Wall clock time and date at job start Fri Mar 5 2021 09:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39715 * 119.99905 * 278.37980 * 3 2 1 5 5 C 1.37596 * 120.00510 * 180.02562 * 4 3 2 6 6 C 1.39747 * 119.99691 * 359.97130 * 5 4 3 7 7 C 1.47693 * 120.00455 * 180.02562 * 6 5 4 8 8 O 1.21566 * 119.99841 * 0.02562 * 7 6 5 9 9 N 1.34775 * 119.99904 * 180.02562 * 7 6 5 10 10 C 1.46497 * 119.99724 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.46985 * 179.97438 * 10 9 7 12 12 C 1.53514 * 114.17088 * 184.99390 * 11 10 9 13 13 N 1.47479 * 87.93405 * 220.14043 * 12 11 10 14 14 C 1.46894 * 110.99953 * 138.70663 * 13 12 11 15 15 C 1.50703 * 109.47274 * 170.00304 * 14 13 12 16 16 C 1.37946 * 119.93063 * 89.99685 * 15 14 13 17 17 C 1.39556 * 119.85442 * 180.02562 * 16 15 14 18 18 C 1.43205 * 120.14159 * 180.02562 * 17 16 15 19 19 C 9.88275 * 109.10414 * 144.07239 * 7 1 2 20 20 C 1.39526 * 119.71906 * 0.27677 * 17 16 15 21 21 C 1.37992 * 119.84926 * 359.42184 * 20 17 16 22 22 C 1.50705 * 119.92612 * 180.31689 * 21 20 17 23 23 O 1.42901 * 109.46865 * 120.26171 * 22 21 20 24 24 Si 1.86304 * 109.46889 * 0.26306 * 22 21 20 25 25 H 1.48498 * 109.47201 * 59.99984 * 24 22 21 26 26 H 1.48502 * 109.46772 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47111 * 299.99227 * 24 22 21 28 28 C 1.38321 * 120.14671 * 0.58069 * 21 20 17 29 29 C 1.47479 * 87.83553 * 27.01207 * 13 12 11 30 30 C 1.39745 * 119.99368 * 0.28098 * 6 5 4 31 31 C 1.37603 * 119.99192 * 359.48875 * 30 6 5 32 32 H 4.51954 * 14.06437 * 359.97438 * 4 2 1 33 33 H 1.08001 * 119.99836 * 359.97438 * 4 3 2 34 34 H 1.07999 * 120.00414 * 179.97438 * 5 4 3 35 35 H 0.96999 * 120.00108 * 359.97438 * 9 7 6 36 36 H 1.08996 * 109.47283 * 59.99774 * 10 9 7 37 37 H 1.09001 * 109.47291 * 299.99345 * 10 9 7 38 38 H 1.09000 * 113.25795 * 317.94974 * 11 10 9 39 39 H 1.09007 * 113.47206 * 105.37598 * 12 11 10 40 40 H 1.09001 * 113.47873 * 334.91151 * 12 11 10 41 41 H 1.09002 * 109.47576 * 50.00004 * 14 13 12 42 42 H 1.09004 * 109.47351 * 289.99958 * 14 13 12 43 43 H 1.07995 * 120.07468 * 0.02562 * 16 15 14 44 44 H 9.56436 * 106.99094 * 237.79909 * 9 1 2 45 45 H 1.07997 * 120.07215 * 179.69882 * 20 17 16 46 46 H 1.08998 * 109.47044 * 240.26153 * 22 21 20 47 47 H 0.96706 * 114.00080 * 299.99750 * 23 22 21 48 48 H 1.07992 * 119.86036 * 179.74035 * 28 21 20 49 49 H 1.09001 * 113.47651 * 87.75729 * 29 13 12 50 50 H 1.09004 * 113.47517 * 218.22377 * 29 13 12 51 51 H 1.07997 * 120.00066 * 179.70362 * 30 6 5 52 52 H 1.07999 * 119.99681 * 180.23483 * 31 30 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6059 0.0006 0.0000 4 6 3.3045 -0.1754 1.1971 5 6 4.6805 -0.1743 1.1973 6 6 5.3792 0.0024 0.0000 7 6 6.8562 0.0030 -0.0001 8 8 7.4641 -0.1505 1.0414 9 7 7.5299 0.1739 -1.1547 10 6 8.9949 0.1740 -1.1548 11 6 9.5048 0.3845 -2.5819 12 6 11.0297 0.2826 -2.7260 13 7 10.9641 1.4219 -3.6601 14 6 12.0669 2.3625 -3.4215 15 6 12.1144 3.3744 -4.5372 16 6 11.3967 4.5479 -4.4331 17 6 11.4414 5.4836 -5.4675 18 6 10.6992 6.7041 -5.3657 19 6 10.0873 7.5663 -5.4795 20 6 12.2082 5.2227 -6.6036 21 6 12.9264 4.0478 -6.6926 22 6 13.7608 3.7675 -7.9158 23 8 15.1277 3.6039 -7.5327 24 14 13.6159 5.1931 -9.1064 25 1 14.0987 6.4356 -8.4520 26 1 14.4386 4.9171 -10.3115 27 1 12.1954 5.3630 -9.5046 28 6 12.8779 3.1244 -5.6639 29 6 9.7403 1.8537 -2.9595 30 6 4.6804 0.1837 -1.1965 31 6 3.3043 0.1778 -1.1970 32 1 -1.0501 0.0005 0.0002 33 1 2.7646 -0.3115 2.1224 34 1 5.2205 -0.3099 2.1227 35 1 7.0448 0.2960 -1.9858 36 1 9.3583 -0.7815 -0.7768 37 1 9.3582 0.9793 -0.5164 38 1 8.9471 -0.1837 -3.3264 39 1 11.3606 -0.6444 -3.1944 40 1 11.5688 0.5062 -1.8054 41 1 13.0094 1.8160 -3.3863 42 1 11.9085 2.8751 -2.4727 43 1 10.8016 4.7420 -3.5532 44 1 9.5448 8.6085 -5.1888 45 1 12.2430 5.9407 -7.4096 46 1 13.4064 2.8554 -8.3961 47 1 15.5099 4.3787 -7.0981 48 1 13.4385 2.2045 -5.7402 49 1 9.9352 2.4968 -2.1012 50 1 8.9783 2.2583 -3.6257 51 1 5.2202 0.3250 -2.1211 52 1 2.7642 0.3141 -2.1222 RHF calculation, no. of doubly occupied orbitals= 71 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_275030_14113930_14126694_16591380.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 09:44:43 Heat of formation + Delta-G solvation = 167.031615 kcal Electronic energy + Delta-G solvation = -32863.981623 eV Core-core repulsion = 28458.603834 eV Total energy + Delta-G solvation = -4405.377789 eV No. of doubly occupied orbitals = 71 Molecular weight (most abundant/longest-lived isotopes) = 388.170 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -41.71583 -41.18677 -40.53907 -39.48155 -37.83597 -36.34664 -35.85107 -34.87807 -33.91986 -32.25967 -31.93053 -31.63991 -30.49826 -27.79662 -27.08068 -26.71797 -25.50551 -24.37682 -23.79092 -23.40162 -21.96352 -21.64121 -20.73002 -20.00868 -19.29943 -18.87414 -17.82720 -17.52736 -17.40494 -16.91400 -16.74344 -16.72828 -16.42922 -16.38471 -16.16581 -15.99326 -15.82901 -15.61469 -15.40965 -14.91180 -14.79606 -14.73518 -14.51143 -14.40008 -14.21901 -14.12560 -13.72658 -13.65919 -13.34218 -13.09612 -13.01374 -12.72278 -12.68078 -12.46965 -12.32331 -12.28129 -12.21060 -12.18306 -11.93373 -11.83235 -11.68646 -11.51246 -11.48867 -11.15239 -10.47219 -10.27203 -10.14359 -10.02616 -9.77114 -9.63542 -9.61108 -0.58644 -0.02063 0.15757 0.27378 1.12071 1.38337 1.42029 1.46049 1.70357 1.84661 2.01001 2.08942 2.22220 2.26453 2.90857 2.92589 3.11115 3.22636 3.28315 3.30877 3.46194 3.62231 3.66129 3.68216 3.71893 3.78021 3.85820 3.94276 4.05399 4.16829 4.21001 4.21462 4.24998 4.31084 4.38383 4.40049 4.49399 4.51934 4.53718 4.60497 4.62082 4.69176 4.77256 4.84261 4.88690 4.91100 4.92260 5.05119 5.12900 5.16964 5.19407 5.27909 5.31835 5.32142 5.34365 5.37631 5.52656 5.71271 5.84251 5.99130 6.41229 6.49965 6.51149 6.66023 7.08458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.208 4.208 3 C 0.027 3.973 4 C -0.112 4.112 5 C -0.069 4.069 6 C -0.144 4.144 7 C 0.557 3.443 8 O -0.579 6.579 9 N -0.709 5.709 10 C 0.133 3.867 11 C -0.114 4.114 12 C 0.009 3.991 13 N -0.478 5.478 14 C 0.059 3.941 15 C -0.072 4.072 16 C -0.088 4.088 17 C -0.021 4.021 18 C -0.187 4.187 19 C -0.169 4.169 20 C -0.119 4.119 21 C -0.118 4.118 22 C -0.071 4.071 23 O -0.548 6.548 24 Si 0.972 3.028 25 H -0.257 1.257 26 H -0.267 1.267 27 H -0.263 1.263 28 C -0.069 4.069 29 C 0.002 3.998 30 C -0.072 4.072 31 C -0.107 4.107 32 H 0.258 0.742 33 H 0.142 0.858 34 H 0.134 0.866 35 H 0.416 0.584 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.120 0.880 39 H 0.096 0.904 40 H 0.082 0.918 41 H 0.093 0.907 42 H 0.065 0.935 43 H 0.130 0.870 44 H 0.296 0.704 45 H 0.122 0.878 46 H 0.129 0.871 47 H 0.389 0.611 48 H 0.137 0.863 49 H 0.076 0.924 50 H 0.085 0.915 51 H 0.164 0.836 52 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.197 1.620 -2.227 4.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.208 4.208 3 C 0.026 3.974 4 C -0.130 4.130 5 C -0.088 4.088 6 C -0.147 4.147 7 C 0.345 3.655 8 O -0.460 6.460 9 N -0.361 5.361 10 C 0.009 3.991 11 C -0.133 4.133 12 C -0.120 4.120 13 N -0.200 5.200 14 C -0.069 4.069 15 C -0.072 4.072 16 C -0.106 4.106 17 C -0.021 4.021 18 C -0.187 4.187 19 C -0.184 4.184 20 C -0.137 4.137 21 C -0.119 4.119 22 C -0.182 4.182 23 O -0.355 6.355 24 Si 0.798 3.202 25 H -0.181 1.181 26 H -0.192 1.192 27 H -0.187 1.187 28 C -0.087 4.087 29 C -0.127 4.127 30 C -0.090 4.090 31 C -0.125 4.125 32 H 0.274 0.726 33 H 0.160 0.840 34 H 0.152 0.848 35 H 0.254 0.746 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.138 0.862 39 H 0.114 0.886 40 H 0.100 0.900 41 H 0.112 0.888 42 H 0.083 0.917 43 H 0.148 0.852 44 H 0.311 0.689 45 H 0.140 0.860 46 H 0.147 0.853 47 H 0.238 0.762 48 H 0.155 0.845 49 H 0.094 0.906 50 H 0.104 0.896 51 H 0.181 0.819 52 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -2.815 1.537 -3.077 4.445 hybrid contribution -0.164 0.570 1.228 1.363 sum -2.979 2.107 -1.850 4.091 Atomic orbital electron populations 1.25868 0.96664 0.95989 0.96777 1.20382 0.92725 1.03967 1.03758 1.16444 0.87278 0.99140 0.94491 1.21322 0.93592 0.99967 0.98102 1.21247 0.93779 0.95610 0.98125 1.20063 0.92319 1.06781 0.95509 1.18440 0.87592 0.75844 0.83629 1.90783 1.70698 1.51342 1.33187 1.45789 1.07686 1.72809 1.09855 1.21353 0.78874 1.02300 0.96571 1.22881 0.97139 0.97470 0.95775 1.23855 0.95202 0.96747 0.96214 1.68967 1.02942 1.05937 1.42106 1.21665 0.97112 0.93270 0.94817 1.19748 0.96700 0.94494 0.96299 1.21176 0.98501 0.92918 0.98043 1.16441 0.98109 0.92195 0.95351 1.17492 1.00456 0.97530 1.03266 1.26625 0.96414 1.00157 0.95176 1.21177 0.97674 0.97351 0.97493 1.20283 0.99253 0.94401 0.97927 1.24902 0.82961 1.11844 0.98531 1.86487 1.23138 1.44447 1.81425 0.85353 0.80051 0.76745 0.78076 1.18120 1.19207 1.18746 1.21069 0.97112 0.98717 0.91846 1.24088 0.94456 0.96391 0.97765 1.21475 0.94004 0.96064 0.97464 1.21426 0.94102 0.99216 0.97764 0.72621 0.84031 0.84793 0.74614 0.91248 0.91747 0.86182 0.88587 0.90011 0.88816 0.91696 0.85219 0.68884 0.86023 0.85327 0.76217 0.84542 0.90616 0.89635 0.81867 0.82934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.18 19.25 74.32 1.43 1.61 16 2 C -0.21 -0.61 13.23 30.02 0.40 -0.21 16 3 C 0.03 0.07 5.73 -21.32 -0.12 -0.05 16 4 C -0.11 -0.32 9.73 22.48 0.22 -0.10 16 5 C -0.07 -0.29 9.57 22.48 0.22 -0.07 16 6 C -0.14 -0.36 5.88 -20.05 -0.12 -0.47 16 7 C 0.56 2.68 7.77 86.74 0.67 3.35 16 8 O -0.58 -7.75 16.33 -3.92 -0.06 -7.82 16 9 N -0.71 1.82 5.50 -466.13 -2.57 -0.74 16 10 C 0.13 -0.41 5.59 86.38 0.48 0.07 16 11 C -0.11 0.74 4.08 -10.45 -0.04 0.69 16 12 C 0.01 -0.05 7.26 83.57 0.61 0.56 16 13 N -0.48 1.15 6.32 -932.47 -5.89 -4.74 16 14 C 0.06 -0.14 4.94 85.56 0.42 0.28 16 15 C -0.07 -0.09 5.46 -19.90 -0.11 -0.20 16 16 C -0.09 -0.26 9.40 22.52 0.21 -0.05 16 17 C -0.02 -0.12 5.72 -21.40 -0.12 -0.24 16 18 C -0.19 -0.94 12.65 30.35 0.38 -0.55 16 19 C -0.17 -0.03 18.54 74.65 1.38 1.36 16 20 C -0.12 -0.54 8.37 22.52 0.19 -0.35 16 21 C -0.12 -0.27 5.39 -19.90 -0.11 -0.38 16 22 C -0.07 0.01 2.82 71.24 0.20 0.21 16 23 O -0.55 -0.23 12.77 -148.98 -1.90 -2.13 16 24 Si 0.97 0.62 25.07 68.60 1.72 2.34 16 25 H -0.26 -0.36 7.11 99.48 0.71 0.35 16 26 H -0.27 -0.82 7.11 99.48 0.71 -0.11 16 27 H -0.26 -0.67 7.11 99.48 0.71 0.04 16 28 C -0.07 -0.13 9.25 22.32 0.21 0.08 16 29 C 0.00 -0.01 7.29 83.57 0.61 0.60 16 30 C -0.07 0.21 9.52 22.48 0.21 0.43 16 31 C -0.11 0.13 9.73 22.48 0.22 0.35 16 32 H 0.26 -2.46 7.80 -4.41 -0.03 -2.49 16 33 H 0.14 0.05 8.06 -2.91 -0.02 0.02 16 34 H 0.13 0.69 7.64 -2.91 -0.02 0.66 16 35 H 0.42 -3.56 6.49 -92.71 -0.60 -4.16 16 36 H 0.07 -0.07 8.14 -2.39 -0.02 -0.09 16 37 H 0.06 -0.06 7.82 -2.39 -0.02 -0.08 16 38 H 0.12 -0.93 8.14 -2.39 -0.02 -0.95 16 39 H 0.10 -0.54 8.14 -2.38 -0.02 -0.56 16 40 H 0.08 -0.53 7.87 -2.39 -0.02 -0.55 16 41 H 0.09 -0.33 8.02 -2.39 -0.02 -0.35 16 42 H 0.06 -0.24 7.24 -2.38 -0.02 -0.26 16 43 H 0.13 0.09 8.06 -2.91 -0.02 0.06 16 44 H 0.30 -3.64 9.09 4.90 0.04 -3.59 16 45 H 0.12 0.43 4.87 -2.91 -0.01 0.41 16 46 H 0.13 -0.26 7.96 -2.39 -0.02 -0.28 16 47 H 0.39 -2.18 8.70 -74.05 -0.64 -2.82 16 48 H 0.14 0.05 8.06 -2.91 -0.02 0.02 16 49 H 0.08 -0.37 7.16 -2.39 -0.02 -0.39 16 50 H 0.09 -0.34 8.14 -2.38 -0.02 -0.36 16 51 H 0.16 -1.69 6.38 -2.91 -0.02 -1.71 16 52 H 0.15 -0.81 8.06 -2.91 -0.02 -0.83 16 Total: 0.00 -23.47 446.34 -0.71 -24.18 By element: Atomic # 1 Polarization: -18.56 SS G_CDS: 0.55 Total: -18.01 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: 7.44 Total: 6.92 kcal Atomic # 7 Polarization: 2.98 SS G_CDS: -8.46 Total: -5.48 kcal Atomic # 8 Polarization: -7.98 SS G_CDS: -1.97 Total: -9.95 kcal Atomic # 14 Polarization: 0.62 SS G_CDS: 1.72 Total: 2.34 kcal Total: -23.47 -0.71 -24.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_275030_14113930_14126694_16591380.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.210 kcal (2) G-P(sol) polarization free energy of solvation -23.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 167.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 167.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds