Wall clock time and date at job start Fri Mar 5 2021 03:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47186 * 26.47061 * 3 2 1 5 5 C 1.52996 * 109.47170 * 180.02562 * 4 3 2 6 6 C 1.50700 * 109.47411 * 180.02562 * 5 4 3 7 7 O 1.21287 * 119.99561 * 359.97438 * 6 5 4 8 8 N 1.34779 * 120.00625 * 180.02562 * 6 5 4 9 9 C 1.50025 * 129.20743 * 0.56026 * 8 6 5 10 10 C 1.54700 * 104.27861 * 137.01352 * 9 8 6 11 11 C 1.54344 * 104.63054 * 25.83679 * 10 9 8 12 12 C 1.48436 * 128.45207 * 179.97438 * 8 6 5 13 13 C 1.53761 * 106.97537 * 109.01999 * 12 8 6 14 14 N 1.46964 * 108.95568 * 63.52975 * 13 12 8 15 15 C 1.46899 * 111.00128 * 180.39111 * 14 13 12 16 16 C 1.50704 * 109.47069 * 170.00044 * 15 14 13 17 17 C 1.37950 * 119.93041 * 270.25138 * 16 15 14 18 18 C 1.39555 * 119.85628 * 180.27849 * 17 16 15 19 19 C 1.43206 * 120.13775 * 179.72567 * 18 17 16 20 20 C 8.81557 * 141.14186 * 316.26527 * 3 1 2 21 21 C 1.39508 * 119.71875 * 359.73864 * 18 17 16 22 22 C 1.37997 * 119.85754 * 0.02562 * 21 18 17 23 23 C 1.50695 * 119.93409 * 179.97438 * 22 21 18 24 24 O 1.42902 * 109.47404 * 244.97946 * 23 22 21 25 25 Si 1.86301 * 109.46898 * 4.97532 * 23 22 21 26 26 H 1.48499 * 109.47336 * 60.00078 * 25 23 22 27 27 H 1.48496 * 109.47289 * 180.02562 * 25 23 22 28 28 H 1.48501 * 109.47450 * 299.99984 * 25 23 22 29 29 C 1.38330 * 120.13901 * 359.97229 * 22 21 18 30 30 C 1.46965 * 111.61817 * 304.79028 * 14 13 12 31 31 H 4.44652 * 5.63351 * 179.97438 * 4 1 2 32 32 H 1.08999 * 109.47160 * 266.47304 * 3 2 1 33 33 H 1.09000 * 109.47467 * 146.46739 * 3 2 1 34 34 H 1.08998 * 109.47389 * 59.99987 * 4 3 2 35 35 H 1.09002 * 109.47040 * 299.99508 * 4 3 2 36 36 H 1.09005 * 109.47704 * 59.99953 * 5 4 3 37 37 H 1.09000 * 109.47327 * 299.99582 * 5 4 3 38 38 H 1.08997 * 112.34055 * 15.04075 * 9 8 6 39 39 H 1.08998 * 110.40558 * 267.05222 * 10 9 8 40 40 H 1.09000 * 110.40744 * 144.62642 * 10 9 8 41 41 H 1.08998 * 110.40726 * 241.20958 * 11 10 9 42 42 H 1.09001 * 110.40411 * 118.78188 * 11 10 9 43 43 H 1.09002 * 112.41436 * 345.30942 * 12 8 6 44 44 H 1.09003 * 109.55670 * 303.68970 * 13 12 8 45 45 H 1.09001 * 109.56143 * 183.37019 * 13 12 8 46 46 H 1.08992 * 109.47638 * 49.99551 * 15 14 13 47 47 H 1.09008 * 109.46876 * 289.99595 * 15 14 13 48 48 H 1.08004 * 120.06990 * 0.02562 * 17 16 15 49 49 H 9.00569 * 135.70191 * 322.02510 * 3 1 2 50 50 H 1.07998 * 120.07324 * 180.02562 * 21 18 17 51 51 H 1.09000 * 109.47401 * 124.97455 * 23 22 21 52 52 H 0.96692 * 114.00460 * 179.97438 * 24 23 22 53 53 H 1.08002 * 119.85338 * 180.02562 * 29 22 21 54 54 H 1.08997 * 109.56341 * 175.05066 * 30 14 13 55 55 H 1.09002 * 109.55601 * 295.37046 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 6 3.1565 -1.2904 -0.6430 5 6 4.6865 -1.2900 -0.6424 6 6 5.1895 -2.5613 -1.2763 7 8 4.4017 -3.3867 -1.6875 8 7 6.5147 -2.7817 -1.3852 9 6 7.6591 -1.9191 -0.9414 10 6 8.6568 -2.9106 -0.2974 11 6 8.3589 -4.2623 -0.9804 12 6 7.2102 -3.9555 -1.9697 13 6 7.8448 -3.4895 -3.2905 14 7 8.8552 -2.4630 -2.9987 15 6 9.4852 -1.9782 -4.2340 16 6 10.3282 -0.7675 -3.9262 17 6 9.7698 0.4927 -3.9834 18 6 10.5534 1.6131 -3.7038 19 6 9.9814 2.9244 -3.7670 20 6 9.5116 -3.9939 3.8236 21 6 11.8963 1.4502 -3.3627 22 6 12.4416 0.1839 -3.3043 23 6 13.8922 0.0061 -2.9366 24 8 14.6031 -0.5364 -4.0512 25 14 14.6234 1.6570 -2.4776 26 1 13.8846 2.2208 -1.3193 27 1 16.0529 1.4819 -2.1159 28 1 14.5156 2.5844 -3.6324 29 6 11.6595 -0.9226 -3.5825 30 6 8.2882 -1.3497 -2.2247 31 1 -1.0499 -0.0004 0.0000 32 1 3.0093 0.0640 1.0257 33 1 3.0090 0.8574 -0.5677 34 1 2.7933 -1.3539 -1.6687 35 1 2.7937 -2.1472 -0.0753 36 1 5.0495 -1.2268 0.3835 37 1 5.0499 -0.4332 -1.2098 38 1 7.3450 -1.1379 -0.2493 39 1 8.4830 -2.9810 0.7763 40 1 9.6827 -2.6015 -0.4978 41 1 8.0385 -4.9982 -0.2430 42 1 9.2380 -4.6187 -1.5172 43 1 6.5437 -4.8067 -2.1088 44 1 7.0743 -3.0696 -3.9373 45 1 8.3181 -4.3366 -3.7869 46 1 8.7128 -1.7095 -4.9546 47 1 10.1155 -2.7629 -4.6526 48 1 8.7295 0.6121 -4.2479 49 1 9.0927 -4.9556 3.8700 50 1 12.5079 2.3133 -3.1448 51 1 13.9714 -0.6747 -2.0890 52 1 15.5453 -0.6774 -3.8860 53 1 12.0909 -1.9116 -3.5351 54 1 9.0813 -0.6535 -1.9522 55 1 7.5377 -0.8339 -2.8237 RHF calculation, no. of doubly occupied orbitals= 71 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_275030_14113834_12658972_16591380.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 03:18:21 Heat of formation + Delta-G solvation = 357.159497 kcal Electronic energy + Delta-G solvation = -34903.810540 eV Core-core repulsion = 30580.280498 eV Total energy + Delta-G solvation = -4323.530042 eV No. of doubly occupied orbitals = 71 Molecular weight (most abundant/longest-lived isotopes) = 380.201 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -41.99525 -40.20628 -39.51107 -37.64936 -36.58409 -36.29627 -33.57290 -32.75518 -32.43023 -32.28762 -32.05542 -29.00983 -27.99983 -26.44080 -25.57484 -25.47571 -25.16867 -24.59718 -23.57809 -22.07429 -21.38365 -21.03240 -19.68068 -19.13716 -18.83146 -18.40285 -18.22297 -17.19078 -16.99368 -16.85259 -16.59917 -16.40498 -16.06373 -15.63315 -15.49788 -15.40932 -15.08177 -14.95166 -14.66133 -14.47872 -14.33894 -14.12857 -13.85576 -13.69174 -13.51028 -13.42545 -13.29664 -13.16949 -12.88196 -12.67270 -12.56752 -12.39612 -12.30499 -12.23912 -12.15638 -12.07574 -12.04256 -11.80064 -11.67927 -11.46325 -11.26743 -11.23009 -11.03273 -10.92105 -10.25480 -9.97133 -9.89740 -9.83146 -9.58608 -9.28059 -6.26588 -1.71251 -1.70568 0.71613 0.92679 1.17780 1.31287 1.32567 1.46501 1.50710 1.73320 1.87142 1.92886 2.05232 2.76133 3.00691 3.23711 3.31914 3.47737 3.59168 3.73312 3.80946 3.84584 3.92227 3.97336 3.99741 4.03354 4.07626 4.11227 4.23041 4.32594 4.40474 4.41575 4.47831 4.51241 4.54135 4.55657 4.58012 4.60976 4.71414 4.72784 4.76065 4.78862 4.83439 4.88517 4.95888 5.01892 5.11235 5.15517 5.18585 5.24826 5.31137 5.41929 5.63370 5.72091 5.80480 5.83638 5.95755 6.07486 6.15103 6.20945 6.51819 6.66975 6.76634 6.95517 7.06968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.217 4.217 3 C -0.011 4.011 4 C -0.092 4.092 5 C -0.128 4.128 6 C 0.528 3.472 7 O -0.594 6.594 8 N -0.625 5.625 9 C 0.132 3.868 10 C -0.101 4.101 11 C -0.103 4.103 12 C 0.126 3.874 13 C 0.039 3.961 14 N -0.496 5.496 15 C 0.107 3.893 16 C -0.007 4.007 17 C -0.279 4.279 18 C -0.167 4.167 19 C -0.314 4.314 20 C 0.981 3.019 21 C -0.306 4.306 22 C -0.010 4.010 23 C -0.065 4.065 24 O -0.563 6.563 25 Si 0.980 3.020 26 H -0.272 1.272 27 H -0.222 1.222 28 H -0.315 1.315 29 C -0.260 4.260 30 C 0.045 3.955 31 H 0.236 0.764 32 H 0.119 0.881 33 H 0.093 0.907 34 H 0.037 0.963 35 H 0.066 0.934 36 H 0.143 0.857 37 H 0.095 0.905 38 H 0.135 0.865 39 H 0.129 0.871 40 H 0.086 0.914 41 H 0.098 0.902 42 H 0.082 0.918 43 H 0.091 0.909 44 H -0.005 1.005 45 H 0.097 0.903 46 H 0.005 0.995 47 H 0.091 0.909 48 H 0.055 0.945 49 H 0.019 0.981 50 H 0.072 0.928 51 H 0.106 0.894 52 H 0.394 0.606 53 H 0.115 0.885 54 H 0.077 0.923 55 H -0.008 1.008 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.834 -25.638 42.053 49.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.217 4.217 3 C -0.047 4.047 4 C -0.130 4.130 5 C -0.167 4.167 6 C 0.320 3.680 7 O -0.475 6.475 8 N -0.359 5.359 9 C 0.030 3.970 10 C -0.138 4.138 11 C -0.141 4.141 12 C 0.022 3.978 13 C -0.090 4.090 14 N -0.220 5.220 15 C -0.020 4.020 16 C -0.007 4.007 17 C -0.298 4.298 18 C -0.167 4.167 19 C -0.314 4.314 20 C 0.961 3.039 21 C -0.324 4.324 22 C -0.010 4.010 23 C -0.176 4.176 24 O -0.371 6.371 25 Si 0.808 3.192 26 H -0.197 1.197 27 H -0.145 1.145 28 H -0.243 1.243 29 C -0.279 4.279 30 C -0.084 4.084 31 H 0.253 0.747 32 H 0.137 0.863 33 H 0.111 0.889 34 H 0.056 0.944 35 H 0.085 0.915 36 H 0.161 0.839 37 H 0.113 0.887 38 H 0.152 0.848 39 H 0.147 0.853 40 H 0.105 0.895 41 H 0.116 0.884 42 H 0.101 0.899 43 H 0.109 0.891 44 H 0.013 0.987 45 H 0.115 0.885 46 H 0.023 0.977 47 H 0.109 0.891 48 H 0.074 0.926 49 H 0.039 0.961 50 H 0.090 0.910 51 H 0.123 0.877 52 H 0.244 0.756 53 H 0.133 0.867 54 H 0.095 0.905 55 H 0.010 0.990 Dipole moment (debyes) X Y Z Total from point charges 1.442 -25.627 42.098 49.306 hybrid contribution -1.283 -1.519 -2.132 2.915 sum 0.159 -27.146 39.966 48.314 Atomic orbital electron populations 1.25714 0.97169 1.00230 1.00795 1.23845 0.95880 1.01073 1.00866 1.18860 0.83610 0.98305 1.03909 1.21154 0.93889 0.97425 1.00521 1.21677 0.96055 0.94244 1.04712 1.20933 0.80171 0.88701 0.78213 1.90714 1.55561 1.49332 1.51880 1.49974 1.04415 1.22201 1.59296 1.23200 0.84896 0.94962 0.93950 1.22484 0.98663 0.91806 1.00886 1.22414 0.96013 0.98308 0.97348 1.22452 0.93844 0.88714 0.92758 1.22773 0.92616 0.95925 0.97676 1.62223 1.29729 1.11946 1.18118 1.20919 0.95402 0.94726 0.90964 1.19235 0.94311 0.91838 0.95332 1.19327 0.96583 0.91968 1.21905 1.20959 0.96185 0.99809 0.99698 1.81830 0.30133 0.89265 1.30181 1.85689 0.18696 0.99302 0.00215 1.19514 0.94490 0.95577 1.22851 1.19065 0.93578 0.92447 0.95925 1.24650 0.91763 1.08545 0.92605 1.86528 1.26236 1.86286 1.38090 0.85416 0.79419 0.76555 0.77806 1.19656 1.14477 1.24279 1.19703 0.93140 0.96664 1.18361 1.22709 0.97376 0.92926 0.95364 0.74698 0.86322 0.88915 0.94385 0.91499 0.83872 0.88661 0.84755 0.85260 0.89539 0.88397 0.89902 0.89077 0.98709 0.88499 0.97685 0.89113 0.92614 0.96116 0.91007 0.87665 0.75611 0.86741 0.90459 0.99000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -0.99 19.25 74.32 1.43 0.44 16 2 C -0.22 -1.10 13.34 31.12 0.42 -0.69 16 3 C -0.01 0.01 5.70 28.79 0.16 0.18 16 4 C -0.09 -0.12 4.46 30.59 0.14 0.02 16 5 C -0.13 0.44 4.81 29.85 0.14 0.58 16 6 C 0.53 2.00 7.94 87.66 0.70 2.70 16 7 O -0.59 -8.21 16.32 -3.05 -0.05 -8.26 16 8 N -0.63 0.61 2.81 -751.76 -2.12 -1.50 16 9 C 0.13 -0.79 4.10 45.17 0.19 -0.61 16 10 C -0.10 1.81 6.16 31.63 0.19 2.01 16 11 C -0.10 1.46 6.15 31.62 0.19 1.66 16 12 C 0.13 -0.20 4.15 45.45 0.19 -0.01 16 13 C 0.04 0.25 5.02 86.55 0.43 0.68 16 14 N -0.50 -4.46 3.78 -897.13 -3.40 -7.86 16 15 C 0.11 2.02 5.45 85.56 0.47 2.49 16 16 C -0.01 -0.19 4.11 -19.90 -0.08 -0.27 16 17 C -0.28 -10.28 7.61 22.52 0.17 -10.11 16 18 C -0.17 -7.09 5.72 -21.41 -0.12 -7.21 16 19 C -0.31 -14.17 25.13 69.07 1.74 -12.43 16 20 C 0.98 -75.96 31.14 113.37 3.53 -72.43 16 21 C -0.31 -11.60 8.37 22.52 0.19 -11.41 16 22 C -0.01 -0.29 5.38 -19.90 -0.11 -0.40 16 23 C -0.07 -1.09 2.79 71.23 0.20 -0.89 16 24 O -0.56 -9.01 12.81 -148.98 -1.91 -10.92 16 25 Si 0.98 16.27 25.13 68.60 1.72 18.00 16 26 H -0.27 -5.11 7.11 99.48 0.71 -4.40 16 27 H -0.22 -1.83 7.11 99.48 0.71 -1.12 16 28 H -0.31 -8.57 7.04 99.48 0.70 -7.87 16 29 C -0.26 -6.80 9.33 22.32 0.21 -6.59 16 30 C 0.05 0.42 3.95 86.58 0.34 0.76 16 31 H 0.24 -0.43 7.80 -4.42 -0.03 -0.47 16 32 H 0.12 -0.96 8.14 -2.39 -0.02 -0.98 16 33 H 0.09 -0.16 8.14 -2.39 -0.02 -0.18 16 34 H 0.04 0.33 8.10 -2.39 -0.02 0.31 16 35 H 0.07 0.16 8.10 -2.39 -0.02 0.14 16 36 H 0.14 -1.98 8.12 -2.38 -0.02 -2.00 16 37 H 0.10 -0.18 8.14 -2.39 -0.02 -0.20 16 38 H 0.13 -1.63 7.60 -2.39 -0.02 -1.64 16 39 H 0.13 -4.43 8.14 -2.39 -0.02 -4.45 16 40 H 0.09 -1.20 7.85 -2.39 -0.02 -1.22 16 41 H 0.10 -2.18 8.14 -2.39 -0.02 -2.20 16 42 H 0.08 -0.95 7.82 -2.39 -0.02 -0.97 16 43 H 0.09 0.08 7.94 -2.39 -0.02 0.06 16 44 H -0.01 -0.08 8.12 -2.39 -0.02 -0.10 16 45 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 46 H 0.00 0.12 8.01 -2.39 -0.02 0.10 16 47 H 0.09 1.43 8.08 -2.38 -0.02 1.41 16 48 H 0.06 2.18 7.89 -2.91 -0.02 2.16 16 49 H 0.02 -1.47 7.80 -4.42 -0.03 -1.50 16 50 H 0.07 2.75 4.86 -2.91 -0.01 2.74 16 51 H 0.11 0.80 7.96 -2.39 -0.02 0.78 16 52 H 0.39 1.20 8.74 -74.06 -0.65 0.56 16 53 H 0.11 2.38 8.06 -2.91 -0.02 2.36 16 54 H 0.08 1.22 6.15 -2.39 -0.01 1.21 16 55 H -0.01 -0.16 7.97 -2.39 -0.02 -0.17 16 Total: 0.00 -145.37 468.01 5.95 -139.42 By element: Atomic # 1 Polarization: -18.31 SS G_CDS: 0.98 Total: -17.33 kcal Atomic # 6 Polarization: -122.25 SS G_CDS: 10.71 Total: -111.54 kcal Atomic # 7 Polarization: -3.85 SS G_CDS: -5.51 Total: -9.36 kcal Atomic # 8 Polarization: -17.23 SS G_CDS: -1.96 Total: -19.18 kcal Atomic # 14 Polarization: 16.27 SS G_CDS: 1.72 Total: 18.00 kcal Total: -145.37 5.95 -139.42 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_275030_14113834_12658972_16591380.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 496.580 kcal (2) G-P(sol) polarization free energy of solvation -145.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 351.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -139.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 357.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds