Wall clock time and date at job start Thu Mar 4 2021 13:08:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86304 * 1 3 3 C 1.86291 * 109.46929 * 2 1 4 4 C 1.86297 * 109.47268 * 239.99562 * 2 1 3 5 5 C 1.90004 * 109.46872 * 119.99570 * 2 1 3 6 6 C 3.07402 * 109.46831 * 119.99623 * 2 1 3 7 7 C 4.50604 * 109.46928 * 119.99630 * 2 1 3 8 8 C 1.33575 * 124.38451 * 170.38404 * 7 6 5 9 9 C 1.44693 * 114.56560 * 179.97438 * 8 7 6 10 10 C 1.41833 * 130.33354 * 180.02562 * 9 8 7 11 11 O 1.35429 * 120.51911 * 359.96498 * 10 9 8 12 12 C 1.35898 * 117.99800 * 174.95489 * 11 10 9 13 13 C 1.38719 * 120.05733 * 266.79267 * 12 11 10 14 14 C 1.38165 * 119.94189 * 180.02562 * 13 12 11 15 15 C 1.50699 * 119.96997 * 180.02562 * 14 13 12 16 16 O 1.42904 * 109.47437 * 65.00170 * 15 14 13 17 17 Si 1.86302 * 109.46992 * 185.00039 * 15 14 13 18 18 H 1.48499 * 109.47196 * 60.00384 * 17 15 14 19 19 H 1.48499 * 109.47148 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46971 * 299.99751 * 17 15 14 21 21 C 1.38242 * 120.05736 * 0.02562 * 14 13 12 22 22 C 1.38288 * 120.11719 * 359.97438 * 21 14 13 23 23 C 1.38123 * 120.05521 * 359.73072 * 22 21 14 24 24 N 1.48023 * 120.02940 * 180.27378 * 23 22 21 25 25 O 1.21795 * 120.00169 * 0.27526 * 24 23 22 26 26 O 1.21802 * 120.00207 * 180.27493 * 24 23 22 27 27 N 1.32300 * 118.95294 * 180.22967 * 10 9 8 28 28 C 1.32089 * 121.22540 * 359.44801 * 27 10 9 29 29 N 1.31324 * 122.20904 * 0.56718 * 28 27 10 30 30 C 1.33808 * 121.04120 * 359.72380 * 29 28 27 31 31 S 1.75338 * 124.39199 * 350.33819 * 7 6 5 32 32 H 1.08998 * 109.47205 * 300.00091 * 1 2 3 33 33 H 1.09004 * 109.46861 * 60.00798 * 1 2 3 34 34 H 1.09000 * 109.47036 * 180.02562 * 1 2 3 35 35 H 1.09005 * 109.47036 * 179.97438 * 3 2 1 36 36 H 1.09002 * 109.47158 * 299.99562 * 3 2 1 37 37 H 1.09004 * 109.47864 * 59.99608 * 3 2 1 38 38 H 1.09000 * 109.47319 * 300.00105 * 4 2 1 39 39 H 1.09002 * 109.47031 * 60.00308 * 4 2 1 40 40 H 1.09005 * 109.47062 * 179.97438 * 4 2 1 41 41 H 1.07994 * 122.72241 * 359.97438 * 8 7 6 42 42 H 1.08004 * 120.03042 * 359.97419 * 13 12 11 43 43 H 1.09003 * 109.47786 * 305.00068 * 15 14 13 44 44 H 0.96697 * 113.99773 * 59.99642 * 16 15 14 45 45 H 1.08002 * 119.94367 * 180.02562 * 21 14 13 46 46 H 1.08003 * 119.97683 * 180.02562 * 22 21 14 47 47 H 1.07993 * 118.89511 * 180.31314 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4841 -0.8783 -1.5210 5 6 2.4963 -0.8956 1.5515 6 6 2.8876 -1.4490 2.5101 7 6 3.3649 -2.1240 3.6793 8 6 4.5906 -1.9747 4.1890 9 6 4.8475 -2.7593 5.3773 10 6 6.0135 -2.8559 6.1791 11 8 7.1215 -2.1409 5.8707 12 6 8.1729 -2.1910 6.7303 13 6 8.3030 -1.2333 7.7254 14 6 9.3731 -1.2863 8.5977 15 6 9.5148 -0.2465 9.6793 16 8 8.4287 -0.3660 10.6003 17 14 11.1247 -0.5039 10.5810 18 1 12.2534 -0.3796 9.6241 19 1 11.2646 0.5210 11.6464 20 1 11.1394 -1.8578 11.1909 21 6 10.3140 -2.2922 8.4792 22 6 10.1866 -3.2481 7.4881 23 6 9.1154 -3.2033 6.6173 24 7 8.9763 -4.2304 5.5604 25 8 9.8040 -5.1184 5.4616 26 8 8.0342 -4.1875 4.7896 27 7 6.0032 -3.6596 7.2300 28 6 4.9283 -4.3589 7.5468 29 7 3.8243 -4.3053 6.8377 30 6 3.7378 -3.5259 5.7535 31 16 2.4160 -3.2525 4.6282 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5137 -0.8901 34 1 -0.3633 -1.0277 0.0005 35 1 3.5740 1.7564 0.0005 36 1 2.1207 2.2702 -0.8900 37 1 2.1206 2.2704 0.8899 38 1 2.1208 -1.9060 -1.5210 39 1 2.1208 -0.3645 -2.4111 40 1 3.5741 -0.8779 -1.5212 41 1 5.3299 -1.3214 3.7498 42 1 7.5689 -0.4465 7.8176 43 1 9.5040 0.7473 9.2318 44 1 8.3765 -1.2271 11.0372 45 1 11.1495 -2.3320 9.1623 46 1 10.9227 -4.0333 7.3978 47 1 4.9599 -4.9995 8.4157 RHF calculation, no. of doubly occupied orbitals= 72 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_27_2392266_17567452.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 13:08:09 Heat of formation + Delta-G solvation = 46.163247 kcal Electronic energy + Delta-G solvation = -35306.283766 eV Core-core repulsion = 30482.088556 eV Total energy + Delta-G solvation = -4824.195209 eV No. of doubly occupied orbitals = 72 Molecular weight (most abundant/longest-lived isotopes) = 429.082 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -43.46674 -42.56462 -41.43137 -39.99415 -37.92651 -37.75874 -37.46305 -34.51918 -33.98072 -33.62595 -32.25788 -30.45994 -29.63263 -28.95957 -28.48509 -28.47299 -26.75855 -25.96736 -25.77287 -24.48918 -23.23734 -22.90192 -21.21608 -20.67910 -20.07688 -19.70560 -18.79179 -18.59553 -18.23965 -17.87077 -17.44422 -17.07726 -16.92719 -16.63440 -16.50281 -16.22049 -15.90258 -15.65388 -15.57051 -15.30186 -14.84289 -14.33889 -14.28498 -14.24268 -14.11453 -14.08442 -14.04556 -13.85691 -13.49043 -13.37909 -13.35703 -13.15325 -12.72692 -12.63111 -12.55490 -12.46180 -12.37743 -12.28332 -12.15384 -12.12130 -12.08862 -12.04950 -11.62940 -11.43266 -11.01922 -10.91147 -10.79386 -10.77646 -10.69833 -10.59462 -9.86428 -9.18692 -1.49316 -0.94763 -0.66839 -0.31351 -0.22197 0.12607 0.24185 0.48139 0.59794 0.73643 1.13141 1.19863 1.21284 1.44084 1.51691 1.63027 1.64510 1.89472 2.28193 2.35747 2.41535 2.61007 2.62565 2.88461 2.91666 3.02031 3.11168 3.22886 3.27248 3.40248 3.47695 3.57351 3.84168 4.08776 4.10219 4.25104 4.26934 4.28238 4.50842 4.65082 4.65459 4.67436 4.69303 4.69766 4.70708 4.71026 4.72318 4.83268 4.87806 5.26910 5.39522 5.41753 5.48636 5.50146 5.78314 6.14975 6.50525 6.59992 6.75274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.453 4.453 2 Si 1.146 2.854 3 C -0.453 4.453 4 C -0.453 4.453 5 C -0.354 4.354 6 C -0.127 4.127 7 C -0.082 4.082 8 C -0.059 4.059 9 C -0.176 4.176 10 C 0.433 3.567 11 O -0.224 6.224 12 C 0.158 3.842 13 C -0.087 4.087 14 C -0.056 4.056 15 C -0.090 4.090 16 O -0.530 6.530 17 Si 0.947 3.053 18 H -0.243 1.243 19 H -0.243 1.243 20 H -0.245 1.245 21 C -0.118 4.118 22 C -0.035 4.035 23 C -0.037 4.037 24 N 0.030 4.970 25 O -0.148 6.148 26 O -0.149 6.149 27 N -0.578 5.578 28 C 0.358 3.642 29 N -0.500 5.500 30 C 0.108 3.892 31 S 0.226 5.774 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.078 0.922 40 H 0.073 0.927 41 H 0.161 0.839 42 H 0.159 0.841 43 H 0.131 0.869 44 H 0.381 0.619 45 H 0.151 0.849 46 H 0.167 0.833 47 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.120 4.636 1.783 5.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.561 4.561 2 Si 1.331 2.669 3 C -0.561 4.561 4 C -0.561 4.561 5 C -0.392 4.392 6 C -0.129 4.129 7 C -0.197 4.197 8 C -0.089 4.089 9 C -0.190 4.190 10 C 0.240 3.760 11 O -0.126 6.126 12 C 0.114 3.886 13 C -0.106 4.106 14 C -0.056 4.056 15 C -0.200 4.200 16 O -0.335 6.335 17 Si 0.767 3.233 18 H -0.167 1.167 19 H -0.167 1.167 20 H -0.168 1.168 21 C -0.136 4.136 22 C -0.054 4.054 23 C -0.121 4.121 24 N 0.551 4.449 25 O -0.365 6.365 26 O -0.366 6.366 27 N -0.309 5.309 28 C 0.067 3.933 29 N -0.220 5.220 30 C -0.143 4.143 31 S 0.491 5.509 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.097 0.903 40 H 0.092 0.908 41 H 0.178 0.822 42 H 0.177 0.823 43 H 0.148 0.852 44 H 0.229 0.771 45 H 0.169 0.831 46 H 0.185 0.815 47 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 0.437 4.576 3.077 5.532 hybrid contribution 1.401 -0.124 -0.517 1.498 sum 1.837 4.452 2.560 5.454 Atomic orbital electron populations 1.26116 1.19775 1.05108 1.05081 0.77074 0.66095 0.64667 0.59030 1.26117 1.06783 1.18111 1.05057 1.26122 1.06825 1.08515 1.14657 1.36288 0.98536 1.00311 1.04057 1.19498 1.00643 0.98901 0.93873 1.19532 0.97410 1.04150 0.98641 1.20852 0.96028 0.99007 0.93053 1.19428 0.93568 1.05638 1.00405 1.19765 0.83320 0.85368 0.87528 1.84626 1.20336 1.63342 1.44287 1.18215 0.86281 0.93213 0.90865 1.21221 0.99415 0.98956 0.91008 1.20722 0.93051 0.95760 0.96105 1.25228 1.02570 1.00672 0.91522 1.86587 1.49674 1.39633 1.57594 0.85697 0.74777 0.82006 0.80808 1.16668 1.16668 1.16816 1.21238 0.99920 0.93957 0.98491 1.20993 0.94954 0.98759 0.90666 1.21503 1.02010 0.92709 0.95903 1.43359 0.99992 1.00805 1.00759 1.94562 1.37108 1.27557 1.77305 1.94605 1.23238 1.80741 1.37984 1.67948 1.32480 1.12044 1.18460 1.24724 0.80979 0.91502 0.96131 1.68081 1.28014 1.20366 1.05531 1.23966 0.97294 0.95409 0.97585 1.84548 1.09160 1.40647 1.16557 0.90817 0.90239 0.90790 0.90821 0.90264 0.90834 0.90780 0.90281 0.90793 0.82171 0.82304 0.85175 0.77133 0.83137 0.81518 0.77135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 1.15 8.65 101.05 0.87 2.02 16 2 Si 1.15 -3.52 14.26 -169.99 -2.42 -5.95 16 3 C -0.45 1.15 8.65 101.05 0.87 2.03 16 4 C -0.45 1.05 8.65 101.05 0.87 1.93 16 5 C -0.35 -0.43 12.14 29.55 0.36 -0.07 16 6 C -0.13 -0.41 13.64 -38.84 -0.53 -0.94 16 7 C -0.08 -0.27 6.15 -39.29 -0.24 -0.52 16 8 C -0.06 -0.19 10.19 -38.67 -0.39 -0.58 16 9 C -0.18 -0.71 6.08 -105.30 -0.64 -1.35 16 10 C 0.43 1.72 6.22 -15.98 -0.10 1.62 16 11 O -0.22 -0.76 8.52 -24.28 -0.21 -0.97 16 12 C 0.16 0.29 4.98 -39.21 -0.20 0.09 16 13 C -0.09 0.07 9.62 -39.43 -0.38 -0.31 16 14 C -0.06 0.14 5.35 -104.65 -0.56 -0.42 16 15 C -0.09 0.33 2.80 36.01 0.10 0.43 16 16 O -0.53 1.35 12.83 -35.23 -0.45 0.90 16 17 Si 0.95 -3.55 25.14 -169.99 -4.27 -7.82 16 18 H -0.24 0.81 7.11 56.52 0.40 1.21 16 19 H -0.24 0.46 7.11 56.52 0.40 0.86 16 20 H -0.24 0.94 7.04 56.52 0.40 1.34 16 21 C -0.12 0.33 8.67 -39.56 -0.34 -0.01 16 22 C -0.03 0.03 9.55 -39.61 -0.38 -0.35 16 23 C -0.04 -0.08 6.87 -79.79 -0.55 -0.63 16 24 N 0.03 0.15 4.45 34.04 0.15 0.30 16 25 O -0.15 -0.81 18.45 -29.46 -0.54 -1.35 16 26 O -0.15 -1.03 16.21 -36.49 -0.59 -1.62 16 27 N -0.58 -1.92 9.42 -14.16 -0.13 -2.06 16 28 C 0.36 0.80 12.26 -92.30 -1.13 -0.34 16 29 N -0.50 -1.95 10.47 -13.26 -0.14 -2.09 16 30 C 0.11 0.44 7.69 -16.02 -0.12 0.32 16 31 S 0.23 0.62 23.16 -107.50 -2.49 -1.87 16 32 H 0.07 -0.16 7.96 -51.93 -0.41 -0.58 16 33 H 0.08 -0.26 7.96 -51.93 -0.41 -0.67 16 34 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 35 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 36 H 0.08 -0.25 7.96 -51.93 -0.41 -0.67 16 37 H 0.07 -0.16 7.96 -51.93 -0.41 -0.58 16 38 H 0.07 -0.14 7.96 -51.93 -0.41 -0.56 16 39 H 0.08 -0.24 7.96 -51.93 -0.41 -0.65 16 40 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 41 H 0.16 0.26 8.06 -52.49 -0.42 -0.16 16 42 H 0.16 -0.28 8.06 -52.48 -0.42 -0.70 16 43 H 0.13 -0.61 7.96 -51.93 -0.41 -1.03 16 44 H 0.38 -2.15 8.70 45.56 0.40 -1.75 16 45 H 0.15 -0.75 4.86 -52.49 -0.25 -1.00 16 46 H 0.17 -0.42 7.61 -52.48 -0.40 -0.82 16 47 H 0.21 -0.35 8.06 -52.49 -0.42 -0.77 16 LS Contribution 437.31 15.07 6.59 6.59 Total: 0.00 -9.79 437.31 -11.45 -21.24 By element: Atomic # 1 Polarization: -3.77 SS G_CDS: -4.46 Total: -8.23 kcal Atomic # 6 Polarization: 5.41 SS G_CDS: -2.48 Total: 2.93 kcal Atomic # 7 Polarization: -3.72 SS G_CDS: -0.12 Total: -3.85 kcal Atomic # 8 Polarization: -1.25 SS G_CDS: -1.79 Total: -3.04 kcal Atomic # 14 Polarization: -7.07 SS G_CDS: -6.70 Total: -13.77 kcal Atomic # 16 Polarization: 0.62 SS G_CDS: -2.49 Total: -1.87 kcal Total LS contribution 6.59 Total: 6.59 kcal Total: -9.79 -11.45 -21.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_27_2392266_17567452.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.402 kcal (2) G-P(sol) polarization free energy of solvation -9.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds