Wall clock time and date at job start Fri Mar 5 2021 22:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39511 * 120.14011 * 324.75456 * 3 2 1 5 5 C 1.37999 * 119.85294 * 180.02562 * 4 3 2 6 6 C 1.50707 * 119.92701 * 180.02562 * 5 4 3 7 7 O 1.42903 * 109.46442 * 244.99885 * 6 5 4 8 8 Si 1.86293 * 109.47256 * 4.99451 * 6 5 4 9 9 H 1.48499 * 109.47512 * 300.00264 * 8 6 5 10 10 H 1.48505 * 109.47075 * 60.00390 * 8 6 5 11 11 H 1.48499 * 109.47038 * 180.02562 * 8 6 5 12 12 C 1.38318 * 120.14341 * 0.26887 * 5 4 3 13 13 C 1.38364 * 120.28405 * 359.45476 * 12 5 4 14 14 C 1.50705 * 119.92934 * 180.27131 * 13 12 5 15 15 N 1.46900 * 109.47056 * 270.27127 * 14 13 12 16 16 C 1.48531 * 111.00421 * 287.39675 * 15 14 13 17 17 C 1.54935 * 103.22893 * 200.28172 * 16 15 14 18 18 C 1.54601 * 102.92297 * 37.41126 * 17 16 15 19 19 C 1.52994 * 110.30795 * 219.12768 * 18 17 16 20 20 N 1.46502 * 110.30814 * 96.95867 * 18 17 16 21 21 C 1.34773 * 119.99628 * 64.28448 * 20 18 17 22 22 O 1.21614 * 120.00677 * 0.02562 * 21 20 18 23 23 C 1.43202 * 119.99576 * 180.02562 * 21 20 18 24 24 C 9.89124 * 87.10265 * 99.76434 * 12 1 2 25 25 C 9.93705 * 103.27785 * 190.13190 * 13 1 2 26 26 C 1.53004 * 117.49367 * 294.16698 * 25 24 23 27 27 C 1.53001 * 117.49595 * 225.51151 * 25 24 23 28 28 C 1.47906 * 110.99715 * 169.99853 * 15 14 13 29 29 C 1.37950 * 120.14401 * 0.54857 * 13 12 5 30 30 H 4.52048 * 14.02077 * 359.97438 * 4 2 1 31 31 H 1.07996 * 120.07877 * 0.04523 * 4 3 2 32 32 H 1.08999 * 109.47345 * 124.99955 * 6 5 4 33 33 H 0.96700 * 114.00311 * 60.00230 * 7 6 5 34 34 H 1.08002 * 119.85879 * 179.72440 * 12 5 4 35 35 H 1.08998 * 109.47140 * 30.27162 * 14 13 12 36 36 H 1.08998 * 109.46902 * 150.27237 * 14 13 12 37 37 H 1.09006 * 110.66268 * 318.71253 * 16 15 14 38 38 H 1.08996 * 110.66539 * 81.84054 * 16 15 14 39 39 H 1.08997 * 110.72057 * 279.05671 * 17 16 15 40 40 H 1.08998 * 110.87695 * 155.83797 * 17 16 15 41 41 H 1.09004 * 109.46915 * 175.71533 * 19 18 17 42 42 H 1.08998 * 109.47146 * 295.71240 * 19 18 17 43 43 H 1.09002 * 109.47295 * 55.71818 * 19 18 17 44 44 H 0.96998 * 120.00190 * 244.28434 * 20 18 17 45 45 H 1.08995 * 115.55406 * 79.83350 * 25 24 23 46 46 H 1.09000 * 117.50261 * 0.02562 * 26 25 24 47 47 H 1.08998 * 117.49633 * 145.02611 * 26 25 24 48 48 H 1.09000 * 117.49283 * 214.98145 * 27 25 24 49 49 H 1.08999 * 117.50150 * 359.96716 * 27 25 24 50 50 H 1.08998 * 109.91641 * 265.19920 * 28 15 14 51 51 H 1.08997 * 109.91773 * 26.29826 * 28 15 14 52 52 H 1.07999 * 120.07523 * 179.74929 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3070 -0.9844 0.6962 5 6 4.6869 -0.9778 0.6927 6 6 5.4458 -2.0414 1.4438 7 8 6.1768 -1.4390 2.5138 8 14 4.2470 -3.2883 2.1355 9 1 3.3032 -2.6084 3.0587 10 1 3.4872 -3.9143 1.0236 11 1 4.9947 -4.3359 2.8761 12 6 5.3751 0.0057 0.0055 13 6 4.6858 0.9821 -0.6917 14 6 5.4437 2.0464 -1.4428 15 7 5.6890 3.1912 -0.5555 16 6 4.4376 3.9529 -0.3108 17 6 4.9511 5.3375 0.1577 18 6 6.2022 5.5585 -0.7232 19 6 7.3170 6.2156 0.0930 20 7 5.8664 6.3850 -1.8852 21 6 5.4654 7.6599 -1.7120 22 8 5.3826 8.1245 -0.5911 23 6 5.1366 8.4677 -2.8478 24 6 4.8832 1.6806 -9.7305 25 6 4.5323 9.9652 -4.9374 26 6 3.4269 10.1305 -3.8926 27 6 3.3489 10.8937 -5.2172 28 6 6.6299 4.1497 -1.1750 29 6 3.3063 0.9869 -0.6961 30 1 -1.0500 -0.0004 0.0009 31 1 2.7709 -1.7505 1.2366 32 1 6.1386 -2.5405 0.7662 33 1 5.6227 -0.9758 3.1569 34 1 6.4551 0.0091 0.0094 35 1 6.3960 1.6413 -1.7849 36 1 4.8575 2.3718 -2.3021 37 1 3.8592 4.0479 -1.2299 38 1 3.8447 3.4778 0.4707 39 1 5.2222 5.3114 1.2131 40 1 4.2065 6.1114 -0.0289 41 1 8.2160 6.2956 -0.5182 42 1 7.0003 7.2108 0.4053 43 1 7.5289 5.6088 0.9733 44 1 5.9328 6.0147 -2.7793 45 1 5.4965 10.4281 -4.7274 46 1 2.7398 9.2963 -3.7504 47 1 3.6637 10.7026 -2.9955 48 1 3.5345 11.9674 -5.1911 49 1 2.6105 10.5619 -5.9472 50 1 7.6456 3.9439 -0.8373 51 1 6.5770 4.0728 -2.2609 52 1 2.7695 1.7519 -1.2373 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_275030_14114082_12659064_16591380.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 22:35:07 Heat of formation + Delta-G solvation = 574.260028 kcal Electronic energy + Delta-G solvation = -31112.627265 eV Core-core repulsion = 26954.049027 eV Total energy + Delta-G solvation = -4158.578238 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 366.186 amu Computer time = 3.20 seconds Orbital eigenvalues (eV) -41.21754 -40.47791 -38.42324 -37.64627 -35.62015 -35.20098 -34.59723 -33.16503 -31.82399 -31.23012 -30.59096 -27.70378 -26.79276 -26.03394 -24.96349 -24.32492 -23.78469 -22.57642 -22.38155 -21.56039 -20.58283 -20.14806 -19.55391 -19.31568 -18.03078 -17.37492 -17.17619 -16.86124 -16.64573 -16.18208 -15.93722 -15.57456 -15.44705 -15.34359 -15.20577 -14.91264 -14.71522 -14.59013 -14.22507 -14.17792 -13.95492 -13.53406 -13.41668 -13.17629 -13.00020 -12.94000 -12.49998 -12.39544 -12.36754 -12.19466 -12.15265 -12.00335 -11.93172 -11.89527 -11.78816 -11.67595 -11.43603 -11.19434 -10.39884 -10.21042 -9.91104 -9.52265 -9.46830 -9.45482 -9.36484 -7.78497 -6.25631 -6.18529 -3.09381 -3.09336 -3.08145 -0.07897 0.18104 1.17546 1.42818 1.50123 1.64646 1.71644 1.90233 1.93258 2.74096 3.08617 3.23165 3.27642 3.38643 3.49344 3.60276 3.66160 3.75905 3.86180 3.99868 4.05994 4.18705 4.24215 4.29166 4.33632 4.35481 4.38847 4.47028 4.54594 4.64252 4.68391 4.72793 4.74977 4.79733 4.83361 4.91801 4.95777 4.98999 5.05575 5.13929 5.26514 5.33479 5.34665 5.41353 5.49424 5.51374 5.71152 5.86670 5.88542 6.03370 6.06278 6.33407 6.47995 6.51995 6.55295 6.67554 6.97221 7.62039 8.63564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.199 4.199 3 C -0.001 4.001 4 C -0.112 4.112 5 C -0.118 4.118 6 C -0.070 4.070 7 O -0.552 6.552 8 Si 0.970 3.030 9 H -0.272 1.272 10 H -0.248 1.248 11 H -0.270 1.270 12 C -0.057 4.057 13 C -0.071 4.071 14 C 0.087 3.913 15 N -0.507 5.507 16 C 0.064 3.936 17 C -0.127 4.127 18 C 0.167 3.833 19 C -0.147 4.147 20 N -0.756 5.756 21 C 0.261 3.739 22 O -0.747 6.747 23 C -0.372 4.372 24 C 2.000 2.000 25 C -0.538 4.538 26 C -0.158 4.158 27 C -0.256 4.256 28 C 0.062 3.938 29 C -0.087 4.087 30 H 0.255 0.745 31 H 0.124 0.876 32 H 0.141 0.859 33 H 0.387 0.613 34 H 0.145 0.855 35 H 0.119 0.881 36 H 0.062 0.938 37 H 0.044 0.956 38 H 0.081 0.919 39 H 0.054 0.946 40 H 0.015 0.985 41 H 0.051 0.949 42 H 0.015 0.985 43 H 0.074 0.926 44 H 0.382 0.618 45 H -0.087 1.087 46 H 0.048 0.952 47 H -0.057 1.057 48 H -0.024 1.024 49 H 0.078 0.922 50 H 0.103 0.897 51 H 0.074 0.926 52 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.017 -74.902 -67.115 100.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.199 4.199 3 C -0.001 4.001 4 C -0.130 4.130 5 C -0.118 4.118 6 C -0.181 4.181 7 O -0.359 6.359 8 Si 0.795 3.205 9 H -0.197 1.197 10 H -0.171 1.171 11 H -0.195 1.195 12 C -0.075 4.075 13 C -0.071 4.071 14 C -0.040 4.040 15 N -0.232 5.232 16 C -0.063 4.063 17 C -0.167 4.167 18 C 0.080 3.920 19 C -0.206 4.206 20 N -0.409 5.409 21 C 0.095 3.905 22 O -0.658 6.658 23 C -0.384 4.384 24 C 2.000 2.000 25 C -0.556 4.556 26 C -0.195 4.195 27 C -0.292 4.292 28 C -0.066 4.066 29 C -0.106 4.106 30 H 0.272 0.728 31 H 0.142 0.858 32 H 0.158 0.842 33 H 0.236 0.764 34 H 0.163 0.837 35 H 0.137 0.863 36 H 0.080 0.920 37 H 0.063 0.937 38 H 0.099 0.901 39 H 0.073 0.927 40 H 0.034 0.966 41 H 0.070 0.930 42 H 0.035 0.965 43 H 0.092 0.908 44 H 0.215 0.785 45 H -0.068 1.068 46 H 0.066 0.934 47 H -0.039 1.039 48 H -0.006 1.006 49 H 0.096 0.904 50 H 0.121 0.879 51 H 0.092 0.908 52 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.150 -75.692 -65.842 100.329 hybrid contribution -0.897 2.910 2.098 3.698 sum 0.253 -72.783 -63.744 96.751 Atomic orbital electron populations 1.25799 0.96659 0.97353 0.97379 1.20497 0.92859 1.03261 1.03271 1.15934 0.86813 0.97036 1.00273 1.21174 0.94078 0.98464 0.99269 1.20280 0.92648 0.98816 1.00058 1.24952 1.02833 0.98681 0.91624 1.86492 1.37574 1.74204 1.37621 0.85410 0.77025 0.77774 0.80251 1.19683 1.17146 1.19520 1.21124 1.01012 0.92055 0.93331 1.19694 0.92485 0.95989 0.98975 1.21368 1.01273 0.88716 0.92643 1.64824 1.08286 1.06861 1.43190 1.22958 0.92489 0.91138 0.99751 1.22729 0.98149 0.96755 0.99062 1.20866 0.92703 0.91115 0.87301 1.22116 0.98019 1.00452 0.99984 1.45776 1.76429 1.12151 1.06519 1.23031 0.87821 0.85255 0.94415 1.90365 1.72506 1.75630 1.27346 1.85562 1.41203 0.50686 0.60930 1.99990 0.00000 0.00006 0.00003 1.45622 0.77189 1.28587 1.04237 1.21064 1.13797 0.98194 0.86412 1.22682 1.15469 0.91051 0.99992 1.22960 0.97978 0.87204 0.98457 1.21209 0.94033 0.96778 0.98586 0.72848 0.85807 0.84152 0.76427 0.83742 0.86293 0.91952 0.93740 0.90059 0.92744 0.96589 0.92995 0.96547 0.90751 0.78485 1.06839 0.93399 1.03863 1.00627 0.90403 0.87884 0.90752 0.85851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.19 19.25 74.32 1.43 1.24 16 2 C -0.20 -1.07 13.24 30.01 0.40 -0.67 16 3 C 0.00 0.00 5.72 -21.41 -0.12 -0.13 16 4 C -0.11 -0.26 8.37 22.52 0.19 -0.08 16 5 C -0.12 0.04 5.35 -19.90 -0.11 -0.07 16 6 C -0.07 0.20 2.80 71.24 0.20 0.40 16 7 O -0.55 -0.61 12.83 -148.98 -1.91 -2.52 16 8 Si 0.97 -1.70 25.13 68.60 1.72 0.03 16 9 H -0.27 -0.46 7.04 99.48 0.70 0.24 16 10 H -0.25 0.65 7.11 99.48 0.71 1.36 16 11 H -0.27 -0.30 7.11 99.48 0.71 0.41 16 12 C -0.06 0.03 9.33 22.32 0.21 0.24 16 13 C -0.07 -0.04 5.16 -19.90 -0.10 -0.14 16 14 C 0.09 -0.04 4.85 85.56 0.42 0.38 16 15 N -0.51 -6.11 5.23 -887.56 -4.65 -10.76 16 16 C 0.06 1.34 5.67 86.65 0.49 1.83 16 17 C -0.13 -4.69 5.85 31.80 0.19 -4.50 16 18 C 0.17 5.85 0.94 4.48 0.00 5.86 16 19 C -0.15 -5.75 8.15 71.98 0.59 -5.16 16 20 N -0.76 -34.84 5.14 -426.41 -2.19 -37.04 16 21 C 0.26 17.54 6.84 85.49 0.58 18.13 16 22 O -0.75 -56.96 13.97 -4.08 -0.06 -57.02 16 23 C -0.37 -27.84 19.17 69.07 1.32 -26.51 16 24 C 2.00 -305.23 36.32 113.37 4.12 -301.12 16 25 C -0.54 -40.78 13.07 30.60 0.40 -40.38 16 26 C -0.16 -11.92 7.61 30.62 0.23 -11.68 16 27 C -0.26 -17.25 10.53 30.62 0.32 -16.93 16 28 C 0.06 1.00 6.12 86.45 0.53 1.53 16 29 C -0.09 -0.26 8.53 22.52 0.19 -0.07 16 30 H 0.26 -1.80 7.80 -4.42 -0.03 -1.83 16 31 H 0.12 0.15 4.86 -2.91 -0.01 0.14 16 32 H 0.14 -1.07 7.96 -2.39 -0.02 -1.09 16 33 H 0.39 -1.05 8.70 -74.06 -0.64 -1.69 16 34 H 0.14 -0.42 8.06 -2.91 -0.02 -0.44 16 35 H 0.12 -0.86 8.03 -2.39 -0.02 -0.88 16 36 H 0.06 -0.22 7.77 -2.39 -0.02 -0.24 16 37 H 0.04 0.89 7.81 -2.38 -0.02 0.87 16 38 H 0.08 1.57 7.85 -2.39 -0.02 1.55 16 39 H 0.05 2.00 7.84 -2.39 -0.02 1.99 16 40 H 0.02 0.78 6.81 -2.39 -0.02 0.76 16 41 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.02 0.84 6.03 -2.39 -0.01 0.83 16 43 H 0.07 2.31 8.11 -2.39 -0.02 2.29 16 44 H 0.38 14.41 8.06 -92.71 -0.75 13.66 16 45 H -0.09 -7.36 8.14 -2.39 -0.02 -7.38 16 46 H 0.05 3.41 8.11 -2.39 -0.02 3.39 16 47 H -0.06 -4.73 8.09 -2.39 -0.02 -4.75 16 48 H -0.02 -1.65 8.14 -2.39 -0.02 -1.67 16 49 H 0.08 4.44 8.14 -2.39 -0.02 4.42 16 50 H 0.10 1.32 7.68 -2.39 -0.02 1.30 16 51 H 0.07 0.73 7.10 -2.39 -0.02 0.71 16 52 H 0.12 0.37 8.06 -2.91 -0.02 0.35 16 Total: 0.00 -473.75 463.71 4.71 -469.04 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: 0.31 Total: 16.09 kcal Atomic # 6 Polarization: -389.31 SS G_CDS: 11.48 Total: -377.83 kcal Atomic # 7 Polarization: -40.95 SS G_CDS: -6.84 Total: -47.79 kcal Atomic # 8 Polarization: -57.57 SS G_CDS: -1.97 Total: -59.54 kcal Atomic # 14 Polarization: -1.70 SS G_CDS: 1.72 Total: 0.03 kcal Total: -473.75 4.71 -469.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_275030_14114082_12659064_16591380.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1043.304 kcal (2) G-P(sol) polarization free energy of solvation -473.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 569.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -469.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 574.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.20 seconds