Wall clock time and date at job start Thu Mar 4 2021 14:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33329 * 125.95331 * 2 1 4 4 C 1.50704 * 122.70500 * 359.97438 * 3 2 1 5 5 O 1.42902 * 109.47200 * 330.00042 * 4 3 2 6 6 Si 1.86303 * 109.46814 * 210.00314 * 4 3 2 7 7 N 1.32119 * 114.58158 * 179.75267 * 3 2 1 8 8 C 1.29683 * 116.86612 * 0.46634 * 7 3 2 9 9 N 1.38609 * 124.94923 * 179.81554 * 8 7 3 10 10 C 1.48173 * 110.99981 * 23.61031 * 9 8 7 11 11 C 1.54121 * 86.53285 * 223.42157 * 10 9 8 12 12 C 1.47130 * 111.06675 * 284.74355 * 9 8 7 13 13 C 1.52802 * 121.40584 * 262.18212 * 12 9 8 14 14 C 1.53969 * 86.74452 * 101.23357 * 13 12 9 15 15 C 1.52998 * 113.64847 * 139.26873 * 14 13 12 16 16 F 1.39898 * 109.47496 * 202.22162 * 15 14 13 17 17 C 1.52797 * 121.26641 * 11.25034 * 12 9 8 18 18 S 1.70970 * 110.10014 * 359.55360 * 8 7 3 19 19 H 1.09005 * 109.46756 * 179.97438 * 1 2 3 20 20 H 1.08995 * 109.47479 * 299.97532 * 1 2 3 21 21 H 1.08999 * 109.47139 * 59.98108 * 1 2 3 22 22 H 1.08994 * 109.47123 * 90.00171 * 4 3 2 23 23 H 0.96704 * 113.99856 * 299.99838 * 5 4 3 24 24 H 1.48502 * 109.99867 * 180.02562 * 6 4 3 25 25 H 1.48505 * 109.99900 * 301.31632 * 6 4 3 26 26 H 1.09002 * 113.71556 * 108.99219 * 10 9 8 27 27 H 1.09003 * 113.71947 * 337.85548 * 10 9 8 28 28 H 1.09004 * 113.78920 * 137.16199 * 11 10 9 29 29 H 1.08996 * 113.79492 * 268.51527 * 11 10 9 30 30 H 1.09001 * 113.66338 * 215.69544 * 13 12 9 31 31 H 1.08999 * 113.66820 * 346.76656 * 13 12 9 32 32 H 1.08999 * 113.57458 * 270.04209 * 14 13 12 33 33 H 1.08999 * 109.46897 * 322.22423 * 15 14 13 34 34 H 1.08999 * 109.46963 * 82.21996 * 15 14 13 35 35 H 1.09003 * 113.66464 * 13.10949 * 17 12 9 36 36 H 1.08994 * 113.67291 * 144.18293 * 17 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2898 1.0793 0.0000 4 6 1.7413 2.4830 -0.0006 5 8 0.4814 2.5019 -0.6747 6 14 2.9325 3.6147 -0.8788 7 7 3.5850 0.8188 0.0052 8 6 3.9315 -0.4309 0.0001 9 7 5.2385 -0.8925 0.0006 10 6 6.1602 0.1232 0.5612 11 6 7.1069 -0.2295 -0.6027 12 6 5.8562 -0.7331 -1.3252 13 6 5.9255 -1.8942 -2.3161 14 6 4.7268 -1.2421 -3.0292 15 6 4.8243 -1.2832 -4.5555 16 9 4.0190 -0.2779 -5.1015 17 6 5.1839 0.0955 -2.4188 18 16 2.5413 -1.4261 0.0001 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3634 0.5134 0.8901 21 1 -0.3633 0.5141 -0.8898 22 1 1.6088 2.8217 1.0269 23 1 0.5240 2.2118 -1.5962 24 1 2.4035 5.0023 -0.8857 25 1 4.2561 3.5796 -0.2062 26 1 6.5558 -0.1379 1.5427 27 1 5.7709 1.1404 0.5170 28 1 7.5671 0.6391 -1.0738 29 1 7.8247 -1.0141 -0.3634 30 1 6.8370 -1.9055 -2.9137 31 1 5.6965 -2.8628 -1.8719 32 1 3.7605 -1.5832 -2.6579 33 1 5.8593 -1.1241 -4.8579 34 1 4.4861 -2.2550 -4.9151 35 1 4.3629 0.7143 -2.0566 36 1 5.8861 0.6452 -3.0454 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_27_17321336_15704122.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 14:06:24 Heat of formation + Delta-G solvation = 42.478369 kcal Electronic energy + Delta-G solvation = -21638.768918 eV Core-core repulsion = 18361.373039 eV Total energy + Delta-G solvation = -3277.395878 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 285.094 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.49153 -42.79600 -40.72390 -37.86893 -37.05942 -33.47404 -31.01710 -29.16016 -28.80212 -26.91429 -25.76982 -24.57056 -24.14672 -21.60899 -20.78474 -19.50034 -18.94810 -18.06170 -17.47676 -17.45826 -16.78794 -16.71661 -16.34813 -16.19252 -15.79961 -15.46708 -14.88667 -14.50063 -14.28807 -14.15146 -13.91211 -13.59355 -13.55470 -13.33484 -13.02667 -12.94481 -12.64039 -12.40843 -12.20992 -12.12041 -12.05147 -11.70116 -11.62358 -10.96459 -10.89614 -10.66808 -10.31870 -10.11793 -9.46575 -5.05208 -0.45795 0.09756 0.63136 1.13583 1.56952 1.65016 1.97956 2.52984 2.92289 3.30239 3.37540 3.41870 3.44392 3.58506 3.85557 3.89650 4.05911 4.11870 4.15066 4.23219 4.31261 4.37058 4.39234 4.55171 4.67091 4.71970 4.74357 4.76978 4.83066 4.86572 4.89521 4.92584 5.04679 5.09548 5.18029 5.22287 5.37282 5.87044 6.42381 6.66388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.203 4.203 3 C 0.016 3.984 4 C -0.025 4.025 5 O -0.538 6.538 6 Si 0.776 3.224 7 N -0.502 5.502 8 C 0.174 3.826 9 N -0.403 5.403 10 C 0.011 3.989 11 C -0.119 4.119 12 C 0.047 3.953 13 C -0.097 4.097 14 C -0.145 4.145 15 C 0.068 3.932 16 F -0.235 7.235 17 C -0.135 4.135 18 S 0.177 5.823 19 H 0.070 0.930 20 H 0.076 0.924 21 H 0.102 0.898 22 H 0.113 0.887 23 H 0.394 0.606 24 H -0.291 1.291 25 H -0.292 1.292 26 H 0.097 0.903 27 H 0.080 0.920 28 H 0.092 0.908 29 H 0.110 0.890 30 H 0.122 0.878 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.088 0.912 35 H 0.069 0.931 36 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.755 -3.319 -3.337 5.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.325 4.325 3 C -0.116 4.116 4 C -0.138 4.138 5 O -0.345 6.345 6 Si 0.682 3.318 7 N -0.223 5.223 8 C -0.193 4.193 9 N -0.125 5.125 10 C -0.118 4.118 11 C -0.157 4.157 12 C -0.044 4.044 13 C -0.135 4.135 14 C -0.164 4.164 15 C 0.014 3.986 16 F -0.216 7.216 17 C -0.174 4.174 18 S 0.433 5.567 19 H 0.089 0.911 20 H 0.095 0.905 21 H 0.121 0.879 22 H 0.131 0.869 23 H 0.245 0.755 24 H -0.219 1.219 25 H -0.219 1.219 26 H 0.115 0.885 27 H 0.099 0.901 28 H 0.111 0.889 29 H 0.128 0.872 30 H 0.141 0.859 31 H 0.099 0.901 32 H 0.102 0.898 33 H 0.114 0.886 34 H 0.107 0.893 35 H 0.088 0.912 36 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 2.218 -3.771 -2.396 4.988 hybrid contribution -0.615 1.386 0.744 1.689 sum 1.602 -2.385 -1.652 3.315 Atomic orbital electron populations 1.20365 0.84724 1.02910 1.04663 1.25938 1.02849 0.93767 1.09941 1.20443 0.87393 0.98047 1.05722 1.24386 0.92712 0.94816 1.01929 1.86501 1.28057 1.89618 1.30347 0.93374 0.74661 0.74804 0.88987 1.66544 1.18016 1.19344 1.18360 1.25334 0.99354 0.90467 1.04159 1.66403 0.95297 1.39152 1.11667 1.23993 0.92222 0.95062 1.00558 1.23198 0.95708 1.02452 0.94372 1.23341 0.94161 0.98878 0.88033 1.22807 0.98443 0.97064 0.95141 1.23184 1.00089 0.97905 0.95184 1.22154 0.95306 0.89560 0.91608 1.92737 1.76835 1.64659 1.87395 1.23263 1.01028 0.96595 0.96504 1.83959 0.95808 1.09475 1.67412 0.91073 0.90536 0.87938 0.86937 0.75524 1.21897 1.21861 0.88482 0.90127 0.88927 0.87200 0.85941 0.90101 0.89781 0.88595 0.89334 0.91230 0.87372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 0.13 8.91 71.24 0.63 0.76 16 2 C -0.20 -0.44 6.50 24.57 0.16 -0.28 16 3 C 0.02 0.06 5.91 41.41 0.24 0.31 16 4 C -0.02 -0.05 2.94 71.24 0.21 0.16 16 5 O -0.54 0.40 10.17 -148.98 -1.52 -1.12 16 6 Si 0.78 2.25 32.09 68.60 2.20 4.45 16 7 N -0.50 -3.04 5.92 -189.86 -1.12 -4.16 16 8 C 0.17 0.84 5.22 179.32 0.94 1.78 16 9 N -0.40 -1.24 6.38 -669.85 -4.27 -5.51 16 10 C 0.01 0.02 7.88 86.33 0.68 0.70 16 11 C -0.12 0.35 8.05 30.97 0.25 0.59 16 12 C 0.05 -0.05 1.35 3.23 0.00 -0.05 16 13 C -0.10 0.47 7.53 30.86 0.23 0.70 16 14 C -0.14 0.38 3.94 -10.15 -0.04 0.34 16 15 C 0.07 -0.27 7.40 71.98 0.53 0.26 16 16 F -0.23 -0.74 17.22 44.97 0.77 0.04 16 17 C -0.14 0.09 6.69 30.85 0.21 0.29 16 18 S 0.18 0.46 22.89 -56.49 -1.29 -0.84 16 19 H 0.07 -0.24 8.14 -2.38 -0.02 -0.26 16 20 H 0.08 -0.04 8.14 -2.39 -0.02 -0.06 16 21 H 0.10 -0.48 6.39 -2.39 -0.02 -0.49 16 22 H 0.11 0.39 7.96 -2.39 -0.02 0.37 16 23 H 0.39 -3.06 8.13 -74.05 -0.60 -3.67 16 24 H -0.29 -2.39 7.11 99.48 0.71 -1.68 16 25 H -0.29 -2.90 7.11 99.48 0.71 -2.19 16 26 H 0.10 0.09 8.14 -2.39 -0.02 0.07 16 27 H 0.08 0.45 6.88 -2.39 -0.02 0.44 16 28 H 0.09 -0.42 8.14 -2.39 -0.02 -0.44 16 29 H 0.11 -0.56 8.14 -2.39 -0.02 -0.58 16 30 H 0.12 -1.12 7.97 -2.39 -0.02 -1.13 16 31 H 0.08 -0.31 8.14 -2.39 -0.02 -0.33 16 32 H 0.08 0.00 7.82 -2.39 -0.02 -0.02 16 33 H 0.10 -0.75 7.95 -2.39 -0.02 -0.77 16 34 H 0.09 -0.58 8.14 -2.39 -0.02 -0.60 16 35 H 0.07 0.22 5.81 -2.39 -0.01 0.21 16 36 H 0.11 -0.30 8.10 -2.39 -0.02 -0.32 16 Total: 0.00 -12.39 305.20 -0.65 -13.03 By element: Atomic # 1 Polarization: -12.00 SS G_CDS: 0.54 Total: -11.46 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: 4.05 Total: 5.57 kcal Atomic # 7 Polarization: -4.28 SS G_CDS: -5.40 Total: -9.68 kcal Atomic # 8 Polarization: 0.40 SS G_CDS: -1.52 Total: -1.12 kcal Atomic # 9 Polarization: -0.74 SS G_CDS: 0.77 Total: 0.04 kcal Atomic # 14 Polarization: 2.25 SS G_CDS: 2.20 Total: 4.45 kcal Atomic # 16 Polarization: 0.46 SS G_CDS: -1.29 Total: -0.84 kcal Total: -12.39 -0.65 -13.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_27_17321336_15704122.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.511 kcal (2) G-P(sol) polarization free energy of solvation -12.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds