Wall clock time and date at job start Thu Mar 4 2021 13:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86304 * 1 3 3 C 1.86291 * 109.46929 * 2 1 4 4 C 1.86297 * 109.47268 * 239.99562 * 2 1 3 5 5 C 1.90004 * 109.46872 * 119.99570 * 2 1 3 6 6 C 3.07402 * 109.46831 * 119.99623 * 2 1 3 7 7 C 4.50604 * 109.46928 * 119.99630 * 2 1 3 8 8 C 1.33575 * 124.38451 * 170.38404 * 7 6 5 9 9 C 1.44693 * 114.56560 * 179.97438 * 8 7 6 10 10 C 1.41833 * 130.33354 * 180.02562 * 9 8 7 11 11 O 1.35429 * 120.51911 * 359.96498 * 10 9 8 12 12 C 1.35898 * 117.99800 * 174.95489 * 11 10 9 13 13 C 1.38719 * 120.05733 * 266.79267 * 12 11 10 14 14 C 1.38165 * 119.94189 * 180.02562 * 13 12 11 15 15 C 1.50699 * 119.96997 * 180.02562 * 14 13 12 16 16 O 1.42904 * 109.47437 * 65.00170 * 15 14 13 17 17 Si 1.86302 * 109.46992 * 185.00039 * 15 14 13 18 18 H 1.48499 * 109.47196 * 60.00384 * 17 15 14 19 19 H 1.48499 * 109.47148 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46971 * 299.99751 * 17 15 14 21 21 C 1.38242 * 120.05736 * 0.02562 * 14 13 12 22 22 C 1.38288 * 120.11719 * 359.97438 * 21 14 13 23 23 C 1.38123 * 120.05521 * 359.73072 * 22 21 14 24 24 N 1.48023 * 120.02940 * 180.27378 * 23 22 21 25 25 O 1.21795 * 120.00169 * 0.27526 * 24 23 22 26 26 O 1.21802 * 120.00207 * 180.27493 * 24 23 22 27 27 N 1.32300 * 118.95294 * 180.22967 * 10 9 8 28 28 C 1.32089 * 121.22540 * 359.44801 * 27 10 9 29 29 N 1.31324 * 122.20904 * 0.56718 * 28 27 10 30 30 C 1.33808 * 121.04120 * 359.72380 * 29 28 27 31 31 S 1.75338 * 124.39199 * 350.33819 * 7 6 5 32 32 H 1.08998 * 109.47205 * 300.00091 * 1 2 3 33 33 H 1.09004 * 109.46861 * 60.00798 * 1 2 3 34 34 H 1.09000 * 109.47036 * 180.02562 * 1 2 3 35 35 H 1.09005 * 109.47036 * 179.97438 * 3 2 1 36 36 H 1.09002 * 109.47158 * 299.99562 * 3 2 1 37 37 H 1.09004 * 109.47864 * 59.99608 * 3 2 1 38 38 H 1.09000 * 109.47319 * 300.00105 * 4 2 1 39 39 H 1.09002 * 109.47031 * 60.00308 * 4 2 1 40 40 H 1.09005 * 109.47062 * 179.97438 * 4 2 1 41 41 H 1.07994 * 122.72241 * 359.97438 * 8 7 6 42 42 H 1.08004 * 120.03042 * 359.97419 * 13 12 11 43 43 H 1.09003 * 109.47786 * 305.00068 * 15 14 13 44 44 H 0.96697 * 113.99773 * 59.99642 * 16 15 14 45 45 H 1.08002 * 119.94367 * 180.02562 * 21 14 13 46 46 H 1.08003 * 119.97683 * 180.02562 * 22 21 14 47 47 H 1.07993 * 118.89511 * 180.31314 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4841 -0.8783 -1.5210 5 6 2.4963 -0.8956 1.5515 6 6 2.8876 -1.4490 2.5101 7 6 3.3649 -2.1240 3.6793 8 6 4.5906 -1.9747 4.1890 9 6 4.8475 -2.7593 5.3773 10 6 6.0135 -2.8559 6.1791 11 8 7.1215 -2.1409 5.8707 12 6 8.1729 -2.1910 6.7303 13 6 8.3030 -1.2333 7.7254 14 6 9.3731 -1.2863 8.5977 15 6 9.5148 -0.2465 9.6793 16 8 8.4287 -0.3660 10.6003 17 14 11.1247 -0.5039 10.5810 18 1 12.2534 -0.3796 9.6241 19 1 11.2646 0.5210 11.6464 20 1 11.1394 -1.8578 11.1909 21 6 10.3140 -2.2922 8.4792 22 6 10.1866 -3.2481 7.4881 23 6 9.1154 -3.2033 6.6173 24 7 8.9763 -4.2304 5.5604 25 8 9.8040 -5.1184 5.4616 26 8 8.0342 -4.1875 4.7896 27 7 6.0032 -3.6596 7.2300 28 6 4.9283 -4.3589 7.5468 29 7 3.8243 -4.3053 6.8377 30 6 3.7378 -3.5259 5.7535 31 16 2.4160 -3.2525 4.6282 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5137 -0.8901 34 1 -0.3633 -1.0277 0.0005 35 1 3.5740 1.7564 0.0005 36 1 2.1207 2.2702 -0.8900 37 1 2.1206 2.2704 0.8899 38 1 2.1208 -1.9060 -1.5210 39 1 2.1208 -0.3645 -2.4111 40 1 3.5741 -0.8779 -1.5212 41 1 5.3299 -1.3214 3.7498 42 1 7.5689 -0.4465 7.8176 43 1 9.5040 0.7473 9.2318 44 1 8.3765 -1.2271 11.0372 45 1 11.1495 -2.3320 9.1623 46 1 10.9227 -4.0333 7.3978 47 1 4.9599 -4.9995 8.4157 RHF calculation, no. of doubly occupied orbitals= 72 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_27_2392266_17567452.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 13:08:08 Heat of formation + Delta-G solvation = 52.321057 kcal Electronic energy + Delta-G solvation = -35306.016743 eV Core-core repulsion = 30482.088556 eV Total energy + Delta-G solvation = -4823.928187 eV No. of doubly occupied orbitals = 72 Molecular weight (most abundant/longest-lived isotopes) = 429.082 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -43.68495 -42.78929 -41.51937 -40.02554 -37.96272 -37.88445 -37.66692 -34.71419 -34.12490 -33.62431 -32.25799 -30.63030 -29.43357 -29.00933 -28.26828 -28.26444 -26.92373 -26.13101 -25.82160 -24.50805 -23.31107 -23.06380 -21.37978 -20.86481 -20.21769 -19.92057 -18.86562 -18.64726 -18.39874 -17.93704 -17.61774 -17.12898 -17.09136 -16.59068 -16.43691 -16.11493 -15.89724 -15.65645 -15.48658 -15.37969 -14.85824 -14.47340 -14.26777 -14.10966 -14.07114 -14.00469 -13.86425 -13.80580 -13.40456 -13.15017 -13.14108 -12.96159 -12.95380 -12.83672 -12.64679 -12.51463 -12.50990 -12.43551 -12.28023 -12.15418 -12.12260 -11.83303 -11.72035 -11.56995 -10.93771 -10.88467 -10.80345 -10.66274 -10.60916 -10.56275 -10.06319 -9.40172 -1.65324 -1.15369 -0.63050 -0.56053 -0.42488 -0.06783 0.06850 0.27316 0.40123 0.99172 1.17200 1.45067 1.45624 1.51139 1.61280 1.71387 1.90501 1.94409 2.22115 2.37079 2.45506 2.49802 2.54705 2.84632 2.95517 3.04242 3.07374 3.18552 3.36056 3.37276 3.57221 3.61042 3.72423 4.08130 4.21130 4.27171 4.36316 4.46491 4.47137 4.59609 4.62093 4.69860 4.86038 4.86291 4.86292 4.89225 4.91844 4.92090 4.94463 5.03898 5.22384 5.61503 5.62274 5.70924 5.71426 6.20738 6.33813 6.54818 6.57218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.462 4.462 2 Si 1.207 2.793 3 C -0.462 4.462 4 C -0.465 4.465 5 C -0.339 4.339 6 C -0.179 4.179 7 C -0.088 4.088 8 C -0.066 4.066 9 C -0.191 4.191 10 C 0.428 3.572 11 O -0.233 6.233 12 C 0.137 3.863 13 C -0.085 4.085 14 C -0.039 4.039 15 C -0.089 4.089 16 O -0.545 6.545 17 Si 0.976 3.024 18 H -0.243 1.243 19 H -0.272 1.272 20 H -0.235 1.235 21 C -0.105 4.105 22 C -0.028 4.028 23 C -0.057 4.057 24 N 0.033 4.967 25 O -0.149 6.149 26 O -0.202 6.202 27 N -0.582 5.582 28 C 0.356 3.644 29 N -0.517 5.517 30 C 0.093 3.907 31 S 0.237 5.763 32 H 0.071 0.929 33 H 0.090 0.910 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.090 0.910 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.090 0.910 40 H 0.068 0.932 41 H 0.167 0.833 42 H 0.166 0.834 43 H 0.142 0.858 44 H 0.394 0.606 45 H 0.180 0.820 46 H 0.185 0.815 47 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.990 5.494 2.675 6.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.570 4.570 2 Si 1.388 2.612 3 C -0.570 4.570 4 C -0.572 4.572 5 C -0.374 4.374 6 C -0.181 4.181 7 C -0.204 4.204 8 C -0.096 4.096 9 C -0.206 4.206 10 C 0.235 3.765 11 O -0.135 6.135 12 C 0.093 3.907 13 C -0.104 4.104 14 C -0.040 4.040 15 C -0.198 4.198 16 O -0.353 6.353 17 Si 0.798 3.202 18 H -0.167 1.167 19 H -0.197 1.197 20 H -0.158 1.158 21 C -0.123 4.123 22 C -0.047 4.047 23 C -0.142 4.142 24 N 0.548 4.452 25 O -0.370 6.370 26 O -0.408 6.408 27 N -0.314 5.314 28 C 0.065 3.935 29 N -0.237 5.237 30 C -0.157 4.157 31 S 0.502 5.498 32 H 0.090 0.910 33 H 0.109 0.891 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.109 0.891 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.109 0.891 40 H 0.088 0.912 41 H 0.184 0.816 42 H 0.183 0.817 43 H 0.159 0.841 44 H 0.244 0.756 45 H 0.197 0.803 46 H 0.202 0.798 47 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges 1.255 5.416 3.944 6.817 hybrid contribution 1.233 -0.303 -0.693 1.446 sum 2.488 5.114 3.252 6.551 Atomic orbital electron populations 1.26219 1.20109 1.05096 1.05577 0.76335 0.65056 0.63306 0.56471 1.26219 1.06676 1.18543 1.05543 1.26257 1.06648 1.08601 1.15725 1.37781 0.96809 0.98840 1.03960 1.19940 1.02562 1.00634 0.94943 1.19688 0.97548 1.04222 0.98926 1.20943 0.96296 0.99314 0.93086 1.19580 0.93947 1.06148 1.00897 1.19920 0.83517 0.85452 0.87626 1.84605 1.20605 1.63172 1.45124 1.18528 0.86027 0.94256 0.91870 1.21354 1.00204 0.98394 0.90469 1.20953 0.91997 0.95692 0.95381 1.25373 1.02658 1.00831 0.90981 1.86570 1.50054 1.40889 1.57766 0.85287 0.73977 0.81431 0.79528 1.16679 1.19735 1.15833 1.21554 1.00233 0.92654 0.97815 1.21320 0.94080 0.99424 0.89875 1.21703 1.03799 0.92510 0.96148 1.43751 0.99325 1.01077 1.01045 1.94512 1.36806 1.28277 1.77383 1.94604 1.24357 1.81873 1.39984 1.68019 1.32777 1.12164 1.18409 1.25474 0.80265 0.91181 0.96535 1.68132 1.28865 1.20826 1.05845 1.24191 0.97778 0.95710 0.98035 1.84341 1.08814 1.40479 1.16160 0.91009 0.89073 0.91089 0.91146 0.89107 0.91033 0.91185 0.89101 0.91240 0.81551 0.81650 0.84081 0.75629 0.80269 0.79796 0.73749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.61 8.65 113.37 0.98 3.59 16 2 Si 1.21 -7.73 14.26 68.60 0.98 -6.75 16 3 C -0.46 2.59 8.65 113.37 0.98 3.57 16 4 C -0.46 2.29 8.65 113.37 0.98 3.27 16 5 C -0.34 -1.17 12.14 74.32 0.90 -0.27 16 6 C -0.18 -1.52 13.64 30.02 0.41 -1.11 16 7 C -0.09 -0.82 6.15 22.46 0.14 -0.68 16 8 C -0.07 -0.61 10.19 22.86 0.23 -0.38 16 9 C -0.19 -2.06 6.08 -20.31 -0.12 -2.19 16 10 C 0.43 4.37 6.22 85.51 0.53 4.90 16 11 O -0.23 -2.13 8.52 -9.52 -0.08 -2.21 16 12 C 0.14 0.63 4.98 22.51 0.11 0.75 16 13 C -0.09 0.15 9.62 22.37 0.22 0.36 16 14 C -0.04 0.26 5.35 -19.88 -0.11 0.15 16 15 C -0.09 0.81 2.80 71.24 0.20 1.01 16 16 O -0.55 3.55 12.83 -148.98 -1.91 1.64 16 17 Si 0.98 -9.28 25.14 68.60 1.72 -7.56 16 18 H -0.24 2.24 7.11 99.48 0.71 2.94 16 19 H -0.27 1.18 7.11 99.48 0.71 1.89 16 20 H -0.24 2.54 7.04 99.48 0.70 3.24 16 21 C -0.10 0.81 8.67 22.28 0.19 1.00 16 22 C -0.03 0.08 9.55 22.25 0.21 0.30 16 23 C -0.06 -0.29 6.87 36.48 0.25 -0.04 16 24 N 0.03 0.40 4.45 -46.22 -0.21 0.19 16 25 O -0.15 -1.80 18.45 18.89 0.35 -1.45 16 26 O -0.20 -3.41 16.21 25.60 0.41 -2.99 16 27 N -0.58 -4.70 9.42 -311.70 -2.94 -7.64 16 28 C 0.36 1.94 12.26 180.94 2.22 4.16 16 29 N -0.52 -4.86 10.47 -195.88 -2.05 -6.91 16 30 C 0.09 0.98 7.69 84.83 0.65 1.63 16 31 S 0.24 1.84 23.16 -56.49 -1.31 0.53 16 32 H 0.07 -0.35 7.96 -2.39 -0.02 -0.37 16 33 H 0.09 -0.70 7.96 -2.39 -0.02 -0.72 16 34 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 35 H 0.07 -0.32 7.96 -2.38 -0.02 -0.34 16 36 H 0.09 -0.69 7.96 -2.39 -0.02 -0.71 16 37 H 0.07 -0.34 7.96 -2.38 -0.02 -0.36 16 38 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 39 H 0.09 -0.64 7.96 -2.39 -0.02 -0.66 16 40 H 0.07 -0.25 7.96 -2.38 -0.02 -0.27 16 41 H 0.17 1.08 8.06 -2.91 -0.02 1.06 16 42 H 0.17 -0.56 8.06 -2.91 -0.02 -0.58 16 43 H 0.14 -1.57 7.96 -2.39 -0.02 -1.59 16 44 H 0.39 -5.08 8.70 -74.06 -0.64 -5.72 16 45 H 0.18 -2.40 4.86 -2.91 -0.01 -2.42 16 46 H 0.18 -1.22 7.61 -2.91 -0.02 -1.25 16 47 H 0.25 -0.85 8.06 -2.91 -0.02 -0.87 16 Total: 0.00 -25.60 437.31 5.13 -20.48 By element: Atomic # 1 Polarization: -8.53 SS G_CDS: 1.17 Total: -7.36 kcal Atomic # 6 Polarization: 11.04 SS G_CDS: 8.98 Total: 20.02 kcal Atomic # 7 Polarization: -9.16 SS G_CDS: -5.19 Total: -14.36 kcal Atomic # 8 Polarization: -3.78 SS G_CDS: -1.23 Total: -5.01 kcal Atomic # 14 Polarization: -17.01 SS G_CDS: 2.70 Total: -14.31 kcal Atomic # 16 Polarization: 1.84 SS G_CDS: -1.31 Total: 0.53 kcal Total: -25.60 5.13 -20.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_27_2392266_17567452.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.797 kcal (2) G-P(sol) polarization free energy of solvation -25.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds