic # 7 Polarization: -0.07 SS G_CDS: -7.07 Total: -7.14 kcal Atomic # 8 Polarization: -7.10 SS G_CDS: -2.23 Total: -9.33 kcal Atomic # 9 Polarization: -1.05 SS G_CDS: 1.51 Total: 0.46 kcal Atomic # 14 Polarization: -3.79 SS G_CDS: 2.05 Total: -1.75 kcal Total: -20.21 -0.37 -20.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_27_16498592_17656566.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.188 kcal (2) G-P(sol) polarization free energy of solvation -20.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds