Wall clock time and date at job start Thu Mar 4 2021 15:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86296 * 109.46827 * 2 1 4 4 C 1.50699 * 109.46853 * 240.00064 * 2 1 3 5 5 C 1.38837 * 120.33715 * 299.99489 * 4 2 1 6 6 C 1.38343 * 118.50255 * 180.02562 * 5 4 2 7 7 C 1.39091 * 119.10294 * 0.02562 * 6 5 4 8 8 N 1.39004 * 119.70856 * 179.97438 * 7 6 5 9 9 C 1.46499 * 119.99990 * 359.97438 * 8 7 6 10 10 C 1.53002 * 109.47125 * 84.99847 * 9 8 7 11 11 C 1.52997 * 109.47092 * 60.00151 * 10 9 8 12 12 C 1.53006 * 109.47164 * 60.00174 * 11 10 9 13 13 C 1.52999 * 109.46623 * 299.99900 * 12 11 10 14 14 C 1.52997 * 109.47695 * 205.00008 * 9 8 7 15 15 C 1.52997 * 109.47457 * 179.97438 * 14 9 8 16 16 C 1.53002 * 109.46817 * 60.00169 * 15 14 9 17 17 O 1.42903 * 109.46923 * 179.97438 * 16 15 14 18 18 C 1.52997 * 109.47127 * 59.99836 * 12 11 10 19 19 C 1.52996 * 109.47346 * 299.99737 * 16 15 14 20 20 N 1.32429 * 120.58716 * 0.25036 * 7 6 5 21 21 C 1.31936 * 121.62476 * 359.47854 * 20 7 6 22 22 H 0.96694 * 114.00089 * 60.00065 * 1 2 3 23 23 H 1.08997 * 109.47013 * 119.99722 * 2 1 3 24 24 H 1.48501 * 110.00152 * 60.00047 * 3 2 1 25 25 H 1.48497 * 110.00002 * 181.32080 * 3 2 1 26 26 H 1.07997 * 120.74729 * 0.02562 * 5 4 2 27 27 H 1.07998 * 120.44772 * 180.02562 * 6 5 4 28 28 H 0.96998 * 120.00492 * 179.97438 * 8 7 6 29 29 H 1.09004 * 109.47041 * 325.00130 * 9 8 7 30 30 H 1.09002 * 109.47067 * 300.00298 * 10 9 8 31 31 H 1.09000 * 109.47140 * 300.00226 * 11 10 9 32 32 H 1.09001 * 109.47375 * 180.02562 * 11 10 9 33 33 H 1.08996 * 109.46884 * 180.02562 * 12 11 10 34 34 H 1.09000 * 109.47486 * 299.99829 * 13 12 11 35 35 H 1.09002 * 109.46716 * 179.97438 * 13 12 11 36 36 H 1.09001 * 109.46989 * 59.99548 * 14 9 8 37 37 H 1.08993 * 109.47194 * 299.99651 * 15 14 9 38 38 H 1.09002 * 109.46695 * 179.97438 * 15 14 9 39 39 H 0.96696 * 114.00096 * 179.97438 * 17 16 15 40 40 H 1.09002 * 109.47153 * 180.02562 * 18 12 11 41 41 H 1.09001 * 109.46832 * 60.00321 * 18 12 11 42 42 H 1.08992 * 109.47554 * 180.02562 * 19 16 15 43 43 H 1.09004 * 109.47108 * 300.00289 * 19 16 15 44 44 H 1.07998 * 119.57488 * 180.25318 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 1.6002 -2.0395 -1.4571 6 6 2.0824 -2.6546 -2.5986 7 6 2.8784 -1.9250 -3.4754 8 7 3.3701 -2.5307 -4.6259 9 6 3.0497 -3.9316 -4.9103 10 6 1.6979 -4.0113 -5.6225 11 6 1.7658 -3.2272 -6.9346 12 6 2.8509 -3.8267 -7.8314 13 6 4.2026 -3.7470 -7.1191 14 6 4.1347 -4.5312 -5.8070 15 6 3.8004 -5.9945 -6.1034 16 6 2.4486 -6.0745 -6.8155 17 8 2.1366 -7.4412 -7.0929 18 6 2.5163 -5.2898 -8.1283 19 6 1.3635 -5.4751 -5.9188 20 7 3.1766 -0.6600 -3.2211 21 6 2.7266 -0.0464 -2.1432 22 1 -0.3933 0.4417 -0.7650 23 1 1.7923 -0.5138 0.8900 24 1 1.5614 2.4679 1.2085 25 1 3.5345 1.7704 -0.0322 26 1 0.9803 -2.5810 -0.7580 27 1 1.8440 -3.6873 -2.8062 28 1 3.9253 -2.0258 -5.2405 29 1 3.0013 -4.4903 -3.9755 30 1 0.9249 -3.5842 -4.9836 31 1 2.0042 -2.1848 -6.7230 32 1 0.8027 -3.2835 -7.4418 33 1 2.8996 -3.2678 -8.7659 34 1 4.4410 -2.7047 -6.9075 35 1 4.9756 -4.1745 -7.7578 36 1 5.0977 -4.4744 -5.2996 37 1 3.7524 -6.5527 -5.1686 38 1 4.5733 -6.4213 -6.7427 39 1 1.2909 -7.5678 -7.5443 40 1 3.2896 -5.7170 -8.7669 41 1 1.5533 -5.3464 -8.6358 42 1 0.4004 -5.5326 -6.4258 43 1 1.3154 -6.0335 -4.9838 44 1 2.9871 0.9874 -1.9706 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_27_17849788_13915762.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 15:31:15 Heat of formation + Delta-G solvation = -44.122692 kcal Electronic energy + Delta-G solvation = -26109.828021 eV Core-core repulsion = 22606.532616 eV Total energy + Delta-G solvation = -3503.295405 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.82128 -41.23652 -38.25129 -37.56608 -35.95644 -33.79492 -33.63760 -33.00860 -31.94744 -30.38316 -27.09589 -26.98727 -25.74042 -24.74890 -22.89868 -22.67323 -22.45712 -21.83594 -18.91569 -18.64284 -18.42600 -17.97184 -17.23897 -16.50951 -16.17582 -16.01083 -15.92476 -15.78830 -15.55316 -15.29493 -15.06917 -14.79889 -14.40508 -14.34698 -14.28828 -13.97061 -13.60005 -13.54548 -13.39811 -13.32833 -12.92686 -12.58033 -12.34254 -12.17167 -12.08582 -11.95784 -11.83235 -11.39088 -11.31038 -11.18893 -10.78955 -10.59680 -10.43452 -10.38930 -10.37492 -8.67200 -4.99105 0.23375 0.40745 1.34528 1.63728 1.97270 2.07105 2.84004 3.14560 3.38658 3.43703 3.55771 3.62752 3.78807 3.80977 3.88247 3.96309 3.99956 4.05636 4.07618 4.13910 4.16904 4.22238 4.24812 4.32704 4.41285 4.51277 4.55946 4.60142 4.70634 4.74532 4.80688 4.82645 4.96444 4.99854 5.01682 5.02078 5.04600 5.09455 5.16096 5.29378 5.29898 5.36732 5.41658 5.47949 5.55379 6.03075 6.55151 6.79966 6.85828 7.14981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.557 6.557 2 C -0.054 4.054 3 Si 0.766 3.234 4 C -0.237 4.237 5 C -0.012 4.012 6 C -0.243 4.243 7 C 0.400 3.600 8 N -0.709 5.709 9 C 0.167 3.833 10 C -0.092 4.092 11 C -0.104 4.104 12 C -0.082 4.082 13 C -0.112 4.112 14 C -0.082 4.082 15 C -0.097 4.097 16 C 0.134 3.866 17 O -0.579 6.579 18 C -0.135 4.135 19 C -0.132 4.132 20 N -0.563 5.563 21 C 0.147 3.853 22 H 0.394 0.606 23 H 0.106 0.894 24 H -0.297 1.297 25 H -0.287 1.287 26 H 0.143 0.857 27 H 0.144 0.856 28 H 0.405 0.595 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.085 0.915 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.390 0.610 40 H 0.065 0.935 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.069 0.931 44 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.848 -0.003 -3.688 4.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.364 6.364 2 C -0.165 4.165 3 Si 0.673 3.327 4 C -0.243 4.243 5 C -0.037 4.037 6 C -0.268 4.268 7 C 0.164 3.836 8 N -0.341 5.341 9 C 0.062 3.938 10 C -0.112 4.112 11 C -0.142 4.142 12 C -0.100 4.100 13 C -0.150 4.150 14 C -0.101 4.101 15 C -0.136 4.136 16 C 0.094 3.906 17 O -0.387 6.387 18 C -0.172 4.172 19 C -0.170 4.170 20 N -0.281 5.281 21 C -0.010 4.010 22 H 0.244 0.756 23 H 0.123 0.877 24 H -0.224 1.224 25 H -0.214 1.214 26 H 0.161 0.839 27 H 0.162 0.838 28 H 0.243 0.757 29 H 0.101 0.899 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.104 0.896 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.239 0.761 40 H 0.084 0.916 41 H 0.091 0.909 42 H 0.095 0.905 43 H 0.088 0.912 44 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -0.228 0.425 -3.064 3.101 hybrid contribution -0.670 -0.784 0.346 1.088 sum -0.898 -0.359 -2.718 2.885 Atomic orbital electron populations 1.86451 1.17399 1.82109 1.50463 1.24840 0.85056 1.10113 0.96497 0.93854 0.77896 0.75861 0.85101 1.21024 1.05973 0.96805 1.00489 1.21361 0.93907 0.93395 0.95074 1.21620 1.05493 1.02221 0.97442 1.18584 0.89368 0.88412 0.87271 1.44645 1.55555 1.11995 1.21883 1.20991 0.94238 0.80440 0.98144 1.21433 0.97006 0.95397 0.97334 1.21482 0.98923 0.98963 0.94811 1.21022 0.94764 0.95404 0.98819 1.21608 0.97426 1.00262 0.95683 1.21218 0.98489 0.94132 0.96265 1.21379 0.95863 0.95497 1.00818 1.21129 0.94597 0.80972 0.93894 1.86524 1.44512 1.25954 1.81683 1.22191 1.02557 0.95456 0.97025 1.22152 0.98990 0.95218 1.00675 1.67150 1.28072 1.09869 1.22971 1.22457 0.91504 0.99177 0.87879 0.75634 0.87662 1.22440 1.21383 0.83943 0.83841 0.75717 0.89910 0.90881 0.92028 0.91561 0.90319 0.91237 0.90952 0.89642 0.91329 0.91047 0.76051 0.91636 0.90928 0.90456 0.91183 0.81645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.09 12.78 -148.98 -1.90 -1.99 16 2 C -0.05 0.01 2.84 71.24 0.20 0.21 16 3 Si 0.77 -1.16 29.82 68.60 2.05 0.88 16 4 C -0.24 -0.29 5.40 -19.76 -0.11 -0.40 16 5 C -0.01 -0.02 9.77 22.44 0.22 0.20 16 6 C -0.24 -0.31 8.83 22.50 0.20 -0.11 16 7 C 0.40 1.21 7.63 133.04 1.02 2.23 16 8 N -0.71 0.58 4.40 -324.55 -1.43 -0.85 16 9 C 0.17 -0.53 1.74 44.99 0.08 -0.45 16 10 C -0.09 0.33 2.80 -10.78 -0.03 0.30 16 11 C -0.10 0.37 5.04 30.60 0.15 0.53 16 12 C -0.08 0.34 3.20 -10.79 -0.03 0.31 16 13 C -0.11 0.49 5.02 30.60 0.15 0.64 16 14 C -0.08 0.30 2.88 -10.79 -0.03 0.27 16 15 C -0.10 0.16 4.84 30.59 0.15 0.31 16 16 C 0.13 -0.31 1.15 -10.76 -0.01 -0.33 16 17 O -0.58 -0.08 12.98 -148.98 -1.93 -2.01 16 18 C -0.13 0.47 4.82 30.63 0.15 0.62 16 19 C -0.13 0.51 4.82 30.61 0.15 0.66 16 20 N -0.56 -3.03 10.39 -193.26 -2.01 -5.04 16 21 C 0.15 0.36 9.84 84.64 0.83 1.19 16 22 H 0.39 -2.95 8.70 -74.06 -0.64 -3.60 16 23 H 0.11 0.09 7.96 -2.39 -0.02 0.07 16 24 H -0.30 -1.69 7.11 99.48 0.71 -0.98 16 25 H -0.29 -1.01 7.11 99.48 0.71 -0.30 16 26 H 0.14 -0.11 8.06 -2.91 -0.02 -0.13 16 27 H 0.14 -0.25 6.07 -2.91 -0.02 -0.27 16 28 H 0.41 -0.45 6.99 -92.71 -0.65 -1.09 16 29 H 0.08 -0.22 6.45 -2.38 -0.02 -0.24 16 30 H 0.07 -0.16 7.66 -2.39 -0.02 -0.17 16 31 H 0.06 -0.11 7.60 -2.39 -0.02 -0.13 16 32 H 0.07 -0.24 8.14 -2.39 -0.02 -0.26 16 33 H 0.08 -0.34 8.14 -2.39 -0.02 -0.36 16 34 H 0.07 -0.33 6.51 -2.39 -0.02 -0.35 16 35 H 0.07 -0.30 8.14 -2.39 -0.02 -0.32 16 36 H 0.09 -0.29 8.14 -2.39 -0.02 -0.31 16 37 H 0.07 -0.05 8.14 -2.39 -0.02 -0.07 16 38 H 0.07 -0.02 8.14 -2.39 -0.02 -0.04 16 39 H 0.39 -2.61 9.05 -74.06 -0.67 -3.28 16 40 H 0.06 -0.12 8.14 -2.39 -0.02 -0.14 16 41 H 0.07 -0.34 8.14 -2.39 -0.02 -0.36 16 42 H 0.08 -0.39 8.14 -2.39 -0.02 -0.41 16 43 H 0.07 -0.21 8.14 -2.38 -0.02 -0.23 16 44 H 0.17 -0.26 4.88 -2.91 -0.01 -0.27 16 Total: 0.00 -13.03 326.52 -3.03 -16.06 By element: Atomic # 1 Polarization: -12.35 SS G_CDS: -0.88 Total: -13.23 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: 3.08 Total: 6.18 kcal Atomic # 7 Polarization: -2.45 SS G_CDS: -3.44 Total: -5.89 kcal Atomic # 8 Polarization: -0.16 SS G_CDS: -3.84 Total: -4.00 kcal Atomic # 14 Polarization: -1.16 SS G_CDS: 2.05 Total: 0.88 kcal Total: -13.03 -3.03 -16.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_27_17849788_13915762.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.061 kcal (2) G-P(sol) polarization free energy of solvation -13.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds