Wall clock time and date at job start Thu Mar 4 2021 13:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53006 * 109.47238 * 2 1 4 4 C 1.52989 * 109.47145 * 240.00008 * 2 1 3 5 5 O 1.45195 * 109.47167 * 119.99856 * 2 1 3 6 6 C 1.34638 * 117.00012 * 60.00109 * 5 2 1 7 7 O 1.21507 * 119.99923 * 359.97438 * 6 5 2 8 8 N 1.34775 * 120.00216 * 180.02562 * 6 5 2 9 9 C 1.46495 * 120.00286 * 180.02562 * 8 6 5 10 10 H 1.09007 * 112.84696 * 336.18819 * 9 8 6 11 11 C 1.53786 * 113.69451 * 107.45618 * 9 8 6 12 12 C 1.53784 * 87.07935 * 139.99421 * 11 9 8 13 13 F 1.39901 * 113.69071 * 89.12900 * 12 11 9 14 14 C 1.52998 * 113.61203 * 220.01715 * 12 11 9 15 15 N 1.46493 * 109.47626 * 277.49841 * 14 12 11 16 16 C 1.38609 * 120.00218 * 180.02562 * 15 14 12 17 17 N 1.29683 * 124.94818 * 0.02562 * 16 15 14 18 18 C 1.32124 * 116.86353 * 179.97438 * 17 16 15 19 19 C 1.33323 * 114.58053 * 0.02562 * 18 17 16 20 20 C 1.50703 * 125.94829 * 180.02562 * 19 18 17 21 21 O 1.42894 * 109.47608 * 299.99719 * 20 19 18 22 22 Si 1.86308 * 109.46832 * 179.97438 * 20 19 18 23 23 S 1.70968 * 124.94860 * 180.02562 * 16 15 14 24 24 C 1.53781 * 87.08425 * 334.56913 * 12 11 9 25 25 H 1.09000 * 109.46611 * 300.00077 * 1 2 3 26 26 H 1.08998 * 109.46788 * 59.99517 * 1 2 3 27 27 H 1.08993 * 109.47047 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47336 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.47043 * 300.00401 * 3 2 1 30 30 H 1.09000 * 109.46885 * 59.99811 * 3 2 1 31 31 H 1.09000 * 109.47615 * 299.99796 * 4 2 1 32 32 H 1.09004 * 109.47476 * 60.00168 * 4 2 1 33 33 H 1.09000 * 109.47553 * 180.02562 * 4 2 1 34 34 H 0.97005 * 120.00081 * 359.97438 * 8 6 5 35 35 H 1.08994 * 113.61408 * 25.44387 * 11 9 8 36 36 H 1.08998 * 113.61438 * 254.53965 * 11 9 8 37 37 H 1.09000 * 109.46798 * 157.49563 * 14 12 11 38 38 H 1.08998 * 109.47132 * 37.50177 * 14 12 11 39 39 H 0.96999 * 119.99712 * 0.02562 * 15 14 12 40 40 H 1.08002 * 122.70395 * 179.97438 * 18 17 16 41 41 H 1.09003 * 109.46961 * 60.00328 * 20 19 18 42 42 H 0.96704 * 113.99644 * 300.00758 * 21 20 19 43 43 H 1.48498 * 109.99989 * 58.68031 * 22 20 19 44 44 H 1.48499 * 109.99845 * 180.02562 * 22 20 19 45 45 H 1.08994 * 113.61350 * 139.98158 * 24 12 11 46 46 H 1.09002 * 113.61538 * 270.80657 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2491 5 8 2.0140 -0.6844 1.1855 6 6 1.6523 -1.9723 1.3383 7 8 0.9510 -2.5094 0.5041 8 7 2.0673 -2.6654 2.4171 9 6 1.6741 -4.0668 2.5831 10 1 0.7601 -4.3166 2.0443 11 6 2.8214 -5.0628 2.3450 12 6 2.2719 -5.8604 3.5396 13 9 1.3085 -6.8110 3.1854 14 6 3.3619 -6.4298 4.4498 15 7 3.8653 -7.6836 3.8836 16 6 4.8643 -8.3875 4.5375 17 7 5.4199 -8.0263 5.6522 18 6 6.3588 -8.8200 6.1360 19 6 6.6075 -9.9005 5.3955 20 6 7.6214 -10.9714 5.7056 21 8 8.9246 -10.3890 5.7715 22 14 7.5862 -12.2663 4.3665 23 16 5.5436 -9.8586 3.9920 24 6 1.6743 -4.5375 4.0472 25 1 -0.3632 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1301 1.4426 -0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6768 -1.7489 -1.2492 32 1 1.6767 -0.2074 -2.1392 33 1 3.1300 -0.7216 -1.2490 34 1 2.6269 -2.2365 3.0834 35 1 3.8104 -4.6397 2.5204 36 1 2.7491 -5.5933 1.3956 37 1 2.9464 -6.6191 5.4396 38 1 4.1793 -5.7132 4.5299 39 1 3.4995 -8.0211 3.0510 40 1 6.8831 -8.6101 7.0566 41 1 7.3808 -11.4331 6.6633 42 1 9.2051 -9.9591 4.9519 43 1 7.8808 -11.6442 3.0507 44 1 8.5813 -13.3285 4.6609 45 1 0.6761 -4.6438 4.4718 46 1 2.3493 -3.9713 4.6891 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_27_16499082_15704118.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 13:16:13 Heat of formation + Delta-G solvation = -78.407446 kcal Electronic energy + Delta-G solvation = -29602.695907 eV Core-core repulsion = 25150.654874 eV Total energy + Delta-G solvation = -4452.041033 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 360.135 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -48.91578 -41.90209 -40.77027 -39.97491 -38.22519 -37.88299 -36.59442 -35.35466 -34.04906 -31.57147 -29.28068 -28.39455 -28.32403 -27.14710 -26.42641 -25.08764 -24.14156 -22.65615 -21.48945 -20.85605 -20.77972 -19.87989 -19.22151 -18.30428 -17.97735 -17.35907 -17.26639 -17.14060 -16.68462 -16.55763 -16.32423 -16.05664 -15.75954 -15.67901 -15.46328 -15.35535 -15.27919 -14.92599 -14.58299 -14.48454 -14.03181 -13.93547 -13.65566 -13.36986 -13.29349 -12.99150 -12.95881 -12.92944 -12.89108 -12.81077 -12.47592 -12.46659 -12.32860 -12.06657 -11.72265 -11.61257 -11.42552 -11.23223 -11.15572 -10.93476 -10.32758 -10.26986 -10.22727 -8.77648 -5.03634 -0.07491 0.00244 0.66512 1.10242 1.25502 1.54319 1.67654 1.88196 1.95255 2.05772 2.93512 3.02567 3.04985 3.25867 3.38989 3.50317 3.52282 3.71113 3.71667 3.77204 3.91909 3.92026 4.18859 4.31931 4.49108 4.53424 4.56993 4.58730 4.58792 4.59219 4.70235 4.70858 4.74173 4.78427 4.82953 4.85414 4.85519 4.98432 5.04704 5.13646 5.24489 5.26518 5.36258 5.55064 5.72359 6.02661 6.34045 6.44243 6.94788 7.29133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.128 3.872 3 C -0.138 4.138 4 C -0.180 4.180 5 O -0.368 6.368 6 C 0.644 3.356 7 O -0.594 6.594 8 N -0.686 5.686 9 C 0.139 3.861 10 H 0.104 0.896 11 C -0.161 4.161 12 C 0.087 3.913 13 F -0.195 7.195 14 C 0.136 3.864 15 N -0.688 5.688 16 C 0.315 3.685 17 N -0.572 5.572 18 C 0.105 3.895 19 C -0.305 4.305 20 C -0.020 4.020 21 O -0.541 6.541 22 Si 0.719 3.281 23 S 0.111 5.889 24 C -0.141 4.141 25 H 0.062 0.938 26 H 0.086 0.914 27 H 0.063 0.937 28 H 0.070 0.930 29 H 0.097 0.903 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.086 0.914 33 H 0.062 0.938 34 H 0.421 0.579 35 H 0.123 0.877 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.099 0.901 39 H 0.423 0.577 40 H 0.182 0.818 41 H 0.136 0.864 42 H 0.386 0.614 43 H -0.268 1.268 44 H -0.274 1.274 45 H 0.099 0.901 46 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.266 2.387 0.348 2.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.091 3.909 3 C -0.195 4.195 4 C -0.237 4.237 5 O -0.282 6.282 6 C 0.397 3.603 7 O -0.485 6.485 8 N -0.346 5.346 9 C 0.034 3.966 10 H 0.122 0.878 11 C -0.200 4.200 12 C 0.068 3.932 13 F -0.176 7.176 14 C 0.010 3.990 15 N -0.329 5.329 16 C -0.055 4.055 17 N -0.299 5.299 18 C -0.046 4.046 19 C -0.428 4.428 20 C -0.133 4.133 21 O -0.350 6.350 22 Si 0.622 3.378 23 S 0.360 5.640 24 C -0.179 4.179 25 H 0.081 0.919 26 H 0.105 0.895 27 H 0.082 0.918 28 H 0.089 0.911 29 H 0.116 0.884 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.105 0.895 33 H 0.081 0.919 34 H 0.259 0.741 35 H 0.141 0.859 36 H 0.100 0.900 37 H 0.096 0.904 38 H 0.117 0.883 39 H 0.262 0.738 40 H 0.198 0.802 41 H 0.154 0.846 42 H 0.236 0.764 43 H -0.193 1.193 44 H -0.200 1.200 45 H 0.117 0.883 46 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -0.637 1.568 -0.698 1.830 hybrid contribution 1.007 0.891 0.344 1.388 sum 0.370 2.458 -0.354 2.511 Atomic orbital electron populations 1.22478 0.94062 1.03681 1.03547 1.22349 0.94434 0.92589 0.81499 1.21893 1.02474 0.90858 1.04263 1.22471 1.01650 1.02232 0.97377 1.86314 1.71466 1.23221 1.47229 1.18421 0.78510 0.80754 0.82596 1.90917 1.42202 1.71063 1.44289 1.44599 1.54957 1.11836 1.23176 1.22449 0.98578 0.77757 0.97787 0.87798 1.24221 1.00802 0.96541 0.98483 1.21833 0.87308 0.86849 0.97223 1.92885 1.65285 1.66388 1.93016 1.21795 0.95390 0.85400 0.96435 1.43867 1.37901 1.24364 1.26737 1.23854 0.94078 0.94547 0.93050 1.66485 1.15761 1.35223 1.12436 1.21468 0.93242 0.89452 1.00397 1.25634 1.10199 1.06150 1.00772 1.24225 0.80155 0.97623 1.11255 1.86590 1.31708 1.75492 1.41163 0.94406 0.90153 0.78071 0.75198 1.83964 1.34343 1.20239 1.25428 1.23985 1.04837 0.93035 0.96078 0.91864 0.89529 0.91808 0.91144 0.88391 0.91114 0.91801 0.89540 0.91900 0.74104 0.85918 0.90004 0.90382 0.88282 0.73845 0.80152 0.84617 0.76437 1.19326 1.20002 0.88251 0.84395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.46 8.37 71.98 0.60 0.14 16 2 C 0.13 0.26 1.13 -10.79 -0.01 0.25 16 3 C -0.14 0.40 8.85 71.98 0.64 1.03 16 4 C -0.18 -0.45 8.37 71.98 0.60 0.16 16 5 O -0.37 -1.45 9.94 -55.47 -0.55 -2.00 16 6 C 0.64 3.16 8.06 129.79 1.05 4.20 16 7 O -0.59 -6.43 11.48 19.82 0.23 -6.20 16 8 N -0.69 1.73 5.36 -567.60 -3.04 -1.32 16 9 C 0.14 -0.48 4.22 45.52 0.19 -0.29 16 10 H 0.10 0.19 7.46 -2.38 -0.02 0.17 16 11 C -0.16 0.91 7.33 31.12 0.23 1.14 16 12 C 0.09 -0.49 1.67 -10.27 -0.02 -0.51 16 13 F -0.20 -0.01 16.80 44.97 0.76 0.75 16 14 C 0.14 -0.66 5.64 86.38 0.49 -0.18 16 15 N -0.69 1.55 5.62 -351.03 -1.97 -0.42 16 16 C 0.32 0.52 8.09 179.32 1.45 1.97 16 17 N -0.57 -2.62 10.14 -202.03 -2.05 -4.67 16 18 C 0.11 0.31 11.22 83.54 0.94 1.25 16 19 C -0.30 -0.23 5.74 24.57 0.14 -0.09 16 20 C -0.02 0.02 2.99 71.24 0.21 0.23 16 21 O -0.54 -0.92 12.87 -148.98 -1.92 -2.84 16 22 Si 0.72 -0.92 31.06 68.60 2.13 1.21 16 23 S 0.11 -0.05 20.57 -56.49 -1.16 -1.21 16 24 C -0.14 1.17 7.29 31.12 0.23 1.40 16 25 H 0.06 0.11 8.14 -2.39 -0.02 0.09 16 26 H 0.09 -0.06 8.14 -2.39 -0.02 -0.08 16 27 H 0.06 0.50 5.88 -2.39 -0.01 0.49 16 28 H 0.07 -0.22 8.14 -2.39 -0.02 -0.24 16 29 H 0.10 -0.58 8.14 -2.39 -0.02 -0.60 16 30 H 0.07 -0.22 8.14 -2.39 -0.02 -0.24 16 31 H 0.06 0.50 5.88 -2.39 -0.01 0.48 16 32 H 0.09 -0.06 8.14 -2.38 -0.02 -0.08 16 33 H 0.06 0.11 8.14 -2.39 -0.02 0.09 16 34 H 0.42 -3.32 8.84 -92.70 -0.82 -4.14 16 35 H 0.12 -1.02 7.96 -2.39 -0.02 -1.04 16 36 H 0.08 -0.26 8.14 -2.39 -0.02 -0.28 16 37 H 0.08 -0.25 8.14 -2.39 -0.02 -0.27 16 38 H 0.10 -0.63 7.94 -2.39 -0.02 -0.65 16 39 H 0.42 -1.85 8.31 -92.71 -0.77 -2.62 16 40 H 0.18 0.15 8.06 -2.91 -0.02 0.13 16 41 H 0.14 -0.42 7.96 -2.39 -0.02 -0.43 16 42 H 0.39 -1.32 8.70 -74.05 -0.64 -1.96 16 43 H -0.27 -0.71 7.11 99.48 0.71 0.00 16 44 H -0.27 -1.34 7.11 99.48 0.71 -0.63 16 45 H 0.10 -0.76 8.14 -2.39 -0.02 -0.78 16 46 H 0.14 -1.84 8.08 -2.39 -0.02 -1.86 16 Total: 0.00 -18.46 393.51 -2.01 -20.47 By element: Atomic # 1 Polarization: -13.31 SS G_CDS: -1.16 Total: -14.47 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: 6.73 Total: 10.70 kcal Atomic # 7 Polarization: 0.65 SS G_CDS: -7.07 Total: -6.41 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: -2.24 Total: -11.05 kcal Atomic # 9 Polarization: -0.01 SS G_CDS: 0.76 Total: 0.75 kcal Atomic # 14 Polarization: -0.92 SS G_CDS: 2.13 Total: 1.21 kcal Atomic # 16 Polarization: -0.05 SS G_CDS: -1.16 Total: -1.21 kcal Total: -18.46 -2.01 -20.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_27_16499082_15704118.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.933 kcal (2) G-P(sol) polarization free energy of solvation -18.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds