Wall clock time and date at job start Fri Mar 5 2021 22:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17392 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39516 * 120.13749 * 133.28738 * 3 2 1 5 5 C 1.37997 * 119.85320 * 180.02562 * 4 3 2 6 6 C 1.50702 * 119.92671 * 179.97438 * 5 4 3 7 7 O 1.42898 * 109.47216 * 244.99828 * 6 5 4 8 8 Si 1.86301 * 109.47128 * 5.00227 * 6 5 4 9 9 H 1.48501 * 109.47021 * 179.97438 * 8 6 5 10 10 H 1.48502 * 109.46983 * 299.99257 * 8 6 5 11 11 H 1.48498 * 109.47415 * 60.00012 * 8 6 5 12 12 C 1.38323 * 120.14192 * 359.97438 * 5 4 3 13 13 C 1.38365 * 120.28597 * 0.02562 * 12 5 4 14 14 C 1.50700 * 119.92384 * 179.97438 * 13 12 5 15 15 N 1.46897 * 109.47268 * 90.00357 * 14 13 12 16 16 H 1.00905 * 110.47048 * 303.88105 * 15 14 13 17 17 C 1.48562 * 110.47473 * 66.41140 * 15 14 13 18 18 C 1.54378 * 104.59487 * 158.15552 * 17 15 14 19 19 C 1.54263 * 105.05991 * 336.14907 * 18 17 15 20 20 C 1.53001 * 110.32333 * 241.10317 * 19 18 17 21 21 N 1.46498 * 110.32065 * 119.00069 * 19 18 17 22 22 C 1.34775 * 120.00625 * 61.45551 * 21 19 18 23 23 O 1.21619 * 119.99717 * 359.97438 * 22 21 19 24 24 C 1.43199 * 120.00443 * 179.97438 * 22 21 19 25 25 C 9.61891 * 107.24425 * 312.92639 * 5 1 2 26 26 C 9.75989 * 118.65525 * 29.01129 * 12 1 2 27 27 C 1.52999 * 109.46799 * 121.20605 * 26 25 24 28 28 C 1.53004 * 109.46749 * 241.20315 * 26 25 24 29 29 C 1.48554 * 110.47370 * 181.20404 * 15 14 13 30 30 C 1.37950 * 120.14365 * 0.02562 * 13 12 5 31 31 H 4.52048 * 14.01903 * 0.02562 * 4 2 1 32 32 H 1.08003 * 120.07693 * 359.97438 * 4 3 2 33 33 H 1.09006 * 109.46679 * 125.00049 * 6 5 4 34 34 H 0.96704 * 113.99961 * 180.02562 * 7 6 5 35 35 H 1.07997 * 119.85283 * 180.28115 * 12 5 4 36 36 H 1.09004 * 109.46727 * 209.99886 * 14 13 12 37 37 H 1.09000 * 109.47724 * 329.99549 * 14 13 12 38 38 H 1.08993 * 110.41275 * 276.93697 * 17 15 14 39 39 H 1.09006 * 110.40821 * 39.25721 * 17 15 14 40 40 H 1.08996 * 110.32243 * 95.04564 * 18 17 15 41 41 H 1.09002 * 110.32378 * 217.25727 * 18 17 15 42 42 H 1.09004 * 109.46769 * 58.54812 * 20 19 18 43 43 H 1.08996 * 109.47058 * 178.54525 * 20 19 18 44 44 H 1.08997 * 109.47287 * 298.55092 * 20 19 18 45 45 H 0.97005 * 119.99775 * 241.44704 * 21 19 18 46 46 H 1.08997 * 109.47200 * 1.20451 * 26 25 24 47 47 H 1.08999 * 109.46879 * 179.97438 * 27 26 25 48 48 H 1.08998 * 109.47258 * 299.99589 * 27 26 25 49 49 H 1.09006 * 109.47375 * 59.99716 * 27 26 25 50 50 H 1.09004 * 109.46904 * 60.00641 * 28 26 25 51 51 H 1.08999 * 109.47014 * 180.02562 * 28 26 25 52 52 H 1.08997 * 109.47381 * 300.00026 * 28 26 25 53 53 H 1.08995 * 110.41406 * 320.62756 * 29 15 14 54 54 H 1.09006 * 110.41265 * 83.07165 * 29 15 14 55 55 H 1.08000 * 120.07058 * 179.97438 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3061 0.8282 -0.8783 5 6 4.6860 0.8238 -0.8737 6 6 5.4440 1.7166 -1.8221 7 8 6.1756 0.9136 -2.7504 8 14 4.2439 2.7994 -2.7485 9 1 4.9908 3.6796 -3.6826 10 1 3.3009 1.9480 -3.5173 11 1 3.4836 3.6340 -1.7839 12 6 5.3750 0.0016 -0.0004 13 6 4.6866 -0.8215 0.8731 14 6 5.4455 -1.7145 1.8206 15 7 5.6921 -0.9968 3.0783 16 1 6.1792 -0.1310 2.9009 17 6 4.4130 -0.7371 3.7879 18 6 4.8220 -0.5214 5.2608 19 6 6.1722 -1.2520 5.4129 20 6 6.0586 -2.3672 6.4543 21 7 7.2227 -0.3052 5.7952 22 6 7.1288 0.3732 6.9560 23 8 6.1717 0.1997 7.6860 24 6 8.1560 1.2983 7.3299 25 6 9.0013 2.0457 7.6357 26 6 10.0571 -7.4870 -4.1544 27 6 10.2843 -6.6867 -5.4385 28 6 11.2319 -8.4422 -3.9342 29 6 6.4652 -1.8476 4.0192 30 6 3.3071 -0.8273 0.8777 31 1 -1.0500 -0.0002 0.0009 32 1 2.7693 1.4704 -1.5609 33 1 6.1362 2.3416 -1.2578 34 1 6.6886 1.4232 -3.3924 35 1 6.4550 0.0051 0.0024 36 1 4.8594 -2.6111 2.0228 37 1 6.3973 -1.9965 1.3705 38 1 3.9333 0.1577 3.3916 39 1 3.7474 -1.5957 3.6981 40 1 4.9414 0.5419 5.4687 41 1 4.0784 -0.9574 5.9280 42 1 5.2822 -3.0697 6.1510 43 1 7.0117 -2.8902 6.5319 44 1 5.8007 -1.9361 7.4216 45 1 7.9860 -0.1666 5.2129 46 1 9.1342 -8.0602 -4.2420 47 1 10.3604 -7.3703 -6.2840 48 1 9.4474 -6.0061 -5.5954 49 1 11.2073 -6.1134 -5.3509 50 1 11.0700 -9.0123 -3.0194 51 1 11.3079 -9.1256 -4.7800 52 1 12.1548 -7.8690 -3.8467 53 1 6.1217 -2.8808 3.9674 54 1 7.5308 -1.7888 3.7971 55 1 2.7709 -1.4705 1.5598 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_275030_14114082_12659054_16591380.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 22:29:12 Heat of formation + Delta-G solvation = 296.535328 kcal Electronic energy + Delta-G solvation = -31454.253290 eV Core-core repulsion = 27242.664788 eV Total energy + Delta-G solvation = -4211.588502 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 369.209 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -43.19507 -41.00357 -40.17771 -37.80914 -36.82788 -35.79500 -35.02150 -33.97767 -33.00731 -31.98412 -31.44991 -30.99692 -28.60328 -28.48355 -27.01973 -26.64006 -24.74832 -24.46404 -23.85429 -22.31794 -21.97892 -21.10519 -20.05611 -19.54366 -19.17768 -18.53518 -17.91112 -17.72093 -17.41747 -17.14340 -16.53779 -16.22897 -16.07536 -15.98203 -15.85085 -15.71438 -15.29032 -14.94932 -14.80681 -14.63429 -14.59777 -14.56217 -14.39499 -14.12050 -13.95965 -13.74937 -13.42670 -13.41642 -13.36846 -13.10231 -12.93874 -12.74572 -12.72240 -12.70778 -12.53592 -12.43462 -12.32458 -12.23399 -12.15583 -11.94372 -11.62547 -11.57161 -10.68617 -10.55256 -10.49979 -10.25182 -10.12630 -9.68158 -9.48191 -2.44063 -0.34626 -0.13495 0.84921 1.05578 1.29020 1.31395 1.32346 1.60550 1.78731 1.80060 2.00217 2.30548 2.46194 2.71517 2.79579 2.87959 2.98121 3.14725 3.20761 3.27129 3.29704 3.32408 3.46116 3.47695 3.60799 3.70980 3.73253 3.84296 3.85809 3.90905 3.95124 4.04199 4.19521 4.25689 4.27913 4.30310 4.36082 4.38359 4.41362 4.48560 4.49449 4.50658 4.52346 4.59515 4.62599 4.68607 4.71400 4.78962 4.96451 5.00905 5.06701 5.09443 5.11315 5.17114 5.24392 5.25357 5.42444 5.65264 6.42803 6.45762 6.68939 7.27055 7.79913 Molecular weight = 369.21amu Principal moments of inertia in cm(-1) A = 0.003536 B = 0.002272 C = 0.001628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 7915.695056 B =12321.273245 C =17189.796550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.202 4.202 3 C -0.002 4.002 4 C -0.106 4.106 5 C -0.086 4.086 6 C -0.052 4.052 7 O -0.551 6.551 8 Si 0.933 3.067 9 H -0.260 1.260 10 H -0.278 1.278 11 H -0.277 1.277 12 C -0.048 4.048 13 C -0.128 4.128 14 C 0.060 3.940 15 N -0.386 5.386 16 H 0.435 0.565 17 C 0.015 3.985 18 C -0.154 4.154 19 C 0.146 3.854 20 C -0.166 4.166 21 N -0.711 5.711 22 C 0.634 3.366 23 O -0.602 6.602 24 C -0.686 4.686 25 C -0.332 4.332 26 C 0.376 3.624 27 C -0.243 4.243 28 C -0.244 4.244 29 C 0.023 3.977 30 C -0.060 4.060 31 H 0.244 0.756 32 H 0.103 0.897 33 H 0.112 0.888 34 H 0.402 0.598 35 H 0.174 0.826 36 H 0.176 0.824 37 H 0.183 0.817 38 H 0.130 0.870 39 H 0.177 0.823 40 H 0.046 0.954 41 H 0.098 0.902 42 H 0.120 0.880 43 H 0.065 0.935 44 H 0.024 0.976 45 H 0.411 0.589 46 H 0.243 0.757 47 H 0.218 0.782 48 H 0.111 0.889 49 H 0.105 0.895 50 H 0.109 0.891 51 H 0.218 0.782 52 H 0.105 0.895 53 H 0.201 0.799 54 H 0.167 0.833 55 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.441 -49.321 -53.946 74.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.202 4.202 3 C -0.002 4.002 4 C -0.125 4.125 5 C -0.087 4.087 6 C -0.166 4.166 7 O -0.360 6.360 8 Si 0.762 3.238 9 H -0.185 1.185 10 H -0.203 1.203 11 H -0.203 1.203 12 C -0.066 4.066 13 C -0.128 4.128 14 C -0.059 4.059 15 N 0.036 4.964 16 H 0.271 0.729 17 C -0.107 4.107 18 C -0.193 4.193 19 C 0.061 3.939 20 C -0.225 4.225 21 N -0.365 5.365 22 C 0.428 3.572 23 O -0.485 6.485 24 C -0.689 4.689 25 C -0.335 4.335 26 C 0.359 3.641 27 C -0.295 4.295 28 C -0.296 4.296 29 C -0.098 4.098 30 C -0.079 4.079 31 H 0.261 0.739 32 H 0.121 0.879 33 H 0.129 0.871 34 H 0.253 0.747 35 H 0.191 0.809 36 H 0.194 0.806 37 H 0.201 0.799 38 H 0.149 0.851 39 H 0.195 0.805 40 H 0.065 0.935 41 H 0.117 0.883 42 H 0.138 0.862 43 H 0.084 0.916 44 H 0.044 0.956 45 H 0.248 0.752 46 H 0.260 0.740 47 H 0.233 0.767 48 H 0.129 0.871 49 H 0.124 0.876 50 H 0.128 0.872 51 H 0.233 0.767 52 H 0.124 0.876 53 H 0.219 0.781 54 H 0.184 0.816 55 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 10.758 -49.709 -53.673 73.943 hybrid contribution -0.725 1.631 0.106 1.788 sum 10.033 -48.078 -53.567 72.675 Atomic orbital electron populations 1.25822 0.96990 0.97306 0.97266 1.20524 0.93104 1.03250 1.03293 1.15983 0.86309 0.99194 0.98713 1.21346 0.94844 0.98182 0.98084 1.19281 0.91647 0.99477 0.98248 1.24166 1.00804 0.97684 0.93954 1.86371 1.65874 1.36547 1.47234 0.85922 0.79434 0.78326 0.80070 1.18491 1.20308 1.20278 1.21447 1.02177 0.91407 0.91542 1.19592 0.92510 1.00440 1.00273 1.22897 1.08152 0.95412 0.79397 1.46436 1.16289 1.18978 1.14746 0.72874 1.24689 0.86015 1.10208 0.89737 1.23068 0.97417 1.01475 0.97385 1.21538 0.87125 0.89156 0.96128 1.22263 1.04147 0.97350 0.98693 1.45856 1.26197 1.43286 1.21171 1.15924 0.82630 0.77817 0.80831 1.90573 1.35384 1.68250 1.54334 1.26131 1.08752 1.12410 1.21590 1.68021 0.97678 0.90508 0.77281 1.34751 1.06994 0.67954 0.54355 1.23836 1.08266 1.06024 0.91364 1.23836 0.98652 0.98363 1.08723 1.24990 1.02673 0.99315 0.82778 1.21572 0.94013 0.95974 0.96300 0.73941 0.87890 0.87057 0.74742 0.80859 0.80595 0.79947 0.85146 0.80509 0.93494 0.88310 0.86201 0.91584 0.95637 0.75221 0.74035 0.76673 0.87065 0.87616 0.87191 0.76657 0.87646 0.78147 0.81561 0.81633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 3.11 19.25 74.32 1.43 4.54 16 2 C -0.20 3.94 13.24 30.02 0.40 4.33 16 3 C 0.00 0.05 5.72 -21.41 -0.12 -0.07 16 4 C -0.11 2.45 8.37 22.52 0.19 2.64 16 5 C -0.09 2.53 5.38 -19.90 -0.11 2.42 16 6 C -0.05 1.50 2.79 71.24 0.20 1.70 16 7 O -0.55 16.51 12.81 -148.98 -1.91 14.60 16 8 Si 0.93 -18.53 25.13 68.60 1.72 -16.81 16 9 H -0.26 4.71 7.11 99.48 0.71 5.42 16 10 H -0.28 4.22 7.04 99.48 0.70 4.92 16 11 H -0.28 4.13 7.11 99.48 0.71 4.84 16 12 C -0.05 1.90 9.33 22.32 0.21 2.11 16 13 C -0.13 5.83 4.92 -19.90 -0.10 5.73 16 14 C 0.06 -3.49 4.78 85.56 0.41 -3.08 16 15 N -0.39 20.39 0.63 -886.06 -0.55 19.84 16 16 H 0.43 -22.86 8.60 -89.69 -0.77 -23.63 16 17 C 0.02 -0.67 5.08 86.45 0.44 -0.23 16 18 C -0.15 4.01 5.48 31.49 0.17 4.18 16 19 C 0.15 -3.81 1.01 4.50 0.00 -3.80 16 20 C -0.17 3.27 8.16 71.98 0.59 3.85 16 21 N -0.71 6.36 5.09 -426.34 -2.17 4.19 16 22 C 0.63 9.98 6.81 85.49 0.58 10.56 16 23 O -0.60 -12.78 14.37 -4.09 -0.06 -12.84 16 24 C -0.69 -22.10 13.59 30.07 0.41 -21.69 16 25 C -0.33 -12.55 24.40 74.37 1.81 -10.74 16 26 C 0.38 -28.89 11.89 30.60 0.36 -28.53 16 27 C -0.24 17.38 9.91 71.98 0.71 18.10 16 28 C -0.24 17.34 9.91 71.98 0.71 18.05 16 29 C 0.02 -1.13 5.54 86.45 0.48 -0.65 16 30 C -0.06 2.29 8.30 22.52 0.19 2.47 16 31 H 0.24 -6.10 7.80 -4.42 -0.03 -6.13 16 32 H 0.10 -1.90 4.86 -2.91 -0.01 -1.91 16 33 H 0.11 -3.68 7.96 -2.38 -0.02 -3.70 16 34 H 0.40 -14.55 8.74 -74.05 -0.65 -15.20 16 35 H 0.17 -8.09 8.06 -2.91 -0.02 -8.12 16 36 H 0.18 -11.28 7.84 -2.39 -0.02 -11.30 16 37 H 0.18 -11.90 8.08 -2.39 -0.02 -11.92 16 38 H 0.13 -5.59 7.77 -2.39 -0.02 -5.61 16 39 H 0.18 -9.32 7.65 -2.38 -0.02 -9.34 16 40 H 0.05 -0.61 7.31 -2.39 -0.02 -0.63 16 41 H 0.10 -2.19 7.71 -2.39 -0.02 -2.21 16 42 H 0.12 -3.65 8.12 -2.39 -0.02 -3.67 16 43 H 0.07 -1.27 8.14 -2.39 -0.02 -1.29 16 44 H 0.02 -0.07 6.30 -2.39 -0.02 -0.09 16 45 H 0.41 -6.07 8.24 -92.70 -0.76 -6.83 16 46 H 0.24 -20.50 8.14 -2.39 -0.02 -20.52 16 47 H 0.22 -16.21 8.14 -2.39 -0.02 -16.23 16 48 H 0.11 -7.59 8.14 -2.39 -0.02 -7.61 16 49 H 0.11 -7.08 8.14 -2.38 -0.02 -7.10 16 50 H 0.11 -7.42 8.14 -2.38 -0.02 -7.44 16 51 H 0.22 -16.15 8.14 -2.39 -0.02 -16.17 16 52 H 0.11 -7.01 8.14 -2.39 -0.02 -7.03 16 53 H 0.20 -11.67 7.65 -2.39 -0.02 -11.69 16 54 H 0.17 -8.75 7.75 -2.38 -0.02 -8.77 16 55 H 0.17 -7.24 7.83 -2.91 -0.02 -7.26 16 Total: 1.00 -190.84 466.58 5.49 -185.36 By element: Atomic # 1 Polarization: -205.72 SS G_CDS: -0.52 Total: -206.24 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: 8.97 Total: 11.89 kcal Atomic # 7 Polarization: 26.75 SS G_CDS: -2.72 Total: 24.03 kcal Atomic # 8 Polarization: 3.73 SS G_CDS: -1.97 Total: 1.77 kcal Atomic # 14 Polarization: -18.53 SS G_CDS: 1.72 Total: -16.81 kcal Total: -190.84 5.49 -185.36 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_275030_14114082_12659054_16591380.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 481.892 kcal (2) G-P(sol) polarization free energy of solvation -190.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 291.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -185.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 296.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds