Wall clock time and date at job start Fri Mar 5 2021 01:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.39516 * 120.13946 * 292.56713 * 3 2 1 5 5 C 1.37999 * 119.85456 * 180.02562 * 4 3 2 6 6 C 1.50692 * 119.92881 * 179.97438 * 5 4 3 7 7 O 1.42906 * 109.47279 * 245.02481 * 6 5 4 8 8 Si 1.86303 * 109.47508 * 5.02424 * 6 5 4 9 9 H 1.48501 * 109.47028 * 59.99814 * 8 6 5 10 10 H 1.48496 * 109.47712 * 180.02562 * 8 6 5 11 11 H 1.48510 * 109.46718 * 300.00359 * 8 6 5 12 12 C 1.38326 * 120.13941 * 0.02562 * 5 4 3 13 13 C 1.38357 * 120.28879 * 0.02562 * 12 5 4 14 14 C 1.50703 * 119.92796 * 179.97438 * 13 12 5 15 15 N 1.46906 * 109.47109 * 90.00009 * 14 13 12 16 16 C 1.46851 * 111.00022 * 45.78950 * 15 14 13 17 17 C 1.53032 * 109.52182 * 185.84191 * 16 15 14 18 18 N 1.46504 * 109.53720 * 60.78003 * 17 16 15 19 19 C 1.34774 * 119.99691 * 155.17812 * 18 17 16 20 20 O 1.21614 * 120.00560 * 0.02562 * 19 18 17 21 21 C 1.43202 * 119.99892 * 180.02562 * 19 18 17 22 22 C 9.08232 * 135.74529 * 24.32651 * 2 1 3 23 23 C 9.17271 * 131.51750 * 196.20991 * 3 1 2 24 24 C 1.53001 * 117.49682 * 217.44081 * 23 22 21 25 25 C 1.53001 * 117.49333 * 148.78685 * 23 22 21 26 26 C 1.53116 * 109.27928 * 300.81716 * 17 16 15 27 27 C 1.53124 * 109.15766 * 57.65616 * 26 17 16 28 28 C 1.46844 * 111.00112 * 169.99735 * 15 14 13 29 29 C 1.53006 * 109.46123 * 54.14333 * 28 15 14 30 30 C 1.37948 * 120.14404 * 0.24732 * 13 12 5 31 31 H 4.52049 * 14.02078 * 359.97438 * 4 2 1 32 32 H 1.07995 * 120.07649 * 0.02562 * 4 3 2 33 33 H 1.08998 * 109.47576 * 125.02445 * 6 5 4 34 34 H 0.96697 * 113.99619 * 59.99994 * 7 6 5 35 35 H 1.08002 * 119.85412 * 179.97438 * 12 5 4 36 36 H 1.08992 * 109.46894 * 329.99744 * 14 13 12 37 37 H 1.09004 * 109.47113 * 209.99895 * 14 13 12 38 38 H 1.09005 * 109.46004 * 305.85371 * 16 15 14 39 39 H 1.08992 * 109.46301 * 65.82351 * 16 15 14 40 40 H 1.09001 * 109.50447 * 180.88041 * 17 16 15 41 41 H 0.96999 * 119.99961 * 335.17828 * 18 17 16 42 42 H 1.09000 * 115.55015 * 3.11681 * 23 22 21 43 43 H 1.08997 * 117.49959 * 0.02562 * 24 23 22 44 44 H 1.09004 * 117.49433 * 145.02139 * 24 23 22 45 45 H 1.09005 * 117.49395 * 214.98060 * 25 23 22 46 46 H 1.09001 * 117.50534 * 359.97438 * 25 23 22 47 47 H 1.08999 * 109.52527 * 297.75337 * 26 17 16 48 48 H 1.08998 * 109.52598 * 177.56176 * 26 17 16 49 49 H 1.09006 * 109.50478 * 182.40666 * 27 26 17 50 50 H 1.09001 * 109.50373 * 62.28837 * 27 26 17 51 51 H 1.08998 * 109.46222 * 294.16627 * 28 15 14 52 52 H 1.09003 * 109.46774 * 59.99876 * 29 28 15 53 53 H 1.08999 * 109.47248 * 179.97438 * 29 28 15 54 54 H 1.09000 * 109.47081 * 299.99984 * 29 28 15 55 55 H 1.08002 * 120.07492 * 179.70610 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3067 -0.4621 1.1142 5 6 4.6867 -0.4583 1.1080 6 6 5.4452 -0.9572 2.3108 7 8 6.1756 0.1232 2.8951 8 14 4.2461 -1.6438 3.5604 9 1 3.4872 -2.7665 2.9532 10 1 4.9935 -2.1349 4.7459 11 1 3.3017 -0.5767 3.9784 12 6 5.3751 0.0034 0.0006 13 6 4.6861 0.4645 -1.1070 14 6 5.4442 0.9663 -2.3089 15 7 5.6917 -0.1491 -3.2324 16 6 4.4779 -0.9532 -3.4237 17 6 4.8080 -2.1837 -4.2715 18 7 5.8103 -2.9996 -3.5815 19 6 5.8992 -4.3192 -3.8405 20 8 5.1478 -4.8327 -4.6472 21 6 6.8785 -5.1169 -3.1657 22 6 7.6792 -5.7753 -2.6109 23 6 8.6845 6.5972 1.9173 24 6 10.0872 7.1252 2.2246 25 6 9.1298 6.7840 3.3691 26 6 5.3613 -1.7311 -5.6255 27 6 6.5965 -0.8556 -5.3963 28 6 6.2146 0.3364 -4.5159 29 6 7.4506 1.2035 -4.2676 30 6 3.3066 0.4713 -1.1114 31 1 -1.0500 0.0003 0.0005 32 1 2.7704 -0.8224 1.9795 33 1 6.1384 -1.7404 2.0040 34 1 5.6211 0.8577 3.1920 35 1 6.4551 0.0046 0.0009 36 1 6.3957 1.3898 -1.9874 37 1 4.8575 1.7332 -2.8145 38 1 4.0971 -1.2723 -2.4534 39 1 3.7219 -0.3545 -3.9314 40 1 3.9036 -2.7722 -4.4264 41 1 6.4098 -2.5900 -2.9384 42 1 7.9566 7.3041 1.5191 43 1 10.9271 6.4521 2.0528 44 1 10.2821 8.1796 2.0289 45 1 8.6951 7.6142 3.9259 46 1 9.3394 5.8863 3.9508 47 1 4.6015 -1.1572 -6.1561 48 1 5.6382 -2.6042 -6.2162 49 1 6.9700 -0.4951 -6.3548 50 1 7.3706 -1.4411 -4.9004 51 1 5.4503 0.9290 -5.0186 52 1 8.2148 0.6111 -3.7644 53 1 7.8391 1.5636 -5.2202 54 1 7.1785 2.0531 -3.6412 55 1 2.7699 0.8360 -1.9748 RHF calculation, no. of doubly occupied orbitals= 71 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_275030_14113506_12659064_16591380.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 01:00:41 Heat of formation + Delta-G solvation = 251.104874 kcal Electronic energy + Delta-G solvation = -34032.300415 eV Core-core repulsion = 29704.171500 eV Total energy + Delta-G solvation = -4328.128916 eV No. of doubly occupied orbitals = 71 Molecular weight (most abundant/longest-lived isotopes) = 380.201 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -41.61811 -40.73209 -39.53792 -38.38293 -37.79214 -36.18416 -35.06973 -34.31079 -32.84290 -32.26250 -31.42394 -31.28819 -28.26222 -27.11960 -26.92179 -24.87140 -24.03535 -23.87181 -23.84801 -22.83107 -22.30178 -21.60349 -20.35896 -19.67723 -19.58089 -18.10662 -17.47306 -17.30349 -17.13434 -16.91170 -16.80597 -16.47738 -16.11864 -16.10700 -15.96918 -15.55166 -15.45637 -15.42091 -15.14375 -14.85679 -14.65132 -14.53671 -14.06407 -13.92607 -13.83828 -13.34045 -13.05421 -12.93248 -12.92097 -12.84173 -12.64691 -12.63145 -12.48517 -12.40486 -12.32242 -12.26278 -12.09386 -11.91239 -11.80002 -11.75054 -11.71493 -11.49302 -11.29696 -10.60015 -10.48341 -10.45313 -10.05199 -9.90053 -9.59988 -9.57761 -9.26642 -2.83958 -0.15971 0.08495 1.08161 1.29543 1.38048 1.43470 1.65589 1.74202 1.84643 1.87077 2.28001 2.32470 2.65783 2.67043 2.99947 3.19773 3.27760 3.44461 3.45468 3.52703 3.56273 3.62211 3.66697 3.76685 3.86127 3.89382 4.01915 4.19472 4.20353 4.20511 4.22144 4.25528 4.31097 4.38434 4.41868 4.48577 4.49759 4.59653 4.59746 4.63915 4.67821 4.72096 4.72920 4.85476 4.88244 4.89766 4.93355 4.99864 5.06383 5.11590 5.19782 5.25244 5.27618 5.39220 5.44470 5.55446 5.78356 5.96206 6.11899 6.46359 6.63746 6.70456 7.34655 7.82292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.201 4.201 3 C -0.001 4.001 4 C -0.116 4.116 5 C -0.119 4.119 6 C -0.066 4.066 7 O -0.537 6.537 8 Si 0.964 3.036 9 H -0.288 1.288 10 H -0.263 1.263 11 H -0.234 1.234 12 C -0.062 4.062 13 C -0.081 4.081 14 C 0.102 3.898 15 N -0.542 5.542 16 C 0.064 3.936 17 C 0.141 3.859 18 N -0.692 5.692 19 C 0.620 3.380 20 O -0.628 6.628 21 C -0.685 4.685 22 C -0.306 4.306 23 C 0.330 3.670 24 C -0.170 4.170 25 C -0.171 4.171 26 C -0.131 4.131 27 C -0.107 4.107 28 C 0.090 3.910 29 C -0.139 4.139 30 C -0.088 4.088 31 H 0.257 0.743 32 H 0.123 0.877 33 H 0.115 0.885 34 H 0.390 0.610 35 H 0.142 0.858 36 H 0.115 0.885 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.052 0.948 41 H 0.407 0.593 42 H 0.299 0.701 43 H 0.163 0.837 44 H 0.193 0.807 45 H 0.193 0.807 46 H 0.163 0.837 47 H 0.094 0.906 48 H 0.024 0.976 49 H 0.083 0.917 50 H 0.040 0.960 51 H 0.062 0.938 52 H 0.051 0.949 53 H 0.070 0.930 54 H 0.085 0.915 55 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.779 66.662 26.813 72.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.201 4.201 3 C -0.001 4.001 4 C -0.134 4.134 5 C -0.119 4.119 6 C -0.178 4.178 7 O -0.344 6.344 8 Si 0.790 3.210 9 H -0.214 1.214 10 H -0.188 1.188 11 H -0.157 1.157 12 C -0.081 4.081 13 C -0.082 4.082 14 C -0.024 4.024 15 N -0.268 5.268 16 C -0.064 4.064 17 C 0.036 3.964 18 N -0.342 5.342 19 C 0.414 3.586 20 O -0.515 6.515 21 C -0.687 4.687 22 C -0.309 4.309 23 C 0.315 3.685 24 C -0.204 4.204 25 C -0.205 4.205 26 C -0.169 4.169 27 C -0.145 4.145 28 C -0.017 4.017 29 C -0.197 4.197 30 C -0.106 4.106 31 H 0.273 0.727 32 H 0.140 0.860 33 H 0.133 0.867 34 H 0.239 0.761 35 H 0.160 0.840 36 H 0.133 0.867 37 H 0.085 0.915 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.070 0.930 41 H 0.243 0.757 42 H 0.314 0.686 43 H 0.180 0.820 44 H 0.210 0.790 45 H 0.210 0.790 46 H 0.181 0.819 47 H 0.112 0.888 48 H 0.043 0.957 49 H 0.102 0.898 50 H 0.059 0.941 51 H 0.080 0.920 52 H 0.070 0.930 53 H 0.089 0.911 54 H 0.104 0.896 55 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 9.494 65.492 26.929 71.446 hybrid contribution -1.862 -0.158 -1.338 2.298 sum 7.633 65.334 25.591 70.581 Atomic orbital electron populations 1.25818 0.96659 0.97253 0.97094 1.20469 0.92834 1.03357 1.03472 1.15974 0.86959 1.01825 0.95334 1.21200 0.94102 0.99970 0.98122 1.20272 0.92727 1.00979 0.97919 1.24711 1.02454 0.94139 0.96469 1.86475 1.36803 1.30758 1.80320 0.85491 0.77422 0.80044 0.78082 1.21382 1.18758 1.15687 1.21135 1.00941 0.94997 0.91012 1.19856 0.92678 0.99600 0.96025 1.21212 1.00701 0.91293 0.89179 1.61925 1.29161 1.22744 1.12987 1.22249 0.92297 0.92519 0.99384 1.21104 0.90651 0.91561 0.93073 1.45613 1.37744 1.05992 1.44841 1.16299 0.80693 0.82487 0.79076 1.90496 1.47127 1.74580 1.39249 1.26241 1.10443 1.14611 1.17452 1.68116 0.92633 0.87813 0.82290 1.37777 1.05275 0.29114 0.96365 1.25791 0.95179 1.06069 0.93379 1.25793 0.97881 1.04766 0.92045 1.21956 0.99826 0.99188 0.95952 1.21595 0.96341 0.96349 1.00255 1.21668 0.98012 0.94075 0.87984 1.21864 0.95895 0.99042 1.02869 1.21292 0.93923 0.98470 0.96920 0.72728 0.85988 0.86709 0.76077 0.83979 0.86745 0.91457 0.90672 0.91194 0.92986 0.75669 0.68644 0.81958 0.79007 0.79023 0.81936 0.88766 0.95719 0.89808 0.94062 0.92029 0.92987 0.91148 0.89613 0.84777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.51 19.25 74.32 1.43 0.92 16 2 C -0.20 -1.55 13.24 30.01 0.40 -1.15 16 3 C 0.00 -0.01 5.72 -21.41 -0.12 -0.13 16 4 C -0.12 -0.70 8.37 22.52 0.19 -0.51 16 5 C -0.12 -0.41 5.35 -19.90 -0.11 -0.52 16 6 C -0.07 -0.09 2.80 71.23 0.20 0.11 16 7 O -0.54 2.27 12.83 -148.98 -1.91 0.36 16 8 Si 0.96 2.97 25.14 68.60 1.72 4.70 16 9 H -0.29 -2.98 7.11 99.48 0.71 -2.27 16 10 H -0.26 -1.30 7.11 99.48 0.71 -0.60 16 11 H -0.23 0.12 7.04 99.48 0.70 0.82 16 12 C -0.06 -0.13 9.33 22.32 0.21 0.08 16 13 C -0.08 -0.09 4.11 -19.90 -0.08 -0.17 16 14 C 0.10 -0.28 4.52 85.56 0.39 0.11 16 15 N -0.54 -3.21 4.12 -875.65 -3.60 -6.82 16 16 C 0.06 0.78 4.17 86.32 0.36 1.14 16 17 C 0.14 3.43 2.80 45.04 0.13 3.56 16 18 N -0.69 -24.25 4.40 -449.87 -1.98 -26.23 16 19 C 0.62 32.11 7.62 85.49 0.65 32.76 16 20 O -0.63 -35.63 16.75 -4.08 -0.07 -35.70 16 21 C -0.68 -41.66 13.62 30.00 0.41 -41.25 16 22 C -0.31 -18.78 24.44 74.30 1.82 -16.96 16 23 C 0.33 -20.30 15.76 30.59 0.48 -19.82 16 24 C -0.17 9.69 10.53 30.62 0.32 10.01 16 25 C -0.17 9.72 10.53 30.62 0.32 10.04 16 26 C -0.13 -2.63 5.67 30.67 0.17 -2.45 16 27 C -0.11 -1.43 5.21 30.65 0.16 -1.27 16 28 C 0.09 0.34 2.40 44.94 0.11 0.45 16 29 C -0.14 0.35 8.78 71.98 0.63 0.98 16 30 C -0.09 -0.30 7.51 22.52 0.17 -0.13 16 31 H 0.26 -1.31 7.80 -4.42 -0.03 -1.34 16 32 H 0.12 0.65 4.86 -2.91 -0.01 0.63 16 33 H 0.12 0.47 7.96 -2.39 -0.02 0.45 16 34 H 0.39 -5.20 8.70 -74.06 -0.64 -5.84 16 35 H 0.14 0.01 8.06 -2.91 -0.02 -0.02 16 36 H 0.11 -0.89 6.79 -2.39 -0.02 -0.90 16 37 H 0.07 -0.45 8.02 -2.38 -0.02 -0.47 16 38 H 0.07 1.13 5.65 -2.38 -0.01 1.11 16 39 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 40 H 0.05 1.58 7.58 -2.39 -0.02 1.56 16 41 H 0.41 13.11 8.14 -92.71 -0.75 12.36 16 42 H 0.30 -20.99 8.14 -2.39 -0.02 -21.01 16 43 H 0.16 -8.64 8.14 -2.39 -0.02 -8.66 16 44 H 0.19 -11.29 8.14 -2.39 -0.02 -11.31 16 45 H 0.19 -11.26 8.14 -2.38 -0.02 -11.28 16 46 H 0.16 -8.63 8.14 -2.39 -0.02 -8.65 16 47 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 48 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 49 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 50 H 0.04 0.85 7.73 -2.39 -0.02 0.83 16 51 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 52 H 0.05 0.08 8.14 -2.39 -0.02 0.06 16 53 H 0.07 -0.26 8.14 -2.39 -0.02 -0.28 16 54 H 0.09 -0.78 6.55 -2.39 -0.02 -0.79 16 55 H 0.13 0.15 8.06 -2.91 -0.02 0.13 16 Total: 0.00 -142.85 469.81 2.66 -140.19 By element: Atomic # 1 Polarization: -52.56 SS G_CDS: 0.27 Total: -52.29 kcal Atomic # 6 Polarization: -32.44 SS G_CDS: 8.23 Total: -24.21 kcal Atomic # 7 Polarization: -27.46 SS G_CDS: -5.58 Total: -33.05 kcal Atomic # 8 Polarization: -33.36 SS G_CDS: -1.98 Total: -35.34 kcal Atomic # 14 Polarization: 2.97 SS G_CDS: 1.72 Total: 4.70 kcal Total: -142.85 2.66 -140.19 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_275030_14113506_12659064_16591380.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 391.295 kcal (2) G-P(sol) polarization free energy of solvation -142.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 248.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -140.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 251.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds