Wall clock time and date at job start Thu Mar 4 2021 15:31:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86296 * 109.47309 * 2 1 4 4 C 1.50694 * 109.47154 * 239.99776 * 2 1 3 5 5 C 1.38610 * 120.72303 * 300.00674 * 4 2 1 6 6 N 1.32275 * 119.19798 * 180.02562 * 5 4 2 7 7 C 1.32494 * 120.74098 * 359.97438 * 6 5 4 8 8 N 1.38408 * 119.21537 * 180.02562 * 7 6 5 9 9 C 1.46500 * 119.99769 * 180.02562 * 8 7 6 10 10 C 1.53002 * 109.46766 * 274.99716 * 9 8 7 11 11 C 1.52997 * 109.47092 * 180.02562 * 10 9 8 12 12 C 1.53006 * 109.47164 * 60.00174 * 11 10 9 13 13 C 1.52999 * 109.46623 * 299.99900 * 12 11 10 14 14 C 1.52997 * 109.46927 * 155.00245 * 9 8 7 15 15 C 1.52997 * 109.47457 * 59.99484 * 14 9 8 16 16 C 1.53002 * 109.46817 * 60.00169 * 15 14 9 17 17 O 1.42903 * 109.46923 * 179.97438 * 16 15 14 18 18 C 1.52997 * 109.47127 * 59.99836 * 12 11 10 19 19 C 1.52996 * 109.47346 * 299.99737 * 16 15 14 20 20 N 1.32489 * 121.56688 * 0.27310 * 7 6 5 21 21 C 1.32286 * 120.73744 * 359.44554 * 20 7 6 22 22 H 0.96706 * 114.00006 * 300.00186 * 1 2 3 23 23 H 1.09000 * 109.46855 * 119.99899 * 2 1 3 24 24 H 1.48507 * 109.99970 * 178.67988 * 3 2 1 25 25 H 1.48497 * 110.00169 * 300.00172 * 3 2 1 26 26 H 1.07998 * 120.39716 * 0.03486 * 5 4 2 27 27 H 0.97001 * 119.99660 * 0.02562 * 8 7 6 28 28 H 1.09000 * 109.47381 * 34.99889 * 9 8 7 29 29 H 1.09002 * 109.47067 * 60.00243 * 10 9 8 30 30 H 1.09000 * 109.47140 * 300.00226 * 11 10 9 31 31 H 1.09001 * 109.47375 * 180.02562 * 11 10 9 32 32 H 1.08996 * 109.46884 * 180.02562 * 12 11 10 33 33 H 1.09000 * 109.47486 * 299.99829 * 13 12 11 34 34 H 1.09002 * 109.46716 * 179.97438 * 13 12 11 35 35 H 1.09001 * 109.46989 * 299.99155 * 14 9 8 36 36 H 1.08993 * 109.47194 * 299.99651 * 15 14 9 37 37 H 1.09002 * 109.46695 * 179.97438 * 15 14 9 38 38 H 0.96696 * 114.00096 * 179.97438 * 17 16 15 39 39 H 1.09002 * 109.47153 * 180.02562 * 18 12 11 40 40 H 1.09001 * 109.46832 * 60.00321 * 18 12 11 41 41 H 1.08992 * 109.47554 * 180.02562 * 19 16 15 42 42 H 1.09004 * 109.47108 * 300.00289 * 19 16 15 43 43 H 1.08003 * 120.39823 * 180.29843 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7104 -1.2304 5 6 1.6056 -2.0372 -1.4646 6 7 2.0634 -2.6314 -2.5541 7 6 2.8242 -1.9726 -3.4160 8 7 3.2856 -2.6252 -4.5460 9 6 4.1284 -1.9134 -5.5100 10 6 3.2422 -1.1465 -6.4936 11 6 4.1223 -0.4037 -7.5007 12 6 4.9819 -1.4110 -8.2673 13 6 5.8681 -2.1778 -7.2836 14 6 4.9883 -2.9203 -6.2765 15 6 4.0819 -3.9035 -7.0198 16 6 3.1958 -3.1366 -8.0034 17 8 2.3496 -4.0550 -8.6981 18 6 4.0751 -2.3942 -9.0101 19 6 2.3357 -2.1298 -7.2370 20 7 3.1578 -0.7056 -3.2193 21 6 2.7287 -0.0512 -2.1527 22 1 -0.3933 0.4418 0.7651 23 1 1.7923 -0.5138 0.8900 24 1 3.5347 1.7702 0.0322 25 1 1.5616 2.4679 -1.2084 26 1 0.9854 -2.5791 -0.7661 27 1 3.0508 -3.5537 -4.6997 28 1 4.7741 -1.2129 -4.9804 29 1 2.6295 -0.4292 -5.9475 30 1 4.7683 0.2968 -6.9715 31 1 3.4910 0.1430 -8.2012 32 1 5.6092 -0.8817 -8.9844 33 1 6.5141 -1.4773 -6.7544 34 1 6.4801 -2.8957 -7.8297 35 1 5.6197 -3.4666 -5.5758 36 1 3.4550 -4.4331 -6.3026 37 1 4.6947 -4.6205 -7.5663 38 1 1.7587 -3.6374 -9.3396 39 1 4.6874 -3.1120 -9.5558 40 1 3.4438 -1.8478 -9.7109 41 1 1.7041 -1.5837 -7.9376 42 1 1.7087 -2.6594 -6.5197 43 1 3.0001 0.9830 -2.0003 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_27_17849788_12175864.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 15:31:11 Heat of formation + Delta-G solvation = -25.720739 kcal Electronic energy + Delta-G solvation = -26346.275357 eV Core-core repulsion = 22778.352010 eV Total energy + Delta-G solvation = -3567.923347 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.93260 -42.05092 -38.18556 -37.61544 -36.50757 -34.92034 -33.87508 -33.48642 -32.03349 -31.23724 -27.30677 -27.05396 -26.27428 -25.61473 -23.34266 -22.81043 -22.41862 -22.09119 -19.75257 -19.00642 -18.47638 -18.22784 -17.90550 -16.80893 -16.43618 -16.28865 -15.97706 -15.87760 -15.54220 -15.42744 -15.23147 -14.94226 -14.87240 -14.67510 -14.35053 -14.04184 -13.76639 -13.60530 -13.42647 -13.20469 -13.07933 -12.52142 -12.36770 -12.09909 -12.04661 -11.99867 -11.96366 -11.85071 -11.64638 -11.48607 -11.16284 -10.76053 -10.59333 -10.50672 -10.04394 -9.19879 -4.96195 -0.13173 -0.01158 1.30477 1.64667 1.67605 1.95813 2.62380 2.91296 3.05458 3.34070 3.37898 3.40522 3.44826 3.60965 3.73420 3.82633 3.86664 3.90387 4.02941 4.08305 4.09035 4.13805 4.16405 4.20670 4.24119 4.50793 4.52411 4.56709 4.60843 4.63218 4.69331 4.83073 4.91770 4.93846 4.94190 5.00025 5.03940 5.10007 5.11248 5.24384 5.33781 5.36465 5.40953 5.63573 5.86525 6.25434 6.76883 6.95165 7.10882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.566 6.566 2 C -0.054 4.054 3 Si 0.771 3.229 4 C -0.253 4.253 5 C 0.218 3.782 6 N -0.587 5.587 7 C 0.554 3.446 8 N -0.684 5.684 9 C 0.173 3.827 10 C -0.088 4.088 11 C -0.105 4.105 12 C -0.082 4.082 13 C -0.106 4.106 14 C -0.084 4.084 15 C -0.101 4.101 16 C 0.137 3.863 17 O -0.578 6.578 18 C -0.134 4.134 19 C -0.131 4.131 20 N -0.575 5.575 21 C 0.175 3.825 22 H 0.406 0.594 23 H 0.102 0.898 24 H -0.284 1.284 25 H -0.298 1.298 26 H 0.193 0.807 27 H 0.415 0.585 28 H 0.085 0.915 29 H 0.055 0.945 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.090 0.910 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.059 0.941 37 H 0.077 0.923 38 H 0.389 0.611 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.050 0.950 43 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.858 3.187 2.786 4.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.376 6.376 2 C -0.165 4.165 3 Si 0.677 3.323 4 C -0.261 4.261 5 C 0.050 3.950 6 N -0.309 5.309 7 C 0.197 3.803 8 N -0.320 5.320 9 C 0.068 3.932 10 C -0.108 4.108 11 C -0.143 4.143 12 C -0.101 4.101 13 C -0.144 4.144 14 C -0.103 4.103 15 C -0.139 4.139 16 C 0.097 3.903 17 O -0.386 6.386 18 C -0.172 4.172 19 C -0.169 4.169 20 N -0.298 5.298 21 C 0.008 3.992 22 H 0.257 0.743 23 H 0.120 0.880 24 H -0.211 1.211 25 H -0.225 1.225 26 H 0.210 0.790 27 H 0.254 0.746 28 H 0.103 0.897 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.108 0.892 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.106 0.894 36 H 0.077 0.923 37 H 0.095 0.905 38 H 0.238 0.762 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.087 0.913 42 H 0.069 0.931 43 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 2.213 2.631 1.217 3.648 hybrid contribution -0.913 -0.011 0.117 0.921 sum 1.300 2.620 1.335 3.215 Atomic orbital electron populations 1.86435 1.17127 1.82425 1.51597 1.24425 0.85872 1.10376 0.95849 0.94162 0.77535 0.75515 0.85080 1.21070 1.06254 0.97634 1.01155 1.23254 0.89871 0.91018 0.90825 1.68032 1.16548 1.39948 1.06351 1.19608 0.87322 0.85801 0.87588 1.44422 1.53909 1.14573 1.19130 1.20983 0.90692 0.93685 0.87801 1.21339 0.96779 0.96653 0.95994 1.21546 0.98080 0.97394 0.97322 1.21068 0.96291 0.95574 0.97136 1.21567 0.97025 0.99550 0.96285 1.21306 0.96171 0.95582 0.97221 1.21440 0.97403 0.97667 0.97343 1.21052 0.89452 0.88271 0.91502 1.86517 1.55770 1.37862 1.58479 1.22161 0.98787 0.98607 0.97621 1.22107 0.97974 0.97343 0.99434 1.67896 1.29086 1.08886 1.23934 1.22848 0.90248 0.98780 0.87297 0.74255 0.87990 1.21147 1.22542 0.79031 0.74625 0.89700 0.92686 0.91064 0.91112 0.89177 0.90502 0.90047 0.89362 0.92265 0.90455 0.76160 0.90922 0.90899 0.91265 0.93117 0.82157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 1.33 12.76 -148.98 -1.90 -0.57 16 2 C -0.05 0.13 2.84 71.23 0.20 0.34 16 3 Si 0.77 -2.78 29.87 68.60 2.05 -0.73 16 4 C -0.25 -1.25 5.43 -19.69 -0.11 -1.36 16 5 C 0.22 1.33 10.92 84.71 0.93 2.26 16 6 N -0.59 -5.93 10.46 -197.98 -2.07 -8.00 16 7 C 0.55 5.56 8.40 261.49 2.20 7.76 16 8 N -0.68 -3.94 4.38 -330.44 -1.45 -5.39 16 9 C 0.17 0.48 2.05 44.99 0.09 0.57 16 10 C -0.09 -0.24 2.89 -10.79 -0.03 -0.27 16 11 C -0.11 0.09 5.19 30.60 0.16 0.24 16 12 C -0.08 0.23 3.20 -10.79 -0.03 0.19 16 13 C -0.11 0.31 5.19 30.58 0.16 0.47 16 14 C -0.08 0.05 2.88 -10.81 -0.03 0.02 16 15 C -0.10 -0.13 4.67 30.59 0.14 0.02 16 16 C 0.14 0.17 1.15 -10.83 -0.01 0.15 16 17 O -0.58 -1.97 12.98 -148.98 -1.93 -3.91 16 18 C -0.13 0.22 4.81 30.56 0.15 0.36 16 19 C -0.13 -0.34 4.66 30.59 0.14 -0.20 16 20 N -0.58 -5.99 9.20 -197.98 -1.82 -7.81 16 21 C 0.18 1.37 9.92 84.71 0.84 2.21 16 22 H 0.41 -5.26 8.74 -74.05 -0.65 -5.91 16 23 H 0.10 -0.75 7.96 -2.39 -0.02 -0.77 16 24 H -0.28 -0.45 7.11 99.48 0.71 0.26 16 25 H -0.30 -1.31 7.11 99.48 0.71 -0.60 16 26 H 0.19 0.12 8.06 -2.91 -0.02 0.10 16 27 H 0.41 2.02 6.98 -92.71 -0.65 1.37 16 28 H 0.08 0.43 7.50 -2.39 -0.02 0.41 16 29 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.07 -0.06 8.14 -2.39 -0.02 -0.08 16 31 H 0.07 -0.09 8.14 -2.39 -0.02 -0.11 16 32 H 0.09 -0.40 8.14 -2.39 -0.02 -0.42 16 33 H 0.08 -0.28 8.14 -2.39 -0.02 -0.30 16 34 H 0.08 -0.33 8.14 -2.39 -0.02 -0.35 16 35 H 0.09 -0.09 8.14 -2.39 -0.02 -0.11 16 36 H 0.06 0.17 6.50 -2.39 -0.02 0.15 16 37 H 0.08 0.10 8.14 -2.39 -0.02 0.08 16 38 H 0.39 -1.26 9.04 -74.06 -0.67 -1.93 16 39 H 0.07 -0.08 8.14 -2.39 -0.02 -0.10 16 40 H 0.07 -0.20 8.14 -2.39 -0.02 -0.22 16 41 H 0.07 0.11 8.14 -2.39 -0.02 0.09 16 42 H 0.05 0.33 7.60 -2.38 -0.02 0.31 16 43 H 0.16 0.85 5.04 -2.91 -0.01 0.84 16 Total: 0.00 -17.32 325.06 -3.21 -20.53 By element: Atomic # 1 Polarization: -6.02 SS G_CDS: -0.87 Total: -6.89 kcal Atomic # 6 Polarization: 7.98 SS G_CDS: 4.79 Total: 12.77 kcal Atomic # 7 Polarization: -15.86 SS G_CDS: -5.34 Total: -21.20 kcal Atomic # 8 Polarization: -0.64 SS G_CDS: -3.83 Total: -4.48 kcal Atomic # 14 Polarization: -2.78 SS G_CDS: 2.05 Total: -0.73 kcal Total: -17.32 -3.21 -20.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_27_17849788_12175864.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.193 kcal (2) G-P(sol) polarization free energy of solvation -17.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds