Wall clock time and date at job start Fri Mar 5 2021 18:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39949 * 120.46405 * 270.66078 * 3 2 1 5 5 C 1.38257 * 118.37255 * 180.02562 * 4 3 2 6 6 C 1.39458 * 119.20594 * 0.02562 * 5 4 3 7 7 C 1.47985 * 119.56744 * 179.97438 * 6 5 4 8 8 O 1.21541 * 120.00127 * 359.97438 * 7 6 5 9 9 N 1.34783 * 119.99927 * 180.02562 * 7 6 5 10 10 C 1.46492 * 119.99909 * 180.02562 * 9 7 6 11 11 C 1.53003 * 110.35836 * 57.85419 * 10 9 7 12 12 C 1.54601 * 110.30677 * 295.71181 * 10 9 7 13 13 C 1.54941 * 102.92081 * 263.04307 * 12 10 9 14 14 N 1.48534 * 103.22947 * 322.58480 * 13 12 10 15 15 C 1.46900 * 110.99998 * 159.71750 * 14 13 12 16 16 C 1.50705 * 109.47056 * 52.60642 * 15 14 13 17 17 C 1.37950 * 119.92608 * 89.99462 * 16 15 14 18 18 C 1.39557 * 119.85395 * 180.02562 * 17 16 15 19 19 C 1.43196 * 120.14050 * 179.97438 * 18 17 16 20 20 C 9.95743 * 146.06874 * 238.61324 * 9 1 2 21 21 C 1.39511 * 119.71938 * 0.02562 * 18 17 16 22 22 C 1.37999 * 119.85294 * 0.02562 * 21 18 17 23 23 C 1.50707 * 119.92701 * 180.02562 * 22 21 18 24 24 O 1.42903 * 109.46442 * 244.99885 * 23 22 21 25 25 Si 1.86293 * 109.47256 * 4.99451 * 23 22 21 26 26 H 1.48499 * 109.47512 * 300.00264 * 25 23 22 27 27 H 1.48505 * 109.47075 * 60.00390 * 25 23 22 28 28 H 1.48499 * 109.47038 * 180.02562 * 25 23 22 29 29 C 1.38318 * 120.14341 * 0.26887 * 22 21 18 30 30 C 1.47906 * 105.81831 * 39.20835 * 14 13 12 31 31 N 1.32853 * 120.85888 * 0.27195 * 6 5 4 32 32 C 1.31264 * 121.79040 * 359.43210 * 31 6 5 33 33 H 4.52915 * 13.94512 * 0.02562 * 4 2 1 34 34 H 1.07999 * 120.81544 * 0.02562 * 4 3 2 35 35 H 1.07995 * 120.40086 * 180.02562 * 5 4 3 36 36 H 0.97000 * 119.99943 * 359.97438 * 9 7 6 37 37 H 1.08996 * 109.47048 * 182.14104 * 11 10 9 38 38 H 1.08994 * 109.46836 * 302.14210 * 11 10 9 39 39 H 1.09004 * 109.46561 * 62.14224 * 11 10 9 40 40 H 1.08999 * 110.72215 * 21.39991 * 12 10 9 41 41 H 1.08997 * 110.72492 * 144.51192 * 12 10 9 42 42 H 1.09004 * 110.66502 * 204.14958 * 13 12 10 43 43 H 1.09001 * 110.66582 * 81.01913 * 13 12 10 44 44 H 1.08998 * 109.47174 * 292.60629 * 15 14 13 45 45 H 1.08998 * 109.47175 * 172.60365 * 15 14 13 46 46 H 1.07999 * 120.07523 * 0.02654 * 17 16 15 47 47 H 9.76018 * 142.84899 * 235.21086 * 10 1 2 48 48 H 1.07996 * 120.07877 * 180.02562 * 21 18 17 49 49 H 1.08999 * 109.47345 * 124.99955 * 23 22 21 50 50 H 0.96700 * 114.00311 * 60.00230 * 24 23 22 51 51 H 1.08002 * 119.85879 * 179.72440 * 29 22 21 52 52 H 1.08994 * 109.91782 * 94.02106 * 30 14 13 53 53 H 1.08998 * 109.91579 * 215.31720 * 30 14 13 54 54 H 1.08002 * 119.65289 * 180.29030 * 32 31 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3155 -0.0130 1.2062 5 6 4.6972 -0.0112 1.1558 6 6 5.3328 0.0045 -0.0855 7 6 6.8112 0.0070 -0.1488 8 8 7.4635 -0.0040 0.8767 9 7 7.4346 0.0226 -1.3437 10 6 8.8981 0.0246 -1.4064 11 6 9.4636 -1.1988 -0.6821 12 6 9.4601 1.3236 -0.7844 13 6 9.6979 2.2255 -2.0217 14 7 10.1781 1.2694 -3.0520 15 6 10.0052 1.8202 -4.4027 16 6 10.6385 3.1860 -4.4731 17 6 11.9622 3.3127 -4.8402 18 6 12.5473 4.5780 -4.9044 19 6 13.9210 4.7166 -5.2843 20 6 15.0496 4.8396 -5.5814 21 6 11.7885 5.7073 -4.5959 22 6 10.4656 5.5668 -4.2290 23 6 9.6441 6.7856 -3.8959 24 8 9.2681 6.7444 -2.5179 25 14 10.6501 8.3199 -4.2194 26 1 11.8705 8.2992 -3.3736 27 1 11.0410 8.3627 -5.6515 28 1 9.8409 9.5208 -3.8906 29 6 9.8933 4.3094 -4.1614 30 6 9.3703 0.0435 -2.8721 31 7 4.6282 0.0230 -1.2116 32 6 3.3156 0.0164 -1.2063 33 1 -1.0501 -0.0005 0.0000 34 1 2.7965 -0.0245 2.1533 35 1 5.2773 -0.0219 2.0666 36 1 6.9140 0.0318 -2.1622 37 1 10.5527 -1.1631 -0.7046 38 1 9.1213 -1.1986 0.3527 39 1 9.1194 -2.1061 -1.1785 40 1 8.7312 1.7759 -0.1119 41 1 10.3959 1.1274 -0.2612 42 1 10.4587 2.9767 -1.8096 43 1 8.7677 2.6972 -2.3384 44 1 8.9420 1.9007 -4.6290 45 1 10.4821 1.1608 -5.1278 46 1 12.5445 2.4346 -5.0775 47 1 16.0569 4.9440 -5.8575 48 1 12.2352 6.6894 -4.6441 49 1 8.7484 6.8009 -4.5168 50 1 10.0168 6.7290 -1.9061 51 1 8.8588 4.2044 -3.8695 52 1 8.5088 0.0653 -3.5395 53 1 9.9801 -0.8364 -3.0771 54 1 2.7774 0.0273 -2.1427 RHF calculation, no. of doubly occupied orbitals= 74 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_275030_14114082_14124148_16591380.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 18:48:34 Heat of formation + Delta-G solvation = 117.116092 kcal Electronic energy + Delta-G solvation = -36949.983770 eV Core-core repulsion = 32321.477951 eV Total energy + Delta-G solvation = -4628.505819 eV No. of doubly occupied orbitals = 74 Molecular weight (most abundant/longest-lived isotopes) = 403.181 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -42.03245 -41.25478 -40.67014 -39.29831 -37.77956 -36.22432 -35.47384 -34.73234 -33.66227 -33.30711 -32.31805 -31.51586 -31.10793 -30.68312 -27.73869 -26.88770 -26.48792 -25.59822 -24.73813 -24.21022 -23.16945 -22.37543 -21.42894 -20.58581 -20.16116 -19.63148 -19.24942 -18.09961 -17.88996 -17.44244 -17.27799 -16.98997 -16.61477 -16.56469 -16.40145 -16.24271 -16.21265 -15.96685 -15.67401 -15.36582 -15.16883 -14.98281 -14.78505 -14.71005 -14.39746 -14.34858 -14.11718 -14.00707 -13.71975 -13.59420 -13.26949 -13.15065 -13.06990 -12.68985 -12.53274 -12.47700 -12.39267 -12.27900 -12.21234 -12.06695 -11.99785 -11.96710 -11.88553 -11.73231 -11.46602 -11.20365 -10.97474 -10.67354 -10.45881 -10.25620 -9.94734 -9.87710 -9.57542 -9.39939 -0.82104 -0.14155 0.05647 0.15021 1.11499 1.33362 1.38034 1.45873 1.65354 1.71519 1.84567 1.85995 1.93825 2.15277 2.76716 2.85069 2.89877 3.12855 3.21777 3.23227 3.33175 3.47390 3.56317 3.64631 3.67681 3.71404 3.74380 3.87447 3.89423 3.97094 4.09414 4.16575 4.19298 4.25329 4.31205 4.34023 4.45065 4.49469 4.58921 4.61632 4.65803 4.72262 4.76299 4.79328 4.83745 4.86853 4.89909 4.90847 5.02561 5.05961 5.08166 5.09881 5.28069 5.29788 5.30022 5.38206 5.42655 5.46617 5.78358 5.82704 5.93260 6.27487 6.45550 6.51927 6.60435 6.63683 7.04860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.210 4.210 3 C -0.014 4.014 4 C -0.061 4.061 5 C -0.111 4.111 6 C 0.061 3.939 7 C 0.573 3.427 8 O -0.551 6.551 9 N -0.693 5.693 10 C 0.165 3.835 11 C -0.154 4.154 12 C -0.121 4.121 13 C 0.044 3.956 14 N -0.512 5.512 15 C 0.086 3.914 16 C -0.079 4.079 17 C -0.073 4.073 18 C 0.001 3.999 19 C -0.200 4.200 20 C -0.151 4.151 21 C -0.113 4.113 22 C -0.117 4.117 23 C -0.071 4.071 24 O -0.548 6.548 25 Si 0.970 3.030 26 H -0.258 1.258 27 H -0.260 1.260 28 H -0.269 1.269 29 C -0.074 4.074 30 C 0.040 3.960 31 N -0.461 5.461 32 C 0.118 3.882 33 H 0.260 0.740 34 H 0.166 0.834 35 H 0.157 0.843 36 H 0.415 0.585 37 H 0.077 0.923 38 H 0.059 0.941 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.079 0.921 42 H 0.078 0.922 43 H 0.049 0.951 44 H 0.061 0.939 45 H 0.099 0.901 46 H 0.135 0.865 47 H 0.256 0.744 48 H 0.124 0.876 49 H 0.131 0.869 50 H 0.388 0.612 51 H 0.135 0.865 52 H 0.069 0.931 53 H 0.105 0.895 54 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.869 -1.080 -2.828 4.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.211 4.211 3 C -0.017 4.017 4 C -0.086 4.086 5 C -0.131 4.131 6 C -0.076 4.076 7 C 0.358 3.642 8 O -0.429 6.429 9 N -0.345 5.345 10 C 0.079 3.921 11 C -0.213 4.213 12 C -0.160 4.160 13 C -0.083 4.083 14 N -0.236 5.236 15 C -0.041 4.041 16 C -0.080 4.080 17 C -0.092 4.092 18 C 0.001 3.999 19 C -0.200 4.200 20 C -0.168 4.168 21 C -0.131 4.131 22 C -0.118 4.118 23 C -0.182 4.182 24 O -0.355 6.355 25 Si 0.795 3.205 26 H -0.182 1.182 27 H -0.184 1.184 28 H -0.194 1.194 29 C -0.093 4.093 30 C -0.088 4.088 31 N -0.171 5.171 32 C -0.043 4.043 33 H 0.276 0.724 34 H 0.184 0.816 35 H 0.174 0.826 36 H 0.254 0.746 37 H 0.096 0.904 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.098 0.902 42 H 0.096 0.904 43 H 0.068 0.932 44 H 0.079 0.921 45 H 0.118 0.882 46 H 0.153 0.847 47 H 0.272 0.728 48 H 0.142 0.858 49 H 0.149 0.851 50 H 0.237 0.763 51 H 0.153 0.847 52 H 0.087 0.913 53 H 0.123 0.877 54 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -2.414 -0.442 -3.271 4.089 hybrid contribution -1.055 -0.069 0.650 1.241 sum -3.469 -0.512 -2.621 4.378 Atomic orbital electron populations 1.25904 0.96564 0.94924 0.95815 1.19872 0.92010 1.04603 1.04615 1.17334 0.88788 1.00451 0.95080 1.21962 0.93134 0.94440 0.99080 1.22164 0.95066 0.96828 0.99081 1.21249 0.94066 1.01773 0.90471 1.17933 0.86042 0.76203 0.84021 1.90775 1.66243 1.50787 1.35046 1.46034 1.06899 1.73071 1.08483 1.21215 0.78518 0.96210 0.96149 1.22147 1.01676 0.96164 1.01267 1.22798 1.01339 0.94633 0.97201 1.23194 0.98931 0.95118 0.91106 1.64995 1.51648 1.04112 1.02834 1.21314 0.99543 0.91905 0.91327 1.19746 0.93603 0.95252 0.99356 1.21215 0.94499 0.96040 0.97429 1.15994 0.88175 0.93988 1.01740 1.20436 0.93603 1.03327 1.02683 1.25787 0.96627 0.97076 0.97276 1.21188 0.93889 0.98056 0.99946 1.20217 0.93628 0.96508 1.01412 1.24896 1.05213 1.01659 0.86431 1.86497 1.37416 1.96989 1.14592 0.85388 0.78035 0.76512 0.80549 1.18191 1.18431 1.19439 1.21134 1.00435 0.90850 0.96856 1.23218 0.97264 0.95074 0.93212 1.67522 1.08957 1.11010 1.29635 1.23314 0.88634 0.94030 0.98280 0.72357 0.81627 0.82572 0.74645 0.90422 0.92238 0.91802 0.91843 0.90201 0.90398 0.93234 0.92136 0.88232 0.84673 0.72782 0.85804 0.85145 0.76298 0.84681 0.91283 0.87672 0.79443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.49 19.25 74.32 1.43 1.92 16 2 C -0.21 -0.01 13.28 30.02 0.40 0.39 16 3 C -0.01 -0.01 5.75 -21.20 -0.12 -0.14 16 4 C -0.06 -0.01 9.89 22.69 0.22 0.21 16 5 C -0.11 -0.30 9.61 22.57 0.22 -0.08 16 6 C 0.06 0.29 6.75 41.87 0.28 0.57 16 7 C 0.57 3.64 6.99 86.83 0.61 4.24 16 8 O -0.55 -6.32 13.19 -3.85 -0.05 -6.37 16 9 N -0.69 -1.20 5.14 -421.63 -2.17 -3.36 16 10 C 0.16 0.17 0.94 4.49 0.00 0.18 16 11 C -0.15 -0.39 8.15 71.98 0.59 0.20 16 12 C -0.12 -0.40 5.85 31.80 0.19 -0.22 16 13 C 0.04 0.04 4.96 86.65 0.43 0.47 16 14 N -0.51 0.38 5.39 -887.54 -4.78 -4.40 16 15 C 0.09 -0.22 5.18 85.56 0.44 0.22 16 16 C -0.08 -0.03 4.60 -19.90 -0.09 -0.12 16 17 C -0.07 -0.20 9.40 22.52 0.21 0.02 16 18 C 0.00 0.01 5.72 -21.41 -0.12 -0.12 16 19 C -0.20 -1.16 13.24 30.02 0.40 -0.76 16 20 C -0.15 -0.23 19.25 74.32 1.43 1.20 16 21 C -0.11 -0.40 8.37 22.52 0.19 -0.22 16 22 C -0.12 -0.13 5.35 -19.90 -0.11 -0.24 16 23 C -0.07 0.06 2.80 71.24 0.20 0.26 16 24 O -0.55 -0.16 12.83 -148.98 -1.91 -2.07 16 25 Si 0.97 0.30 25.13 68.60 1.72 2.02 16 26 H -0.26 -0.32 7.04 99.48 0.70 0.38 16 27 H -0.26 -0.52 7.11 99.48 0.71 0.19 16 28 H -0.27 -0.84 7.11 99.48 0.71 -0.13 16 29 C -0.07 -0.02 7.94 22.32 0.18 0.16 16 30 C 0.04 -0.10 6.16 86.45 0.53 0.43 16 31 N -0.46 -1.29 9.51 -183.93 -1.75 -3.04 16 32 C 0.12 0.05 10.92 85.20 0.93 0.98 16 33 H 0.26 -3.21 7.80 -4.42 -0.03 -3.25 16 34 H 0.17 -0.71 8.06 -2.91 -0.02 -0.74 16 35 H 0.16 0.29 7.63 -2.91 -0.02 0.27 16 36 H 0.42 -0.43 7.41 -92.71 -0.69 -1.11 16 37 H 0.08 0.09 8.11 -2.39 -0.02 0.07 16 38 H 0.06 0.47 6.04 -2.39 -0.01 0.45 16 39 H 0.06 0.06 8.14 -2.39 -0.02 0.05 16 40 H 0.06 0.45 6.81 -2.39 -0.02 0.44 16 41 H 0.08 0.36 7.84 -2.39 -0.02 0.34 16 42 H 0.08 0.22 7.72 -2.39 -0.02 0.20 16 43 H 0.05 0.04 7.06 -2.39 -0.02 0.02 16 44 H 0.06 -0.26 7.76 -2.39 -0.02 -0.28 16 45 H 0.10 -0.42 8.08 -2.39 -0.02 -0.44 16 46 H 0.14 0.15 8.06 -2.91 -0.02 0.13 16 47 H 0.26 -1.75 7.80 -4.43 -0.03 -1.79 16 48 H 0.12 0.32 4.86 -2.91 -0.01 0.31 16 49 H 0.13 -0.43 7.96 -2.39 -0.02 -0.45 16 50 H 0.39 -2.01 8.70 -74.06 -0.64 -2.65 16 51 H 0.14 -0.18 7.35 -2.91 -0.02 -0.20 16 52 H 0.07 -0.36 6.89 -2.39 -0.02 -0.37 16 53 H 0.11 -0.39 7.68 -2.39 -0.02 -0.41 16 54 H 0.19 -0.87 8.06 -2.91 -0.02 -0.90 16 Total: 0.00 -17.38 448.60 -0.13 -17.51 By element: Atomic # 1 Polarization: -10.23 SS G_CDS: 0.37 Total: -9.86 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: 8.44 Total: 9.57 kcal Atomic # 7 Polarization: -2.11 SS G_CDS: -8.70 Total: -10.81 kcal Atomic # 8 Polarization: -6.48 SS G_CDS: -1.96 Total: -8.44 kcal Atomic # 14 Polarization: 0.30 SS G_CDS: 1.72 Total: 2.02 kcal Total: -17.38 -0.13 -17.51 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_275030_14114082_14124148_16591380.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.630 kcal (2) G-P(sol) polarization free energy of solvation -17.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds