Wall clock time and date at job start Thu Mar 4 2021 15:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86298 * 109.47063 * 2 1 4 4 C 1.50698 * 109.47067 * 120.00044 * 2 1 3 5 5 C 1.33323 * 125.95671 * 64.97400 * 4 2 1 6 6 N 1.32116 * 114.58661 * 179.75265 * 5 4 2 7 7 C 1.29692 * 116.86274 * 0.47366 * 6 5 4 8 8 N 1.38609 * 124.95020 * 179.81115 * 7 6 5 9 9 C 1.46500 * 119.99891 * 359.70147 * 8 7 6 10 10 C 1.53002 * 109.46766 * 274.99617 * 9 8 7 11 11 C 1.52997 * 109.47092 * 180.02562 * 10 9 8 12 12 C 1.53006 * 109.47164 * 60.00174 * 11 10 9 13 13 C 1.52999 * 109.46623 * 299.99900 * 12 11 10 14 14 C 1.52997 * 109.46927 * 155.00146 * 9 8 7 15 15 C 1.52997 * 109.47457 * 59.99484 * 14 9 8 16 16 C 1.53002 * 109.46817 * 60.00169 * 15 14 9 17 17 O 1.42903 * 109.46923 * 179.97438 * 16 15 14 18 18 C 1.52997 * 109.47127 * 59.99836 * 12 11 10 19 19 C 1.52996 * 109.47346 * 299.99737 * 16 15 14 20 20 S 1.70968 * 110.09946 * 359.55101 * 7 6 5 21 21 H 0.96695 * 114.00087 * 299.99775 * 1 2 3 22 22 H 1.09001 * 109.46922 * 239.99804 * 2 1 3 23 23 H 1.48495 * 109.99915 * 299.99800 * 3 2 1 24 24 H 1.48497 * 109.99981 * 61.31897 * 3 2 1 25 25 H 1.08007 * 122.70579 * 0.02562 * 5 4 2 26 26 H 0.97001 * 119.99538 * 179.69989 * 8 7 6 27 27 H 1.09000 * 109.47381 * 34.99791 * 9 8 7 28 28 H 1.09002 * 109.47067 * 60.00243 * 10 9 8 29 29 H 1.09000 * 109.47140 * 300.00226 * 11 10 9 30 30 H 1.09001 * 109.47375 * 180.02562 * 11 10 9 31 31 H 1.08996 * 109.46884 * 180.02562 * 12 11 10 32 32 H 1.09000 * 109.47486 * 299.99829 * 13 12 11 33 33 H 1.09002 * 109.46716 * 179.97438 * 13 12 11 34 34 H 1.09001 * 109.46989 * 299.99155 * 14 9 8 35 35 H 1.08993 * 109.47194 * 299.99651 * 15 14 9 36 36 H 1.09002 * 109.46695 * 179.97438 * 15 14 9 37 37 H 0.96696 * 114.00096 * 179.97438 * 17 16 15 38 38 H 1.09002 * 109.47153 * 180.02562 * 18 12 11 39 39 H 1.09001 * 109.46832 * 60.00321 * 18 12 11 40 40 H 1.08992 * 109.47554 * 180.02562 * 19 16 15 41 41 H 1.09004 * 109.47108 * 300.00289 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 1.7618 -2.0024 1.5125 6 7 2.3019 -2.3914 2.6537 7 6 2.9114 -1.4847 3.3527 8 7 3.5315 -1.7061 4.5724 9 6 3.5228 -3.0453 5.1662 10 6 2.2269 -3.2450 5.9548 11 6 2.2180 -4.6434 6.5755 12 6 3.4156 -4.7915 7.5163 13 6 4.7113 -4.5918 6.7276 14 6 4.7202 -3.1939 6.1068 15 6 4.6311 -2.1436 7.2158 16 6 3.3353 -2.3434 8.0044 17 8 3.2523 -1.3629 9.0406 18 6 3.3262 -3.7408 8.6249 19 6 2.1378 -2.1948 7.0639 20 16 2.8448 0.0217 2.5469 21 1 -0.3933 0.4416 0.7650 22 1 1.7923 -0.5139 -0.8900 23 1 1.5615 2.4678 -1.2085 24 1 1.5879 2.4585 1.2242 25 1 1.2299 -2.6776 0.8584 26 1 3.9712 -0.9742 5.0328 27 1 3.5863 -3.7935 4.3761 28 1 1.3738 -3.1391 5.2847 29 1 2.2817 -5.3919 5.7857 30 1 1.2947 -4.7859 7.1370 31 1 3.4094 -5.7879 7.9581 32 1 4.7750 -5.3403 5.9378 33 1 5.5644 -4.6968 7.3979 34 1 5.6434 -3.0516 5.5450 35 1 4.6377 -1.1473 6.7740 36 1 5.4841 -2.2499 7.8861 37 1 2.4539 -1.4294 9.5821 38 1 4.1795 -3.8460 9.2949 39 1 2.4030 -3.8832 9.1867 40 1 1.2146 -2.3366 7.6257 41 1 2.1443 -1.1983 6.6221 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_27_17849788_15704118.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 15:31:19 Heat of formation + Delta-G solvation = -36.825689 kcal Electronic energy + Delta-G solvation = -24645.174740 eV Core-core repulsion = 21231.348003 eV Total energy + Delta-G solvation = -3413.826736 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 309.119 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.78331 -40.62922 -38.19140 -37.58794 -36.32129 -33.78137 -32.81807 -31.71403 -30.93946 -27.20465 -26.99490 -26.24294 -24.44483 -22.81150 -22.52785 -22.27749 -20.67577 -19.95136 -18.64539 -18.16495 -17.88100 -17.10677 -16.51500 -16.31184 -15.91403 -15.85519 -15.75170 -15.44613 -15.20734 -15.06444 -14.82815 -14.60894 -14.28281 -13.98608 -13.69848 -13.53617 -13.37354 -13.04510 -12.90835 -12.50114 -12.37160 -12.11010 -11.99532 -11.92502 -11.89568 -11.57789 -11.41437 -11.07997 -10.91561 -10.63996 -10.46280 -10.28304 -10.21380 -8.73570 -5.03809 -0.06023 0.02148 0.66922 1.24984 1.53236 1.87010 1.97300 2.14889 3.08865 3.38124 3.41057 3.44575 3.65579 3.79695 3.88445 3.92669 3.96429 4.09064 4.14556 4.17866 4.22094 4.26082 4.30356 4.56757 4.56978 4.63629 4.68691 4.70376 4.72222 4.88813 4.96689 4.98935 5.01205 5.04899 5.07957 5.11408 5.15742 5.29299 5.39005 5.40955 5.46886 5.85357 6.10683 6.42292 6.80779 6.99519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.542 6.542 2 C -0.021 4.021 3 Si 0.720 3.280 4 C -0.306 4.306 5 C 0.107 3.893 6 N -0.573 5.573 7 C 0.320 3.680 8 N -0.680 5.680 9 C 0.175 3.825 10 C -0.087 4.087 11 C -0.107 4.107 12 C -0.083 4.083 13 C -0.108 4.108 14 C -0.084 4.084 15 C -0.101 4.101 16 C 0.136 3.864 17 O -0.578 6.578 18 C -0.135 4.135 19 C -0.130 4.130 20 S 0.101 5.899 21 H 0.385 0.615 22 H 0.136 0.864 23 H -0.274 1.274 24 H -0.268 1.268 25 H 0.179 0.821 26 H 0.418 0.582 27 H 0.081 0.919 28 H 0.058 0.942 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.389 0.611 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.853 -0.943 2.317 3.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.351 6.351 2 C -0.134 4.134 3 Si 0.623 3.377 4 C -0.429 4.429 5 C -0.044 4.044 6 N -0.299 5.299 7 C -0.050 4.050 8 N -0.320 5.320 9 C 0.068 3.932 10 C -0.107 4.107 11 C -0.145 4.145 12 C -0.102 4.102 13 C -0.146 4.146 14 C -0.103 4.103 15 C -0.138 4.138 16 C 0.096 3.904 17 O -0.386 6.386 18 C -0.173 4.173 19 C -0.168 4.168 20 S 0.351 5.649 21 H 0.234 0.766 22 H 0.154 0.846 23 H -0.200 1.200 24 H -0.194 1.194 25 H 0.196 0.804 26 H 0.258 0.742 27 H 0.099 0.901 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.103 0.897 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.110 0.890 35 H 0.084 0.916 36 H 0.094 0.906 37 H 0.238 0.762 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.668 0.071 2.011 4.183 hybrid contribution -2.166 -0.563 0.364 2.267 sum 1.502 -0.491 2.375 2.852 Atomic orbital electron populations 1.86588 1.18264 1.80254 1.49945 1.24243 0.82946 1.10272 0.95903 0.94366 0.90818 0.73385 0.79134 1.25577 1.14997 0.98148 1.04141 1.21474 0.96990 0.93690 0.92284 1.66496 1.19765 1.34372 1.09297 1.23914 0.95373 0.93415 0.92333 1.44302 1.58401 1.12592 1.16703 1.20951 0.94635 0.83027 0.94538 1.21328 0.97745 0.95572 0.96085 1.21543 0.98567 0.95493 0.98868 1.21061 0.94735 0.99227 0.95138 1.21565 0.97897 0.95209 0.99894 1.21307 0.97787 0.96096 0.95084 1.21448 0.96672 0.98865 0.96846 1.21066 0.94905 0.87562 0.86837 1.86513 1.48244 1.56308 1.47543 1.22165 1.02843 0.94246 0.98048 1.22108 0.98498 0.99058 0.97152 1.83952 1.55197 1.10594 1.15185 0.76565 0.84631 1.19961 1.19356 0.80383 0.74170 0.90067 0.92336 0.91332 0.91398 0.89705 0.90686 0.90271 0.88950 0.91620 0.90642 0.76208 0.91163 0.91166 0.91489 0.92314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -1.60 12.88 -148.98 -1.92 -3.52 16 2 C -0.02 0.00 2.99 71.24 0.21 0.21 16 3 Si 0.72 -0.40 31.07 68.60 2.13 1.73 16 4 C -0.31 -0.59 5.73 24.57 0.14 -0.45 16 5 C 0.11 0.46 11.24 83.54 0.94 1.40 16 6 N -0.57 -3.57 9.90 -202.02 -2.00 -5.57 16 7 C 0.32 0.98 8.06 179.32 1.45 2.43 16 8 N -0.68 0.39 4.38 -330.40 -1.45 -1.06 16 9 C 0.18 -0.17 2.19 44.99 0.10 -0.07 16 10 C -0.09 0.03 2.89 -10.79 -0.03 0.00 16 11 C -0.11 0.24 5.19 30.60 0.16 0.40 16 12 C -0.08 0.33 3.20 -10.79 -0.03 0.30 16 13 C -0.11 0.50 5.19 30.58 0.16 0.65 16 14 C -0.08 0.32 2.88 -10.81 -0.03 0.29 16 15 C -0.10 0.24 4.67 30.59 0.14 0.38 16 16 C 0.14 -0.22 1.15 -10.83 -0.01 -0.24 16 17 O -0.58 -0.38 12.98 -148.98 -1.93 -2.32 16 18 C -0.14 0.43 4.81 30.56 0.15 0.57 16 19 C -0.13 0.12 4.66 30.59 0.14 0.26 16 20 S 0.10 0.07 20.59 -56.49 -1.16 -1.09 16 21 H 0.39 -0.76 8.70 -74.06 -0.64 -1.40 16 22 H 0.14 -0.29 7.96 -2.39 -0.02 -0.31 16 23 H -0.27 -1.49 7.11 99.48 0.71 -0.78 16 24 H -0.27 -0.91 7.11 99.48 0.71 -0.21 16 25 H 0.18 0.42 8.06 -2.91 -0.02 0.39 16 26 H 0.42 -1.37 6.99 -92.71 -0.65 -2.02 16 27 H 0.08 0.18 7.76 -2.39 -0.02 0.17 16 28 H 0.06 0.25 8.14 -2.39 -0.02 0.23 16 29 H 0.07 -0.12 8.14 -2.39 -0.02 -0.14 16 30 H 0.07 -0.16 8.14 -2.39 -0.02 -0.17 16 31 H 0.08 -0.41 8.14 -2.39 -0.02 -0.43 16 32 H 0.07 -0.37 8.14 -2.39 -0.02 -0.39 16 33 H 0.08 -0.43 8.14 -2.39 -0.02 -0.45 16 34 H 0.09 -0.44 8.14 -2.39 -0.02 -0.46 16 35 H 0.07 -0.16 6.50 -2.39 -0.02 -0.17 16 36 H 0.07 -0.12 8.14 -2.39 -0.02 -0.14 16 37 H 0.39 -2.15 9.04 -74.06 -0.67 -2.82 16 38 H 0.07 -0.16 8.14 -2.39 -0.02 -0.18 16 39 H 0.07 -0.27 8.14 -2.39 -0.02 -0.29 16 40 H 0.07 -0.08 8.14 -2.39 -0.02 -0.10 16 41 H 0.06 0.07 7.60 -2.38 -0.02 0.05 16 Total: 0.00 -11.61 323.02 -3.71 -15.32 By element: Atomic # 1 Polarization: -8.77 SS G_CDS: -0.86 Total: -9.63 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: 3.48 Total: 6.13 kcal Atomic # 7 Polarization: -3.18 SS G_CDS: -3.45 Total: -6.63 kcal Atomic # 8 Polarization: -1.98 SS G_CDS: -3.85 Total: -5.84 kcal Atomic # 14 Polarization: -0.40 SS G_CDS: 2.13 Total: 1.73 kcal Atomic # 16 Polarization: 0.07 SS G_CDS: -1.16 Total: -1.09 kcal Total: -11.61 -3.71 -15.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_27_17849788_15704118.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.504 kcal (2) G-P(sol) polarization free energy of solvation -11.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds