Wall clock time and date at job start Thu Mar 4 2021 15:31:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86298 * 109.47063 * 2 1 4 4 C 1.50698 * 109.47067 * 120.00044 * 2 1 3 5 5 C 1.33323 * 125.95671 * 64.97400 * 4 2 1 6 6 N 1.32116 * 114.58661 * 179.75265 * 5 4 2 7 7 C 1.29692 * 116.86274 * 0.47366 * 6 5 4 8 8 N 1.38609 * 124.95020 * 179.81115 * 7 6 5 9 9 C 1.46500 * 119.99891 * 359.70147 * 8 7 6 10 10 C 1.53002 * 109.46766 * 274.99617 * 9 8 7 11 11 C 1.52997 * 109.47092 * 180.02562 * 10 9 8 12 12 C 1.53006 * 109.47164 * 60.00174 * 11 10 9 13 13 C 1.52999 * 109.46623 * 299.99900 * 12 11 10 14 14 C 1.52997 * 109.46927 * 155.00146 * 9 8 7 15 15 C 1.52997 * 109.47457 * 59.99484 * 14 9 8 16 16 C 1.53002 * 109.46817 * 60.00169 * 15 14 9 17 17 O 1.42903 * 109.46923 * 179.97438 * 16 15 14 18 18 C 1.52997 * 109.47127 * 59.99836 * 12 11 10 19 19 C 1.52996 * 109.47346 * 299.99737 * 16 15 14 20 20 S 1.70968 * 110.09946 * 359.55101 * 7 6 5 21 21 H 0.96695 * 114.00087 * 299.99775 * 1 2 3 22 22 H 1.09001 * 109.46922 * 239.99804 * 2 1 3 23 23 H 1.48495 * 109.99915 * 299.99800 * 3 2 1 24 24 H 1.48497 * 109.99981 * 61.31897 * 3 2 1 25 25 H 1.08007 * 122.70579 * 0.02562 * 5 4 2 26 26 H 0.97001 * 119.99538 * 179.69989 * 8 7 6 27 27 H 1.09000 * 109.47381 * 34.99791 * 9 8 7 28 28 H 1.09002 * 109.47067 * 60.00243 * 10 9 8 29 29 H 1.09000 * 109.47140 * 300.00226 * 11 10 9 30 30 H 1.09001 * 109.47375 * 180.02562 * 11 10 9 31 31 H 1.08996 * 109.46884 * 180.02562 * 12 11 10 32 32 H 1.09000 * 109.47486 * 299.99829 * 13 12 11 33 33 H 1.09002 * 109.46716 * 179.97438 * 13 12 11 34 34 H 1.09001 * 109.46989 * 299.99155 * 14 9 8 35 35 H 1.08993 * 109.47194 * 299.99651 * 15 14 9 36 36 H 1.09002 * 109.46695 * 179.97438 * 15 14 9 37 37 H 0.96696 * 114.00096 * 179.97438 * 17 16 15 38 38 H 1.09002 * 109.47153 * 180.02562 * 18 12 11 39 39 H 1.09001 * 109.46832 * 60.00321 * 18 12 11 40 40 H 1.08992 * 109.47554 * 180.02562 * 19 16 15 41 41 H 1.09004 * 109.47108 * 300.00289 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 1.7618 -2.0024 1.5125 6 7 2.3019 -2.3914 2.6537 7 6 2.9114 -1.4847 3.3527 8 7 3.5315 -1.7061 4.5724 9 6 3.5228 -3.0453 5.1662 10 6 2.2269 -3.2450 5.9548 11 6 2.2180 -4.6434 6.5755 12 6 3.4156 -4.7915 7.5163 13 6 4.7113 -4.5918 6.7276 14 6 4.7202 -3.1939 6.1068 15 6 4.6311 -2.1436 7.2158 16 6 3.3353 -2.3434 8.0044 17 8 3.2523 -1.3629 9.0406 18 6 3.3262 -3.7408 8.6249 19 6 2.1378 -2.1948 7.0639 20 16 2.8448 0.0217 2.5469 21 1 -0.3933 0.4416 0.7650 22 1 1.7923 -0.5139 -0.8900 23 1 1.5615 2.4678 -1.2085 24 1 1.5879 2.4585 1.2242 25 1 1.2299 -2.6776 0.8584 26 1 3.9712 -0.9742 5.0328 27 1 3.5863 -3.7935 4.3761 28 1 1.3738 -3.1391 5.2847 29 1 2.2817 -5.3919 5.7857 30 1 1.2947 -4.7859 7.1370 31 1 3.4094 -5.7879 7.9581 32 1 4.7750 -5.3403 5.9378 33 1 5.5644 -4.6968 7.3979 34 1 5.6434 -3.0516 5.5450 35 1 4.6377 -1.1473 6.7740 36 1 5.4841 -2.2499 7.8861 37 1 2.4539 -1.4294 9.5821 38 1 4.1795 -3.8460 9.2949 39 1 2.4030 -3.8832 9.1867 40 1 1.2146 -2.3366 7.6257 41 1 2.1443 -1.1983 6.6221 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_27_17849788_15704118.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 15:31:20 Heat of formation + Delta-G solvation = -39.874152 kcal Electronic energy + Delta-G solvation = -24645.306931 eV Core-core repulsion = 21231.348003 eV Total energy + Delta-G solvation = -3413.958928 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 309.119 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.84717 -40.55719 -38.15287 -37.59447 -36.34151 -33.85379 -32.85488 -31.75181 -30.91065 -27.22106 -27.07937 -26.22225 -24.40702 -22.89145 -22.56222 -22.34761 -20.64511 -19.91948 -18.68133 -18.15208 -17.88758 -17.10117 -16.48808 -16.27956 -15.97228 -15.81468 -15.74345 -15.51691 -15.24730 -15.03055 -14.85081 -14.64998 -14.34396 -13.91805 -13.73829 -13.60284 -13.43182 -13.11414 -12.85727 -12.44085 -12.33901 -12.13408 -12.03802 -11.97409 -11.95301 -11.64399 -11.48936 -11.09917 -10.86921 -10.70946 -10.50341 -10.20869 -10.15304 -8.70110 -5.03181 0.01008 0.07190 0.73024 1.27177 1.57022 1.92050 2.06815 2.13962 2.98900 3.33671 3.35684 3.37626 3.65725 3.73490 3.81872 3.89296 3.95884 4.01449 4.05478 4.09766 4.14247 4.18449 4.23411 4.48021 4.55303 4.56691 4.59161 4.65918 4.77679 4.84163 4.87324 4.89352 4.93437 4.95231 5.01226 5.06328 5.12800 5.19201 5.29791 5.33308 5.39610 5.87916 6.07068 6.37386 6.64308 7.04371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.527 6.527 2 C -0.016 4.016 3 Si 0.652 3.348 4 C -0.307 4.307 5 C 0.121 3.879 6 N -0.550 5.550 7 C 0.329 3.671 8 N -0.687 5.687 9 C 0.171 3.829 10 C -0.092 4.092 11 C -0.109 4.109 12 C -0.086 4.086 13 C -0.108 4.108 14 C -0.092 4.092 15 C -0.099 4.099 16 C 0.135 3.865 17 O -0.561 6.561 18 C -0.138 4.138 19 C -0.136 4.136 20 S 0.083 5.917 21 H 0.376 0.624 22 H 0.125 0.875 23 H -0.238 1.238 24 H -0.244 1.244 25 H 0.175 0.825 26 H 0.412 0.588 27 H 0.095 0.905 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.086 0.914 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.377 0.623 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.246 -0.795 1.890 3.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.333 6.333 2 C -0.130 4.130 3 Si 0.552 3.448 4 C -0.429 4.429 5 C -0.031 4.031 6 N -0.275 5.275 7 C -0.041 4.041 8 N -0.326 5.326 9 C 0.064 3.936 10 C -0.112 4.112 11 C -0.147 4.147 12 C -0.105 4.105 13 C -0.146 4.146 14 C -0.111 4.111 15 C -0.137 4.137 16 C 0.095 3.905 17 O -0.367 6.367 18 C -0.176 4.176 19 C -0.174 4.174 20 S 0.332 5.668 21 H 0.224 0.776 22 H 0.143 0.857 23 H -0.161 1.161 24 H -0.168 1.168 25 H 0.192 0.808 26 H 0.251 0.749 27 H 0.113 0.887 28 H 0.098 0.902 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.104 0.896 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.225 0.775 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.057 0.228 1.560 3.439 hybrid contribution -1.930 -0.643 0.489 2.092 sum 1.127 -0.415 2.049 2.375 Atomic orbital electron populations 1.86614 1.17578 1.79920 1.49187 1.24057 0.83419 1.09796 0.95711 0.95162 0.91868 0.75272 0.82526 1.25481 1.15232 0.98324 1.03889 1.21332 0.96489 0.93093 0.92142 1.66499 1.18916 1.33441 1.08689 1.23739 0.95391 0.93082 0.91926 1.44265 1.58885 1.12247 1.17199 1.21006 0.94205 0.83487 0.94855 1.21417 0.98500 0.94920 0.96405 1.21561 0.98136 0.96168 0.98813 1.21073 0.94975 0.98995 0.95410 1.21545 0.97831 0.95455 0.99729 1.21361 0.98181 0.95983 0.95554 1.21425 0.96867 0.98660 0.96759 1.21053 0.95034 0.87365 0.87036 1.86545 1.47248 1.55818 1.47119 1.22190 1.02720 0.94632 0.98009 1.22170 0.98176 0.99762 0.97245 1.84068 1.55568 1.11453 1.15702 0.77614 0.85740 1.16121 1.16767 0.80809 0.74889 0.88700 0.90188 0.91161 0.91448 0.90381 0.91004 0.90906 0.89594 0.91613 0.90476 0.77547 0.90959 0.91569 0.91632 0.91322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.73 12.88 -35.23 -0.45 -1.18 16 2 C -0.02 0.00 2.99 36.00 0.11 0.11 16 3 Si 0.65 -0.21 31.07 -169.99 -5.28 -5.49 16 4 C -0.31 -0.26 5.73 -36.03 -0.21 -0.47 16 5 C 0.12 0.22 11.24 -19.15 -0.22 0.01 16 6 N -0.55 -1.47 9.90 -15.21 -0.15 -1.62 16 7 C 0.33 0.41 8.06 -87.68 -0.71 -0.30 16 8 N -0.69 0.36 4.38 -55.78 -0.24 0.11 16 9 C 0.17 -0.13 2.19 -67.93 -0.15 -0.27 16 10 C -0.09 0.05 2.89 -90.62 -0.26 -0.21 16 11 C -0.11 0.14 5.19 -26.73 -0.14 0.00 16 12 C -0.09 0.15 3.20 -90.62 -0.29 -0.14 16 13 C -0.11 0.22 5.19 -26.76 -0.14 0.08 16 14 C -0.09 0.16 2.88 -90.65 -0.26 -0.10 16 15 C -0.10 0.11 4.67 -26.73 -0.12 -0.02 16 16 C 0.14 -0.10 1.15 -90.67 -0.10 -0.21 16 17 O -0.56 -0.23 12.98 -35.23 -0.46 -0.68 16 18 C -0.14 0.19 4.81 -26.78 -0.13 0.06 16 19 C -0.14 0.09 4.66 -26.73 -0.12 -0.03 16 20 S 0.08 0.03 20.59 -107.50 -2.21 -2.19 16 21 H 0.38 -0.43 8.70 45.56 0.40 -0.04 16 22 H 0.12 -0.11 7.96 -51.93 -0.41 -0.52 16 23 H -0.24 -0.55 7.11 56.52 0.40 -0.15 16 24 H -0.24 -0.39 7.11 56.52 0.40 0.01 16 25 H 0.17 0.13 8.06 -52.48 -0.42 -0.30 16 26 H 0.41 -0.72 6.99 -40.82 -0.29 -1.00 16 27 H 0.10 0.07 7.76 -51.93 -0.40 -0.33 16 28 H 0.08 0.11 8.14 -51.93 -0.42 -0.31 16 29 H 0.07 -0.08 8.14 -51.93 -0.42 -0.50 16 30 H 0.07 -0.08 8.14 -51.93 -0.42 -0.50 16 31 H 0.08 -0.16 8.14 -51.93 -0.42 -0.58 16 32 H 0.07 -0.16 8.14 -51.93 -0.42 -0.58 16 33 H 0.07 -0.16 8.14 -51.93 -0.42 -0.58 16 34 H 0.09 -0.18 8.14 -51.93 -0.42 -0.60 16 35 H 0.07 -0.07 6.50 -51.93 -0.34 -0.41 16 36 H 0.08 -0.05 8.14 -51.93 -0.42 -0.47 16 37 H 0.38 -1.02 9.04 45.56 0.41 -0.61 16 38 H 0.07 -0.06 8.14 -51.93 -0.42 -0.48 16 39 H 0.07 -0.11 8.14 -51.93 -0.42 -0.53 16 40 H 0.06 -0.05 8.14 -51.93 -0.42 -0.47 16 41 H 0.07 0.02 7.60 -51.93 -0.39 -0.37 16 LS Contribution 323.02 15.07 4.87 4.87 Total: 0.00 -5.05 323.02 -11.97 -17.02 By element: Atomic # 1 Polarization: -4.04 SS G_CDS: -5.30 Total: -9.34 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: -2.74 Total: -1.50 kcal Atomic # 7 Polarization: -1.11 SS G_CDS: -0.40 Total: -1.51 kcal Atomic # 8 Polarization: -0.95 SS G_CDS: -0.91 Total: -1.86 kcal Atomic # 14 Polarization: -0.21 SS G_CDS: -5.28 Total: -5.49 kcal Atomic # 16 Polarization: 0.03 SS G_CDS: -2.21 Total: -2.19 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -5.05 -11.97 -17.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_27_17849788_15704118.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.850 kcal (2) G-P(sol) polarization free energy of solvation -5.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds