Wall clock time and date at job start Thu Mar 4 2021 13:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46880 * 2 1 4 4 C 1.53001 * 109.47251 * 240.00593 * 2 1 3 5 5 O 1.45194 * 109.47109 * 120.00240 * 2 1 3 6 6 C 1.34634 * 117.00020 * 60.00143 * 5 2 1 7 7 O 1.21509 * 120.00063 * 359.97438 * 6 5 2 8 8 N 1.34778 * 120.00069 * 179.97438 * 6 5 2 9 9 C 1.46500 * 120.00321 * 179.97438 * 8 6 5 10 10 H 1.09007 * 112.84541 * 23.80534 * 9 8 6 11 11 C 1.53773 * 113.61715 * 155.00049 * 9 8 6 12 12 C 1.53783 * 87.08292 * 89.20138 * 11 9 8 13 13 H 1.08996 * 113.61645 * 270.80705 * 12 11 9 14 14 C 1.50695 * 113.61409 * 139.98115 * 12 11 9 15 15 N 1.30261 * 126.18062 * 299.97600 * 14 12 11 16 16 N 1.28656 * 109.56778 * 180.02562 * 15 14 12 17 17 C 1.31331 * 109.25652 * 0.02562 * 16 15 14 18 18 C 1.47693 * 126.39749 * 179.97438 * 17 16 15 19 19 C 1.34691 * 122.88906 * 180.02562 * 18 17 16 20 20 S 1.70635 * 110.50434 * 179.73124 * 19 18 17 21 21 C 1.75727 * 91.72374 * 0.26995 * 20 19 18 22 22 C 1.50697 * 125.09557 * 180.02562 * 21 20 19 23 23 O 1.42897 * 109.47451 * 119.97409 * 22 21 20 24 24 Si 1.86304 * 109.46884 * 359.97149 * 22 21 20 25 25 C 1.33093 * 109.81021 * 359.97438 * 21 20 19 26 26 O 1.34568 * 126.18014 * 120.26726 * 14 12 11 27 27 C 1.53780 * 113.69274 * 252.53963 * 9 8 6 28 28 H 1.08996 * 109.47274 * 299.99841 * 1 2 3 29 29 H 1.09003 * 109.47228 * 59.99652 * 1 2 3 30 30 H 1.08999 * 109.47068 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47182 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.47474 * 300.00198 * 3 2 1 33 33 H 1.09003 * 109.47001 * 60.00407 * 3 2 1 34 34 H 1.09008 * 109.46968 * 299.99944 * 4 2 1 35 35 H 1.08999 * 109.47377 * 59.99281 * 4 2 1 36 36 H 1.08991 * 109.47008 * 180.02562 * 4 2 1 37 37 H 0.97004 * 120.00096 * 0.02562 * 8 6 5 38 38 H 1.09003 * 113.61705 * 334.65697 * 11 9 8 39 39 H 1.09002 * 113.61858 * 203.75287 * 11 9 8 40 40 H 1.08002 * 124.75182 * 0.02562 * 19 18 17 41 41 H 1.09004 * 109.47030 * 239.97581 * 22 21 20 42 42 H 0.96701 * 114.00113 * 300.00281 * 23 22 21 43 43 H 1.48501 * 109.99951 * 179.97438 * 24 22 21 44 44 H 1.48496 * 110.00106 * 301.32149 * 24 22 21 45 45 H 1.08005 * 123.13005 * 180.02562 * 25 21 20 46 46 H 1.08998 * 113.61438 * 156.32359 * 27 9 8 47 47 H 1.09004 * 113.61623 * 25.42157 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6522 -1.9723 1.3382 7 8 0.9509 -2.5094 0.5039 8 7 2.0681 -2.6658 2.4165 9 6 1.6740 -4.0669 2.5830 10 1 1.4209 -4.5504 1.6393 11 6 2.6475 -4.8817 3.4508 12 6 1.8063 -4.4478 4.6629 13 1 2.1357 -3.5098 5.1098 14 6 1.6041 -5.5413 5.6799 15 7 1.0259 -6.6895 5.4698 16 7 1.0262 -7.3775 6.5570 17 6 1.6099 -6.6846 7.5078 18 6 1.8147 -7.1145 8.9059 19 6 2.4246 -6.3432 9.8263 20 16 2.4845 -7.1438 11.3320 21 6 1.6675 -8.5539 10.6747 22 6 1.3247 -9.7979 11.4531 23 8 -0.0902 -9.9970 11.4342 24 14 1.9016 -9.6070 13.2143 25 6 1.3958 -8.3581 9.3866 26 8 1.9833 -5.5059 6.9706 27 6 0.6277 -4.2875 3.6882 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4426 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6767 -1.7489 -1.2494 35 1 1.6766 -0.2073 -2.1393 36 1 3.1299 -0.7215 -1.2490 37 1 2.6277 -2.2369 3.0827 38 1 3.6625 -4.4844 3.4591 39 1 2.6131 -5.9537 3.2567 40 1 2.8164 -5.3544 9.6390 41 1 1.8187 -10.6576 11.0002 42 1 -0.5950 -9.2693 11.8225 43 1 1.5689 -10.8271 13.9928 44 1 3.3668 -9.3677 13.2457 45 1 0.8945 -9.0905 8.7711 46 1 0.0412 -5.1970 3.5590 47 1 0.0121 -3.4104 3.8880 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_271722_14937844_10193906.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 13:38:32 Heat of formation + Delta-G solvation = -9.129922 kcal Electronic energy + Delta-G solvation = -31288.617321 eV Core-core repulsion = 26761.211369 eV Total energy + Delta-G solvation = -4527.405953 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 380.128 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -45.31928 -41.97430 -40.51671 -39.69974 -37.95787 -37.63017 -37.34777 -35.41202 -34.29585 -32.74963 -31.24601 -28.36612 -28.30073 -27.85827 -27.06494 -26.94013 -25.73024 -24.38314 -23.25138 -22.98444 -21.22557 -20.98630 -20.44192 -19.42190 -18.93304 -18.53138 -18.37828 -17.74700 -17.58588 -17.23280 -17.01500 -16.59367 -16.46133 -16.25862 -15.59626 -15.39787 -15.33679 -15.12879 -14.57892 -14.46023 -14.37306 -14.14835 -14.01150 -13.87240 -13.69391 -13.59947 -13.38270 -13.16200 -13.10146 -13.03055 -12.92188 -12.86581 -12.65180 -12.55367 -12.33290 -12.30516 -12.15267 -12.06562 -11.80448 -11.71673 -11.39950 -11.13756 -11.10853 -10.59579 -10.29555 -10.00274 -9.39299 -5.11836 -0.69935 0.07711 0.26769 0.58318 0.94467 0.98816 1.07468 1.24394 1.59208 1.70440 1.73373 1.92342 2.63363 3.04097 3.12474 3.29883 3.34504 3.43781 3.58896 3.65752 3.71230 3.74076 3.79827 3.91752 3.94428 3.98601 4.17112 4.29958 4.36554 4.41597 4.45622 4.50140 4.61491 4.61972 4.63359 4.72842 4.77006 4.80102 4.82355 4.84415 4.86841 4.88151 4.92367 4.94752 5.07997 5.14216 5.27514 5.29597 5.39645 5.58138 6.34928 6.69933 7.09701 7.31260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.128 3.872 3 C -0.138 4.138 4 C -0.181 4.181 5 O -0.366 6.366 6 C 0.647 3.353 7 O -0.591 6.591 8 N -0.682 5.682 9 C 0.145 3.855 10 H 0.106 0.894 11 C -0.115 4.115 12 C -0.020 4.020 13 H 0.152 0.848 14 C 0.183 3.817 15 N -0.307 5.307 16 N -0.310 5.310 17 C 0.230 3.770 18 C -0.071 4.071 19 C -0.202 4.202 20 S 0.283 5.717 21 C -0.241 4.241 22 C -0.035 4.035 23 O -0.551 6.551 24 Si 0.736 3.264 25 C -0.080 4.080 26 O -0.221 6.221 27 C -0.131 4.131 28 H 0.063 0.937 29 H 0.085 0.915 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.097 0.903 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.085 0.915 36 H 0.063 0.937 37 H 0.421 0.579 38 H 0.111 0.889 39 H 0.104 0.896 40 H 0.195 0.805 41 H 0.119 0.881 42 H 0.397 0.603 43 H -0.272 1.272 44 H -0.252 1.252 45 H 0.142 0.858 46 H 0.099 0.901 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.865 7.224 5.706 9.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.092 3.908 3 C -0.195 4.195 4 C -0.238 4.238 5 O -0.281 6.281 6 C 0.401 3.599 7 O -0.481 6.481 8 N -0.342 5.342 9 C 0.040 3.960 10 H 0.124 0.876 11 C -0.154 4.154 12 C -0.040 4.040 13 H 0.170 0.830 14 C -0.028 4.028 15 N -0.153 5.153 16 N -0.157 5.157 17 C 0.020 3.980 18 C -0.087 4.087 19 C -0.342 4.342 20 S 0.550 5.450 21 C -0.359 4.359 22 C -0.147 4.147 23 O -0.359 6.359 24 Si 0.638 3.362 25 C -0.109 4.109 26 O -0.101 6.101 27 C -0.170 4.170 28 H 0.082 0.918 29 H 0.104 0.896 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.116 0.884 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.104 0.896 36 H 0.082 0.918 37 H 0.258 0.742 38 H 0.130 0.870 39 H 0.122 0.878 40 H 0.212 0.788 41 H 0.136 0.864 42 H 0.248 0.752 43 H -0.198 1.198 44 H -0.178 1.178 45 H 0.160 0.840 46 H 0.118 0.882 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.150 5.583 6.394 9.449 hybrid contribution 0.010 0.185 -1.506 1.517 sum 4.159 5.768 4.888 8.629 Atomic orbital electron populations 1.22481 0.94079 1.03729 1.03527 1.22344 0.94407 0.92560 0.81470 1.21895 1.02508 0.90847 1.04245 1.22484 1.01712 1.02274 0.97361 1.86307 1.71472 1.23080 1.47224 1.18288 0.78513 0.80825 0.82257 1.90928 1.41980 1.70891 1.44345 1.44279 1.55036 1.11517 1.23341 1.21598 0.95517 0.79454 0.99413 0.87630 1.23431 0.99628 1.01836 0.90501 1.21722 1.00793 0.93311 0.88140 0.83014 1.28447 0.95010 0.97785 0.81578 1.74226 1.18610 1.03311 1.19129 1.74770 1.18927 1.26071 0.95922 1.25265 0.95745 0.80592 0.96424 1.16262 1.09374 0.96971 0.86078 1.25772 1.03258 1.06011 0.99143 1.83050 1.51602 1.03831 1.06469 1.25053 1.09778 1.02832 0.98198 1.24683 0.86313 0.94244 1.09413 1.86514 1.15651 1.48358 1.85394 0.94217 0.80769 0.87349 0.73911 1.19858 1.00399 0.95625 0.95016 1.84865 1.63764 1.36873 1.24626 1.23556 0.96139 1.04138 0.93191 0.91842 0.89595 0.91747 0.91093 0.88437 0.91101 0.91743 0.89583 0.91825 0.74162 0.87016 0.87774 0.78818 0.86391 0.75235 1.19762 1.17775 0.84015 0.88235 0.89297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.42 8.37 71.98 0.60 0.18 16 2 C 0.13 0.22 1.13 -10.79 -0.01 0.20 16 3 C -0.14 0.44 8.85 71.98 0.64 1.08 16 4 C -0.18 -0.42 8.37 71.98 0.60 0.19 16 5 O -0.37 -1.24 9.94 -55.43 -0.55 -1.79 16 6 C 0.65 2.90 8.06 129.79 1.05 3.95 16 7 O -0.59 -6.22 11.48 19.81 0.23 -5.99 16 8 N -0.68 1.81 5.27 -567.62 -2.99 -1.18 16 9 C 0.14 -0.39 4.32 45.51 0.20 -0.19 16 10 H 0.11 0.12 7.46 -2.38 -0.02 0.11 16 11 C -0.12 0.64 7.37 31.12 0.23 0.87 16 12 C -0.02 0.08 4.17 -11.01 -0.05 0.04 16 13 H 0.15 -1.50 8.14 -2.39 -0.02 -1.52 16 14 C 0.18 0.78 7.53 88.34 0.67 1.45 16 15 N -0.31 -3.29 11.81 -165.28 -1.95 -5.24 16 16 N -0.31 -3.98 12.17 -166.31 -2.02 -6.01 16 17 C 0.23 1.85 8.08 87.27 0.70 2.56 16 18 C -0.07 -0.24 5.79 -21.23 -0.12 -0.36 16 19 C -0.20 0.54 10.72 67.01 0.72 1.26 16 20 S 0.28 -1.68 20.31 -56.49 -1.15 -2.83 16 21 C -0.24 0.38 5.71 24.53 0.14 0.52 16 22 C -0.03 0.08 2.96 71.24 0.21 0.29 16 23 O -0.55 0.35 12.86 -148.98 -1.92 -1.57 16 24 Si 0.74 -3.69 30.95 68.60 2.12 -1.57 16 25 C -0.08 -0.25 9.86 21.48 0.21 -0.04 16 26 O -0.22 -1.16 10.85 -10.17 -0.11 -1.27 16 27 C -0.13 0.28 7.42 31.12 0.23 0.51 16 28 H 0.06 0.09 8.14 -2.39 -0.02 0.07 16 29 H 0.09 -0.07 8.14 -2.39 -0.02 -0.09 16 30 H 0.06 0.49 5.88 -2.39 -0.01 0.48 16 31 H 0.07 -0.25 8.14 -2.39 -0.02 -0.27 16 32 H 0.10 -0.60 8.14 -2.39 -0.02 -0.62 16 33 H 0.07 -0.25 8.14 -2.39 -0.02 -0.27 16 34 H 0.06 0.49 5.88 -2.38 -0.01 0.48 16 35 H 0.09 -0.07 8.14 -2.39 -0.02 -0.09 16 36 H 0.06 0.09 8.14 -2.39 -0.02 0.07 16 37 H 0.42 -3.46 8.81 -92.71 -0.82 -4.28 16 38 H 0.11 -1.05 8.14 -2.39 -0.02 -1.07 16 39 H 0.10 -0.31 8.09 -2.39 -0.02 -0.33 16 40 H 0.19 -1.32 8.06 -2.91 -0.02 -1.35 16 41 H 0.12 -0.14 7.96 -2.38 -0.02 -0.16 16 42 H 0.40 -3.56 8.70 -74.06 -0.64 -4.21 16 43 H -0.27 -0.53 7.11 99.48 0.71 0.18 16 44 H -0.25 0.54 7.11 99.48 0.71 1.25 16 45 H 0.14 0.87 8.06 -2.91 -0.02 0.84 16 46 H 0.10 0.12 7.77 -2.39 -0.02 0.10 16 47 H 0.09 -0.22 8.14 -2.39 -0.02 -0.24 16 Total: 0.00 -23.12 406.66 -2.72 -25.84 By element: Atomic # 1 Polarization: -10.51 SS G_CDS: -0.39 Total: -10.90 kcal Atomic # 6 Polarization: 6.49 SS G_CDS: 6.01 Total: 12.50 kcal Atomic # 7 Polarization: -5.46 SS G_CDS: -6.97 Total: -12.43 kcal Atomic # 8 Polarization: -8.27 SS G_CDS: -2.35 Total: -10.62 kcal Atomic # 14 Polarization: -3.69 SS G_CDS: 2.12 Total: -1.57 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -1.15 Total: -2.83 kcal Total: -23.12 -2.72 -25.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_271722_14937844_10193906.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.707 kcal (2) G-P(sol) polarization free energy of solvation -23.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds