Wall clock time and date at job start Thu Mar 4 2021 20:12:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39518 * 120.13952 * 269.33308 * 3 2 1 5 5 C 1.37992 * 119.85447 * 180.02562 * 4 3 2 6 6 C 1.50706 * 119.92892 * 179.97438 * 5 4 3 7 7 O 1.42902 * 109.46905 * 120.00057 * 6 5 4 8 8 Si 1.86301 * 109.47034 * 0.02562 * 6 5 4 9 9 H 1.48491 * 109.46863 * 180.02562 * 8 6 5 10 10 H 1.48501 * 109.47117 * 299.99797 * 8 6 5 11 11 H 1.48497 * 109.47363 * 59.99611 * 8 6 5 12 12 C 1.38327 * 120.14182 * 0.27179 * 5 4 3 13 13 C 1.38366 * 120.28393 * 359.44831 * 12 5 4 14 14 C 1.50703 * 119.92619 * 180.27857 * 13 12 5 15 15 N 1.46905 * 109.47031 * 270.27198 * 14 13 12 16 16 H 1.00894 * 109.46994 * 308.77154 * 15 14 13 17 17 C 1.46904 * 109.47073 * 68.77020 * 15 14 13 18 18 C 1.52997 * 109.46919 * 182.60658 * 17 15 14 19 19 C 1.46893 * 109.46956 * 188.76893 * 15 14 13 20 20 H 1.08999 * 109.47272 * 187.17953 * 19 15 14 21 21 C 1.53005 * 109.47139 * 67.18508 * 19 15 14 22 22 C 1.53002 * 109.47649 * 307.18237 * 19 15 14 23 23 N 1.46501 * 109.47134 * 278.34484 * 22 19 15 24 24 C 1.34772 * 119.99936 * 167.72813 * 23 22 19 25 25 O 1.21618 * 119.99849 * 0.02562 * 24 23 22 26 26 C 1.43195 * 120.00103 * 179.97438 * 24 23 22 27 27 C 9.79072 * 160.98211 * 302.46106 * 3 1 2 28 28 C 9.33964 * 141.07629 * 24.71422 * 5 1 2 29 29 C 1.52996 * 117.50206 * 59.99441 * 28 27 26 30 30 C 1.52996 * 117.49892 * 351.33377 * 28 27 26 31 31 C 1.37949 * 120.14291 * 0.54859 * 13 12 5 32 32 H 4.52055 * 14.01981 * 359.97438 * 4 2 1 33 33 H 1.08001 * 120.07043 * 0.03809 * 4 3 2 34 34 H 1.09000 * 109.46851 * 240.00025 * 6 5 4 35 35 H 0.96697 * 113.99752 * 299.99669 * 7 6 5 36 36 H 1.08002 * 119.85506 * 179.72441 * 12 5 4 37 37 H 1.08998 * 109.47148 * 30.27333 * 14 13 12 38 38 H 1.08998 * 109.47116 * 150.27409 * 14 13 12 39 39 H 1.08996 * 109.47122 * 302.61044 * 17 15 14 40 40 H 1.09003 * 109.46749 * 62.60998 * 17 15 14 41 41 H 1.09006 * 109.46949 * 180.88832 * 18 17 15 42 42 H 1.08996 * 109.47402 * 300.88229 * 18 17 15 43 43 H 1.08997 * 109.46965 * 60.89202 * 18 17 15 44 44 H 1.09002 * 109.47072 * 294.58333 * 21 19 15 45 45 H 1.08998 * 109.47003 * 54.58328 * 21 19 15 46 46 H 1.08996 * 109.47335 * 174.58380 * 21 19 15 47 47 H 1.08998 * 109.46578 * 38.34373 * 22 19 15 48 48 H 1.09002 * 109.47091 * 158.33963 * 22 19 15 49 49 H 0.96999 * 120.00041 * 347.72465 * 23 22 19 50 50 H 1.09000 * 115.54704 * 205.66662 * 28 27 26 51 51 H 1.09005 * 117.49908 * 359.97438 * 29 28 27 52 52 H 1.08995 * 117.50123 * 145.02007 * 29 28 27 53 53 H 1.09005 * 117.49919 * 214.97666 * 30 28 27 54 54 H 1.08996 * 117.50001 * 359.97438 * 30 28 27 55 55 H 1.08003 * 120.07240 * 179.74309 * 31 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3065 0.0150 1.2065 5 6 4.6864 0.0161 1.1996 6 6 5.4448 0.0322 2.5018 7 8 6.2676 -1.1330 2.5883 8 14 4.2394 0.0472 3.9223 9 1 4.9867 0.0637 5.2054 10 1 3.3839 1.2577 3.8327 11 1 3.3868 -1.1670 3.8609 12 6 5.3750 0.0086 0.0000 13 6 4.6862 -0.0114 -1.1999 14 6 5.4447 -0.0258 -2.5021 15 7 5.6899 1.3545 -2.9411 16 1 4.8224 1.8695 -2.9318 17 6 6.6492 1.9947 -2.0311 18 6 6.8551 3.4517 -2.4499 19 6 6.2391 1.3447 -4.3035 20 1 6.5397 2.3549 -4.5814 21 6 5.1728 0.8433 -5.2796 22 6 7.4553 0.4179 -4.3566 23 7 8.6344 1.1304 -3.8583 24 6 9.7640 0.4508 -3.5782 25 8 9.8046 -0.7540 -3.7397 26 6 10.9166 1.1472 -3.0917 27 6 11.8627 -1.7095 2.6919 28 6 13.0475 2.4242 -2.1949 29 6 11.9486 3.4259 -2.5550 30 6 12.2418 2.2446 -3.4831 31 6 3.3067 -0.0127 -1.2068 32 1 -1.0500 0.0005 0.0000 33 1 2.7699 0.0250 2.1437 34 1 6.0709 0.9233 2.5466 35 1 5.7760 -1.9650 2.5546 36 1 6.4551 0.0140 0.0000 37 1 6.3970 -0.5372 -2.3623 38 1 4.8589 -0.5488 -3.2580 39 1 6.2623 1.9605 -1.0127 40 1 7.6012 1.4657 -2.0760 41 1 7.5788 3.9223 -1.7843 42 1 7.2272 3.4863 -3.4738 43 1 5.9062 3.9846 -2.3899 44 1 4.9417 -0.1993 -5.0612 45 1 4.2705 1.4455 -5.1727 46 1 5.5464 0.9266 -6.3001 47 1 7.2712 -0.4589 -3.7358 48 1 7.6284 0.1042 -5.3861 49 1 8.6020 2.0913 -3.7300 50 1 14.0815 2.7556 -2.2900 51 1 11.0270 3.3926 -1.9739 52 1 12.2596 4.4163 -2.8874 53 1 12.7457 2.4583 -4.4258 54 1 11.5137 1.4340 -3.5125 55 1 2.7702 -0.0242 -2.1440 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_275030_14113532_12659064_16591380.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 20:12:51 Heat of formation + Delta-G solvation = 807.578778 kcal Electronic energy + Delta-G solvation = -33823.447299 eV Core-core repulsion = 29634.019303 eV Total energy + Delta-G solvation = -4189.427995 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 369.209 amu Computer time = 2.00 seconds Orbital eigenvalues (eV) -43.31988 -40.72865 -39.06736 -37.67053 -36.90025 -35.52816 -34.74876 -33.95424 -33.46069 -31.68490 -30.95211 -28.82177 -27.54983 -26.94012 -26.56336 -24.90605 -24.19552 -23.75875 -22.70125 -22.44012 -21.92090 -21.05506 -20.05516 -19.35460 -18.61054 -18.08719 -17.98588 -17.85462 -17.37839 -16.77169 -16.69000 -16.38974 -16.17796 -15.98769 -15.49433 -15.31951 -15.08936 -15.02107 -14.74389 -14.31827 -14.27139 -14.18389 -13.97179 -13.69984 -13.43991 -13.31767 -13.25043 -13.05673 -13.02945 -12.74058 -12.68216 -12.60751 -12.39392 -12.33943 -12.18018 -12.06969 -11.96072 -11.76912 -11.52218 -10.81867 -10.48338 -10.20078 -10.09328 -9.79182 -9.62362 -9.44842 -6.89157 -6.30533 -5.78232 -3.07642 -3.07403 -3.03325 -0.31185 -0.06936 0.86669 1.21366 1.44255 1.48728 1.65924 1.84638 1.97900 2.22257 2.54515 2.62468 2.80358 2.89919 3.07074 3.20179 3.24854 3.45055 3.48203 3.50700 3.63541 3.70704 3.78435 3.89790 3.90608 3.93892 4.00063 4.09127 4.16785 4.24425 4.29923 4.33585 4.42860 4.46643 4.51694 4.62874 4.64328 4.73569 4.75903 4.79947 4.81421 4.85773 4.93120 5.04254 5.16270 5.20265 5.21363 5.23210 5.26626 5.36721 5.64682 5.68507 5.73455 6.29810 6.36126 6.47805 6.64733 6.70188 7.81835 7.86557 8.67178 Molecular weight = 369.21amu Principal moments of inertia in cm(-1) A = 0.007067 B = 0.003100 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3960.908523 B = 9029.243533 C =11646.501503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.200 4.200 3 C 0.002 3.998 4 C -0.099 4.099 5 C -0.113 4.113 6 C -0.033 4.033 7 O -0.531 6.531 8 Si 0.935 3.065 9 H -0.262 1.262 10 H -0.286 1.286 11 H -0.275 1.275 12 C -0.047 4.047 13 C -0.120 4.120 14 C 0.033 3.967 15 N -0.357 5.357 16 H 0.437 0.563 17 C -0.021 4.021 18 C -0.190 4.190 19 C 0.030 3.970 20 H 0.136 0.864 21 C -0.175 4.175 22 C 0.091 3.909 23 N -0.774 5.774 24 C 0.563 3.437 25 O -0.679 6.679 26 C -0.944 4.944 27 C 2.000 2.000 28 C -0.563 4.563 29 C -0.208 4.208 30 C -0.167 4.167 31 C -0.062 4.062 32 H 0.243 0.757 33 H 0.113 0.887 34 H 0.157 0.843 35 H 0.392 0.608 36 H 0.172 0.828 37 H 0.142 0.858 38 H 0.161 0.839 39 H 0.157 0.843 40 H 0.126 0.874 41 H 0.085 0.915 42 H 0.053 0.947 43 H 0.102 0.898 44 H 0.098 0.902 45 H 0.110 0.890 46 H 0.081 0.919 47 H 0.097 0.903 48 H 0.045 0.955 49 H 0.382 0.618 50 H -0.080 1.080 51 H 0.093 0.907 52 H -0.044 1.044 53 H -0.027 1.027 54 H 0.229 0.771 55 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.952 -26.245 44.290 51.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.200 4.200 3 C 0.002 3.998 4 C -0.117 4.117 5 C -0.114 4.114 6 C -0.147 4.147 7 O -0.338 6.338 8 Si 0.766 3.234 9 H -0.187 1.187 10 H -0.212 1.212 11 H -0.201 1.201 12 C -0.065 4.065 13 C -0.121 4.121 14 C -0.087 4.087 15 N 0.063 4.937 16 H 0.276 0.724 17 C -0.143 4.143 18 C -0.248 4.248 19 C -0.073 4.073 20 H 0.153 0.847 21 C -0.233 4.233 22 C -0.033 4.033 23 N -0.431 5.431 24 C 0.383 3.617 25 O -0.578 6.578 26 C -0.963 4.963 27 C 2.000 2.000 28 C -0.581 4.581 29 C -0.244 4.244 30 C -0.185 4.185 31 C -0.080 4.080 32 H 0.259 0.741 33 H 0.130 0.870 34 H 0.175 0.825 35 H 0.242 0.758 36 H 0.189 0.811 37 H 0.160 0.840 38 H 0.179 0.821 39 H 0.175 0.825 40 H 0.144 0.856 41 H 0.104 0.896 42 H 0.071 0.929 43 H 0.120 0.880 44 H 0.117 0.883 45 H 0.129 0.871 46 H 0.100 0.900 47 H 0.115 0.885 48 H 0.063 0.937 49 H 0.217 0.783 50 H -0.062 1.062 51 H 0.111 0.889 52 H -0.026 1.026 53 H -0.010 1.010 54 H 0.240 0.760 55 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -2.779 -26.635 44.793 52.187 hybrid contribution -0.375 2.477 -3.246 4.100 sum -3.154 -24.157 41.547 48.163 Atomic orbital electron populations 1.25815 0.97024 0.97462 0.97287 1.20539 0.93138 1.03093 1.03273 1.15950 0.86152 1.03265 0.94439 1.21400 0.95085 0.98033 0.97186 1.20269 0.91837 1.01695 0.97565 1.24334 1.00239 0.93890 0.96254 1.86301 1.35789 1.15676 1.96057 0.85884 0.78301 0.79641 0.79587 1.18660 1.21218 1.20059 1.21401 1.02062 0.93597 0.89440 1.19330 0.92398 1.06550 0.93784 1.22815 1.06375 0.82019 0.97464 1.45546 1.18263 1.16156 1.13732 0.72366 1.24160 0.96873 0.96610 0.96643 1.22330 1.05419 0.93990 1.03017 1.23462 0.96650 1.05662 0.81500 0.84658 1.22403 0.97333 1.04642 0.98916 1.21814 0.84649 0.96010 1.00835 1.47675 1.13303 1.09773 1.72347 1.17600 0.83155 0.86999 0.73900 1.90332 1.86778 1.17719 1.63001 1.37583 1.06915 1.09185 1.42612 1.99958 0.00001 0.00010 0.00031 1.45128 0.80664 1.09277 1.23067 1.22316 1.07259 0.86232 1.08590 1.25096 1.04805 0.96885 0.91750 1.21386 0.93474 0.95451 0.97683 0.74103 0.86959 0.82549 0.75810 0.81077 0.84011 0.82136 0.82506 0.85618 0.89590 0.92860 0.87965 0.88332 0.87123 0.90025 0.88536 0.93692 0.78252 1.06183 0.88887 1.02648 1.01049 0.76009 0.82865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 3.54 19.25 74.32 1.43 4.98 16 2 C -0.20 4.49 13.24 30.02 0.40 4.89 16 3 C 0.00 -0.06 5.72 -21.41 -0.12 -0.18 16 4 C -0.10 3.05 8.37 22.52 0.19 3.24 16 5 C -0.11 4.38 5.38 -19.90 -0.11 4.28 16 6 C -0.03 1.40 2.82 71.24 0.20 1.60 16 7 O -0.53 25.47 12.77 -148.98 -1.90 23.57 16 8 Si 0.94 -30.01 25.07 68.60 1.72 -28.29 16 9 H -0.26 7.88 7.11 99.48 0.71 8.59 16 10 H -0.29 7.20 7.11 99.48 0.71 7.90 16 11 H -0.28 7.66 7.11 99.48 0.71 8.36 16 12 C -0.05 2.01 7.47 22.32 0.17 2.18 16 13 C -0.12 5.07 4.80 -19.90 -0.10 4.98 16 14 C 0.03 -1.47 3.91 85.56 0.33 -1.13 16 15 N -0.36 15.25 0.28 -875.51 -0.24 15.01 16 16 H 0.44 -21.83 8.10 -89.70 -0.73 -22.56 16 17 C -0.02 0.80 4.46 86.30 0.39 1.18 16 18 C -0.19 5.88 9.12 71.98 0.66 6.54 16 19 C 0.03 -1.01 2.24 44.92 0.10 -0.91 16 20 H 0.14 -4.25 5.67 -2.39 -0.01 -4.26 16 21 C -0.18 6.45 8.79 71.98 0.63 7.08 16 22 C 0.09 -1.57 4.84 86.38 0.42 -1.16 16 23 N -0.77 1.34 3.53 -470.74 -1.66 -0.33 16 24 C 0.56 9.97 7.65 85.49 0.65 10.62 16 25 O -0.68 -14.49 16.98 -4.09 -0.07 -14.56 16 26 C -0.94 -29.79 14.92 38.62 0.58 -29.21 16 27 C 2.00 -300.95 36.32 113.37 4.12 -296.83 16 28 C -0.56 -23.74 15.13 30.59 0.46 -23.28 16 29 C -0.21 -7.78 9.83 30.62 0.30 -7.48 16 30 C -0.17 -7.32 8.44 0.17 0.00 -7.32 16 31 C -0.06 2.28 9.40 22.52 0.21 2.49 16 32 H 0.24 -6.57 7.80 -4.42 -0.03 -6.61 16 33 H 0.11 -3.12 4.88 -2.91 -0.01 -3.14 16 34 H 0.16 -7.39 7.96 -2.39 -0.02 -7.41 16 35 H 0.39 -19.80 8.70 -74.06 -0.64 -20.44 16 36 H 0.17 -8.18 7.84 -2.91 -0.02 -8.20 16 37 H 0.14 -5.81 6.02 -2.39 -0.01 -5.82 16 38 H 0.16 -7.60 6.06 -2.39 -0.01 -7.61 16 39 H 0.16 -7.01 5.79 -2.39 -0.01 -7.03 16 40 H 0.13 -3.56 5.44 -2.39 -0.01 -3.58 16 41 H 0.09 -2.17 8.14 -2.38 -0.02 -2.19 16 42 H 0.05 -1.34 5.02 -2.39 -0.01 -1.35 16 43 H 0.10 -3.76 8.14 -2.39 -0.02 -3.78 16 44 H 0.10 -3.91 6.55 -2.39 -0.02 -3.92 16 45 H 0.11 -4.67 8.10 -2.39 -0.02 -4.69 16 46 H 0.08 -2.46 8.14 -2.39 -0.02 -2.48 16 47 H 0.10 -2.09 5.15 -2.39 -0.01 -2.11 16 48 H 0.04 -0.45 7.96 -2.39 -0.02 -0.47 16 49 H 0.38 -1.17 5.85 -92.71 -0.54 -1.71 16 50 H -0.08 -3.84 8.14 -2.39 -0.02 -3.86 16 51 H 0.09 2.72 7.73 -2.38 -0.02 2.70 16 52 H -0.04 -1.76 8.14 -2.39 -0.02 -1.78 16 53 H -0.03 -1.34 8.14 -2.38 -0.02 -1.36 16 54 H 0.23 9.08 0.17 -116.45 -0.02 9.06 16 55 H 0.15 -6.15 8.06 -2.91 -0.02 -6.17 16 Total: 1.00 -422.51 459.73 8.54 -413.97 By element: Atomic # 1 Polarization: -95.72 SS G_CDS: -0.21 Total: -95.92 kcal Atomic # 6 Polarization: -324.35 SS G_CDS: 10.91 Total: -313.44 kcal Atomic # 7 Polarization: 16.59 SS G_CDS: -1.91 Total: 14.68 kcal Atomic # 8 Polarization: 10.98 SS G_CDS: -1.97 Total: 9.00 kcal Atomic # 14 Polarization: -30.01 SS G_CDS: 1.72 Total: -28.29 kcal Total: -422.51 8.54 -413.97 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_275030_14113532_12659064_16591380.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1221.547 kcal (2) G-P(sol) polarization free energy of solvation -422.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 799.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -413.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 807.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.00 seconds