Wall clock time and date at job start Thu Mar 4 2021 13:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47306 * 2 1 4 4 C 1.53005 * 109.46668 * 240.00185 * 2 1 3 5 5 O 1.45201 * 109.47356 * 120.00695 * 2 1 3 6 6 C 1.34635 * 117.00218 * 59.99313 * 5 2 1 7 7 O 1.21514 * 119.99998 * 0.02562 * 6 5 2 8 8 N 1.34778 * 120.00039 * 179.97438 * 6 5 2 9 9 C 1.46500 * 119.99695 * 180.02562 * 8 6 5 10 10 H 1.08997 * 112.85121 * 336.19205 * 9 8 6 11 11 C 1.53782 * 113.61521 * 107.50744 * 9 8 6 12 12 C 1.53784 * 87.07947 * 139.97707 * 11 9 8 13 13 F 1.39902 * 113.69123 * 89.12631 * 12 11 9 14 14 C 1.52999 * 113.61296 * 220.01541 * 12 11 9 15 15 N 1.46501 * 109.47482 * 277.50075 * 14 12 11 16 16 C 1.39134 * 120.00430 * 179.97438 * 15 14 12 17 17 N 1.32344 * 119.71833 * 0.02562 * 16 15 14 18 18 C 1.32004 * 121.64770 * 179.72079 * 17 16 15 19 19 C 1.37986 * 120.90365 * 0.02562 * 18 17 16 20 20 C 1.50698 * 120.32632 * 179.97438 * 19 18 17 21 21 O 1.42906 * 109.46849 * 244.99532 * 20 19 18 22 22 Si 1.86300 * 109.47324 * 4.99524 * 20 19 18 23 23 C 1.38908 * 119.34591 * 359.97438 * 19 18 17 24 24 C 1.38445 * 118.48365 * 0.02562 * 23 19 18 25 25 F 1.35098 * 120.47108 * 179.97438 * 24 23 19 26 26 C 1.53782 * 87.08383 * 334.56493 * 12 11 9 27 27 H 1.08994 * 109.46761 * 299.99469 * 1 2 3 28 28 H 1.09000 * 109.47357 * 59.99519 * 1 2 3 29 29 H 1.09000 * 109.47302 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47319 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47305 * 300.00513 * 3 2 1 32 32 H 1.09010 * 109.46622 * 60.00374 * 3 2 1 33 33 H 1.08993 * 109.47457 * 299.99840 * 4 2 1 34 34 H 1.09005 * 109.47137 * 60.00549 * 4 2 1 35 35 H 1.09003 * 109.46456 * 179.97438 * 4 2 1 36 36 H 0.96991 * 119.99888 * 0.02562 * 8 6 5 37 37 H 1.08993 * 113.61516 * 25.43003 * 11 9 8 38 38 H 1.09000 * 113.60787 * 254.52599 * 11 9 8 39 39 H 1.08997 * 109.47546 * 157.49794 * 14 12 11 40 40 H 1.09006 * 109.47216 * 37.49925 * 14 12 11 41 41 H 0.97008 * 119.99346 * 0.02562 * 15 14 12 42 42 H 1.08000 * 119.54737 * 180.02562 * 18 17 16 43 43 H 1.08999 * 109.47118 * 124.99624 * 20 19 18 44 44 H 0.96700 * 113.99653 * 59.99872 * 21 20 19 45 45 H 1.48501 * 109.99966 * 180.02562 * 22 20 19 46 46 H 1.48500 * 109.99731 * 301.32197 * 22 20 19 47 47 H 1.07994 * 120.75629 * 180.02562 * 23 19 18 48 48 H 1.09002 * 113.61502 * 139.98174 * 26 12 11 49 49 H 1.08994 * 113.61380 * 270.80121 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 8 2.0141 -0.6846 1.1855 6 6 1.6522 -1.9724 1.3382 7 8 0.9515 -2.5097 0.5035 8 7 2.0681 -2.6659 2.4165 9 6 1.6748 -4.0674 2.5823 10 1 0.7604 -4.3169 2.0442 11 6 2.8233 -5.0619 2.3436 12 6 2.2752 -5.8604 3.5381 13 9 1.3129 -6.8122 3.1840 14 6 3.3662 -6.4287 4.4478 15 7 3.8711 -7.6817 3.8810 16 6 4.8757 -8.3868 4.5363 17 7 5.3709 -7.9207 5.6716 18 6 6.3206 -8.5611 6.3277 19 6 6.8354 -9.7486 5.8492 20 6 7.9198 -10.4687 6.6085 21 8 9.1167 -10.4860 5.8280 22 14 8.2409 -9.5874 8.2182 23 6 6.3441 -10.2738 4.6608 24 6 5.3482 -9.5804 3.9943 25 9 4.8417 -10.0543 2.8350 26 6 1.6762 -4.5383 4.0463 27 1 -0.3632 0.5137 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9562 0.8901 33 1 1.6766 -1.7488 -1.2494 34 1 1.6766 -0.2073 -2.1393 35 1 3.1299 -0.7208 -1.2495 36 1 2.6278 -2.2371 3.0825 37 1 3.8118 -4.6375 2.5187 38 1 2.7512 -5.5921 1.3939 39 1 2.9514 -6.6188 5.4377 40 1 4.1828 -5.7111 4.5278 41 1 3.5053 -8.0194 3.0484 42 1 6.6999 -8.1501 7.2516 43 1 7.6034 -11.4918 6.8113 44 1 9.4565 -9.6074 5.6094 45 1 9.3089 -10.2874 8.9762 46 1 8.6422 -8.1819 7.9564 47 1 6.7302 -11.2018 4.2657 48 1 0.6782 -4.6459 4.4713 49 1 2.3506 -3.9716 4.6881 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_27_16499082_17656566.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 13:16:19 Heat of formation + Delta-G solvation = -130.129239 kcal Electronic energy + Delta-G solvation = -33820.874735 eV Core-core repulsion = 28807.984655 eV Total energy + Delta-G solvation = -5012.890080 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 372.169 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -49.97922 -48.91285 -41.90752 -41.41572 -40.00272 -38.32711 -37.88549 -36.61964 -35.37219 -34.11842 -33.27526 -31.85317 -28.93572 -28.40099 -28.32594 -27.13796 -26.29013 -25.28699 -24.20395 -22.93617 -22.44612 -21.48191 -20.77894 -19.54456 -19.22762 -18.58185 -18.42595 -17.93281 -17.60864 -17.27730 -17.19566 -16.99723 -16.96684 -16.37834 -16.17967 -16.00045 -15.77214 -15.52551 -15.46902 -15.38283 -15.27435 -15.11876 -14.52932 -14.41002 -14.34067 -14.03557 -13.93572 -13.63151 -13.43644 -13.37146 -13.29084 -12.98656 -12.96120 -12.89405 -12.81656 -12.65566 -12.47944 -12.33333 -12.05807 -11.70837 -11.63848 -11.43034 -11.26973 -11.16239 -10.79948 -10.67855 -10.55132 -10.27421 -8.81885 -4.86755 -0.09985 0.08560 1.09453 1.32996 1.63870 1.66926 1.86247 2.01723 2.51949 2.94116 2.97277 3.02895 3.07156 3.25995 3.32640 3.44178 3.50885 3.57999 3.60966 3.71162 3.76681 3.84594 3.91506 3.99665 4.19648 4.33392 4.43511 4.49953 4.53099 4.54046 4.58180 4.58934 4.62748 4.70180 4.73628 4.73635 4.78609 4.83150 4.85115 4.85914 4.98414 5.00971 5.13195 5.23912 5.26141 5.31783 5.36043 5.54774 5.87001 6.07305 6.34153 6.51667 6.88170 7.28994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.128 3.872 3 C -0.138 4.138 4 C -0.180 4.180 5 O -0.367 6.367 6 C 0.643 3.357 7 O -0.595 6.595 8 N -0.685 5.685 9 C 0.139 3.861 10 H 0.101 0.899 11 C -0.163 4.163 12 C 0.083 3.917 13 F -0.199 7.199 14 C 0.134 3.866 15 N -0.717 5.717 16 C 0.383 3.617 17 N -0.521 5.521 18 C 0.148 3.852 19 C -0.202 4.202 20 C -0.070 4.070 21 O -0.550 6.550 22 Si 0.768 3.232 23 C -0.040 4.040 24 C -0.039 4.039 25 F -0.143 7.143 26 C -0.137 4.137 27 H 0.063 0.937 28 H 0.086 0.914 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.097 0.903 32 H 0.070 0.930 33 H 0.062 0.938 34 H 0.086 0.914 35 H 0.062 0.938 36 H 0.422 0.578 37 H 0.124 0.876 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.103 0.897 41 H 0.414 0.586 42 H 0.186 0.814 43 H 0.127 0.873 44 H 0.387 0.613 45 H -0.303 1.303 46 H -0.271 1.271 47 H 0.154 0.846 48 H 0.099 0.901 49 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.269 4.516 4.913 6.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.091 3.909 3 C -0.195 4.195 4 C -0.238 4.238 5 O -0.281 6.281 6 C 0.397 3.603 7 O -0.486 6.486 8 N -0.345 5.345 9 C 0.034 3.966 10 H 0.120 0.880 11 C -0.202 4.202 12 C 0.063 3.937 13 F -0.180 7.180 14 C 0.010 3.990 15 N -0.351 5.351 16 C 0.145 3.855 17 N -0.239 5.239 18 C -0.009 4.009 19 C -0.207 4.207 20 C -0.180 4.180 21 O -0.358 6.358 22 Si 0.673 3.327 23 C -0.066 4.066 24 C -0.066 4.066 25 F -0.122 7.122 26 C -0.176 4.176 27 H 0.082 0.918 28 H 0.105 0.895 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.116 0.884 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.105 0.895 35 H 0.081 0.919 36 H 0.260 0.740 37 H 0.142 0.858 38 H 0.093 0.907 39 H 0.102 0.898 40 H 0.121 0.879 41 H 0.251 0.749 42 H 0.202 0.798 43 H 0.145 0.855 44 H 0.236 0.764 45 H -0.231 1.231 46 H -0.198 1.198 47 H 0.171 0.829 48 H 0.118 0.882 49 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 0.941 5.065 5.331 7.414 hybrid contribution 0.712 -0.973 -2.062 2.389 sum 1.653 4.092 3.269 5.492 Atomic orbital electron populations 1.22477 0.94072 1.03647 1.03579 1.22351 0.94433 0.92614 0.81472 1.21891 1.02484 0.90786 1.04291 1.22476 1.01655 1.02196 0.97436 1.86312 1.71439 1.23173 1.47220 1.18435 0.78510 0.80771 0.82602 1.90921 1.42311 1.71087 1.44286 1.44585 1.54908 1.11747 1.23224 1.22442 0.98379 0.77743 0.98009 0.88048 1.24224 1.00925 0.96664 0.98403 1.21921 0.87535 0.86931 0.97291 1.92877 1.65494 1.66505 1.93082 1.21780 0.95320 0.85531 0.96403 1.44433 1.38541 1.25039 1.27064 1.18501 0.89298 0.87702 0.90003 1.67355 1.14964 1.34562 1.07003 1.22769 0.89912 0.90252 0.97941 1.20916 1.03170 0.98676 0.97944 1.25083 0.82991 1.07319 1.02557 1.86595 1.41295 1.34960 1.72924 0.94113 0.86861 0.75862 0.75912 1.21452 0.91940 0.99566 0.93646 1.18193 1.03122 0.97333 0.87917 1.91469 1.86516 1.88162 1.46076 1.23973 1.04889 0.92828 0.95874 0.91792 0.89523 0.91891 0.91123 0.88392 0.91049 0.91902 0.89536 0.91893 0.74009 0.85795 0.90661 0.89785 0.87863 0.74851 0.79763 0.85490 0.76392 1.23076 1.19752 0.82872 0.88233 0.83981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.52 8.37 71.98 0.60 0.08 16 2 C 0.13 0.30 1.13 -10.79 -0.01 0.29 16 3 C -0.14 0.38 8.85 71.98 0.64 1.02 16 4 C -0.18 -0.54 8.37 71.98 0.60 0.06 16 5 O -0.37 -1.54 9.94 -55.44 -0.55 -2.09 16 6 C 0.64 3.48 8.06 129.79 1.05 4.53 16 7 O -0.60 -6.94 11.48 19.80 0.23 -6.71 16 8 N -0.69 1.46 5.36 -567.59 -3.04 -1.58 16 9 C 0.14 -0.36 4.22 45.52 0.19 -0.17 16 10 H 0.10 0.31 7.46 -2.39 -0.02 0.29 16 11 C -0.16 0.67 7.33 31.12 0.23 0.89 16 12 C 0.08 -0.36 1.67 -10.27 -0.02 -0.38 16 13 F -0.20 -0.46 16.80 44.97 0.76 0.29 16 14 C 0.13 -0.62 5.39 86.38 0.47 -0.15 16 15 N -0.72 0.06 5.62 -344.81 -1.94 -1.88 16 16 C 0.38 0.93 7.49 133.09 1.00 1.93 16 17 N -0.52 -0.49 9.57 -193.04 -1.85 -2.33 16 18 C 0.15 -0.36 9.84 84.61 0.83 0.48 16 19 C -0.20 0.40 5.36 -19.76 -0.11 0.30 16 20 C -0.07 0.25 2.82 71.24 0.20 0.45 16 21 O -0.55 -0.01 12.84 -148.98 -1.91 -1.92 16 22 Si 0.77 -4.22 29.91 68.60 2.05 -2.17 16 23 C -0.04 -0.04 9.82 22.48 0.22 0.18 16 24 C -0.04 -0.14 7.35 22.59 0.17 0.02 16 25 F -0.14 -0.88 16.65 44.97 0.75 -0.13 16 26 C -0.14 1.11 7.29 31.12 0.23 1.34 16 27 H 0.06 0.12 8.14 -2.39 -0.02 0.10 16 28 H 0.09 -0.03 8.14 -2.39 -0.02 -0.05 16 29 H 0.06 0.53 5.88 -2.39 -0.01 0.51 16 30 H 0.07 -0.22 8.14 -2.39 -0.02 -0.24 16 31 H 0.10 -0.57 8.14 -2.39 -0.02 -0.59 16 32 H 0.07 -0.23 8.14 -2.38 -0.02 -0.24 16 33 H 0.06 0.54 5.88 -2.39 -0.01 0.52 16 34 H 0.09 -0.02 8.14 -2.38 -0.02 -0.04 16 35 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 36 H 0.42 -3.35 8.84 -92.71 -0.82 -4.17 16 37 H 0.12 -0.91 7.96 -2.39 -0.02 -0.92 16 38 H 0.07 -0.04 8.14 -2.39 -0.02 -0.06 16 39 H 0.08 -0.36 8.14 -2.39 -0.02 -0.38 16 40 H 0.10 -0.75 7.94 -2.38 -0.02 -0.77 16 41 H 0.41 0.24 7.66 -92.70 -0.71 -0.47 16 42 H 0.19 -1.39 4.84 -2.91 -0.01 -1.41 16 43 H 0.13 -0.65 7.96 -2.39 -0.02 -0.67 16 44 H 0.39 -2.19 8.70 -74.06 -0.64 -2.83 16 45 H -0.30 -0.88 7.11 99.48 0.71 -0.18 16 46 H -0.27 0.79 7.01 99.48 0.70 1.48 16 47 H 0.15 -0.07 8.06 -2.91 -0.02 -0.09 16 48 H 0.10 -0.75 8.14 -2.39 -0.02 -0.77 16 49 H 0.14 -1.98 8.08 -2.39 -0.02 -2.00 16 Total: 0.00 -20.15 406.30 -0.35 -20.50 By element: Atomic # 1 Polarization: -11.72 SS G_CDS: -1.12 Total: -12.84 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: 6.28 Total: 10.87 kcal Atomic # 7 Polarization: 1.03 SS G_CDS: -6.83 Total: -5.79 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: -2.24 Total: -10.72 kcal Atomic # 9 Polarization: -1.35 SS G_CDS: 1.50 Total: 0.16 kcal Atomic # 14 Polarization: -4.22 SS G_CDS: 2.05 Total: -2.17 kcal Total: -20.15 -0.35 -20.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_27_16499082_17656566.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.628 kcal (2) G-P(sol) polarization free energy of solvation -20.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds