Wall clock time and date at job start Sat Mar 6 2021 15:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39522 * 120.13847 * 242.74900 * 3 2 1 5 5 C 1.37993 * 119.85406 * 179.97438 * 4 3 2 6 6 C 1.50697 * 119.92792 * 180.02562 * 5 4 3 7 7 O 1.42910 * 109.47054 * 245.00426 * 6 5 4 8 8 Si 1.86296 * 109.47281 * 5.00358 * 6 5 4 9 9 H 1.48503 * 109.47098 * 59.99998 * 8 6 5 10 10 H 1.48500 * 109.47314 * 180.02562 * 8 6 5 11 11 H 1.48508 * 109.47218 * 300.00193 * 8 6 5 12 12 C 1.38330 * 120.14196 * 359.73498 * 5 4 3 13 13 C 1.38365 * 120.28280 * 0.54193 * 12 5 4 14 14 C 1.50704 * 119.92237 * 179.72658 * 13 12 5 15 15 N 1.46907 * 109.46986 * 269.72420 * 14 13 12 16 16 C 1.46900 * 110.99931 * 293.95869 * 15 14 13 17 17 C 1.53243 * 109.33445 * 172.74879 * 16 15 14 18 18 N 1.47075 * 108.52095 * 53.83007 * 17 16 15 19 19 C 1.34780 * 120.88112 * 128.84254 * 18 17 16 20 20 O 1.21607 * 120.00143 * 184.80433 * 19 18 17 21 21 C 1.43196 * 120.00009 * 4.79647 * 19 18 17 22 22 C 8.63002 * 105.40761 * 108.13346 * 2 1 3 23 23 C 9.08488 * 96.89808 * 111.33168 * 2 1 3 24 24 C 1.52996 * 109.47624 * 94.58295 * 23 22 21 25 25 C 1.53005 * 109.46865 * 214.58505 * 23 22 21 26 26 C 1.47079 * 118.24059 * 308.80905 * 18 17 16 27 27 H 1.09005 * 109.62811 * 291.48536 * 26 18 17 28 28 C 1.52996 * 109.63279 * 171.09360 * 26 18 17 29 29 C 1.46903 * 110.99665 * 169.65713 * 15 14 13 30 30 C 1.37945 * 120.14316 * 359.45271 * 13 12 5 31 31 H 4.52057 * 14.01895 * 359.97438 * 4 2 1 32 32 H 1.08000 * 120.07385 * 0.02562 * 4 3 2 33 33 H 1.08994 * 109.46949 * 125.00870 * 6 5 4 34 34 H 0.96695 * 113.99821 * 60.00050 * 7 6 5 35 35 H 1.07993 * 119.85692 * 180.26727 * 12 5 4 36 36 H 1.09007 * 109.46489 * 149.73086 * 14 13 12 37 37 H 1.08990 * 109.47411 * 29.73149 * 14 13 12 38 38 H 1.08994 * 109.49593 * 52.79090 * 16 15 14 39 39 H 1.08996 * 109.49386 * 292.70144 * 16 15 14 40 40 H 1.09000 * 109.62826 * 294.11458 * 17 16 15 41 41 H 1.09001 * 109.62331 * 173.53784 * 17 16 15 42 42 H 1.09004 * 109.47459 * 334.57723 * 23 22 21 43 43 H 1.08994 * 109.46910 * 59.99732 * 24 23 22 44 44 H 1.08996 * 109.47402 * 180.02562 * 24 23 22 45 45 H 1.09003 * 109.46881 * 299.99968 * 24 23 22 46 46 H 1.09002 * 109.46863 * 299.99525 * 25 23 22 47 47 H 1.08997 * 109.47215 * 59.99718 * 25 23 22 48 48 H 1.09006 * 109.47002 * 180.02562 * 25 23 22 49 49 H 1.08997 * 109.47175 * 66.30897 * 28 26 18 50 50 H 1.08996 * 109.47255 * 186.31185 * 28 26 18 51 51 H 1.09004 * 109.46785 * 306.31441 * 28 26 18 52 52 H 1.09001 * 109.49348 * 67.29296 * 29 15 14 53 53 H 1.09003 * 109.49029 * 307.21445 * 29 15 14 54 54 H 1.08005 * 120.07063 * 180.29221 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3063 0.5534 1.0727 5 6 4.6862 0.5505 1.0668 6 6 5.4442 1.1466 2.2248 7 8 6.1759 2.2897 1.7773 8 14 4.2444 1.6589 3.5547 9 1 3.4841 0.4710 4.0198 10 1 4.9914 2.2469 4.6956 11 1 3.3012 2.6676 3.0087 12 6 5.3751 -0.0040 0.0031 13 6 4.6865 -0.5486 -1.0663 14 6 5.4453 -1.1450 -2.2238 15 7 5.6916 -0.1075 -3.2343 16 6 4.4327 0.3479 -3.8390 17 6 4.7123 1.5483 -4.7497 18 7 5.7627 1.1729 -5.7082 19 6 5.5935 1.3674 -7.0311 20 8 6.4339 0.9720 -7.8162 21 6 4.4242 2.0395 -7.5123 22 6 3.4668 2.5894 -7.9066 23 6 2.2651 3.2809 -8.4012 24 6 2.2099 3.1796 -9.9268 25 6 1.0180 2.6282 -7.8013 26 6 7.0029 0.5802 -5.1849 27 1 7.5604 1.3318 -4.6259 28 6 7.8562 0.0652 -6.3457 29 6 6.6332 -0.5821 -4.2572 30 6 3.3071 -0.5520 -1.0726 31 1 -1.0500 0.0002 -0.0007 32 1 2.7695 0.9820 1.9061 33 1 6.1365 0.4062 2.6256 34 1 5.6223 2.9909 1.4075 35 1 6.4550 -0.0077 0.0053 36 1 4.8592 -1.9508 -2.6658 37 1 6.3971 -1.5402 -1.8693 38 1 3.7371 0.6418 -3.0531 39 1 3.9980 -0.4608 -4.4265 40 1 5.0496 2.3929 -4.1489 41 1 3.8042 1.8182 -5.2887 42 1 2.3028 4.3300 -8.1078 43 1 2.1721 2.1306 -10.2202 44 1 1.3203 3.6920 -10.2930 45 1 3.0983 3.6446 -10.3542 46 1 0.9802 1.5791 -8.0947 47 1 1.0573 2.7003 -6.7144 48 1 0.1281 3.1399 -8.1679 49 1 8.1964 0.9074 -6.9482 50 1 8.7190 -0.4720 -5.9520 51 1 7.2609 -0.6068 -6.9640 52 1 6.1678 -1.3779 -4.8388 53 1 7.5333 -0.9626 -3.7744 54 1 2.7707 -0.9817 -1.9058 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_275030_16591384_12659054_16591380.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 15:53:03 Heat of formation + Delta-G solvation = 82.100588 kcal Electronic energy + Delta-G solvation = -33216.156066 eV Core-core repulsion = 29008.924715 eV Total energy + Delta-G solvation = -4207.231351 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 368.201 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -41.78418 -40.92320 -39.18052 -37.71513 -37.42706 -36.20796 -34.73747 -34.39700 -32.93944 -32.60876 -31.46669 -29.74152 -28.12232 -27.80193 -26.82868 -25.88225 -25.13658 -24.45017 -23.40479 -22.73329 -21.59537 -21.16176 -19.58040 -18.83342 -18.04915 -17.63971 -17.38378 -17.10574 -16.87967 -16.75373 -16.42376 -16.35098 -16.04342 -15.92254 -15.75648 -15.51045 -15.42633 -15.29704 -14.70957 -14.55232 -14.46588 -14.11714 -13.93226 -13.67908 -13.58870 -13.24799 -13.17483 -12.99153 -12.92468 -12.76895 -12.63287 -12.52792 -12.48045 -12.39412 -12.25742 -12.23561 -12.18286 -12.09671 -11.99739 -11.69990 -11.46323 -11.40472 -11.28174 -10.59117 -10.42061 -9.96459 -9.89309 -9.51402 -9.36710 -0.09888 0.14645 0.40672 1.14180 1.15820 1.41159 1.49186 1.71803 1.76790 1.88542 1.92176 2.36209 2.66687 2.88055 3.02002 3.25482 3.48309 3.61967 3.65540 3.71790 3.78450 3.87095 3.96975 4.00298 4.08432 4.10201 4.12565 4.14717 4.21500 4.25600 4.28809 4.31304 4.41927 4.50021 4.56997 4.63068 4.65017 4.67847 4.72280 4.73404 4.76599 4.84471 4.87154 4.89412 4.93378 5.06211 5.08003 5.12725 5.19737 5.26490 5.28869 5.30794 5.33165 5.47211 5.50247 5.79997 5.87307 5.90564 6.11032 6.15118 6.52389 6.70593 6.86969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.200 4.200 3 C 0.003 3.997 4 C -0.113 4.113 5 C -0.117 4.117 6 C -0.069 4.069 7 O -0.547 6.547 8 Si 0.969 3.031 9 H -0.262 1.262 10 H -0.271 1.271 11 H -0.257 1.257 12 C -0.058 4.058 13 C -0.074 4.074 14 C 0.097 3.903 15 N -0.533 5.533 16 C 0.042 3.958 17 C 0.114 3.886 18 N -0.598 5.598 19 C 0.628 3.372 20 O -0.554 6.554 21 C -0.271 4.271 22 C -0.048 4.048 23 C 0.003 3.997 24 C -0.148 4.148 25 C -0.144 4.144 26 C 0.150 3.850 27 H 0.092 0.908 28 C -0.132 4.132 29 C 0.051 3.949 30 C -0.088 4.088 31 H 0.255 0.745 32 H 0.124 0.876 33 H 0.132 0.868 34 H 0.388 0.612 35 H 0.142 0.858 36 H 0.050 0.950 37 H 0.105 0.895 38 H 0.100 0.900 39 H 0.035 0.965 40 H 0.087 0.913 41 H 0.092 0.908 42 H 0.123 0.877 43 H 0.052 0.948 44 H 0.091 0.909 45 H 0.054 0.946 46 H 0.053 0.947 47 H 0.065 0.935 48 H 0.089 0.911 49 H 0.054 0.946 50 H 0.072 0.928 51 H 0.049 0.951 52 H 0.035 0.965 53 H 0.112 0.888 54 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.123 0.713 2.692 5.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.200 4.200 3 C 0.002 3.998 4 C -0.131 4.131 5 C -0.117 4.117 6 C -0.181 4.181 7 O -0.354 6.354 8 Si 0.795 3.205 9 H -0.187 1.187 10 H -0.196 1.196 11 H -0.181 1.181 12 C -0.077 4.077 13 C -0.075 4.075 14 C -0.030 4.030 15 N -0.257 5.257 16 C -0.087 4.087 17 C -0.008 4.008 18 N -0.330 5.330 19 C 0.418 3.582 20 O -0.435 6.435 21 C -0.274 4.274 22 C -0.051 4.051 23 C -0.015 4.015 24 C -0.205 4.205 25 C -0.201 4.201 26 C 0.047 3.953 27 H 0.110 0.890 28 C -0.189 4.189 29 C -0.077 4.077 30 C -0.107 4.107 31 H 0.271 0.729 32 H 0.141 0.859 33 H 0.149 0.851 34 H 0.237 0.763 35 H 0.160 0.840 36 H 0.068 0.932 37 H 0.123 0.877 38 H 0.118 0.882 39 H 0.053 0.947 40 H 0.105 0.895 41 H 0.110 0.890 42 H 0.141 0.859 43 H 0.071 0.929 44 H 0.110 0.890 45 H 0.073 0.927 46 H 0.072 0.928 47 H 0.084 0.916 48 H 0.108 0.892 49 H 0.073 0.927 50 H 0.091 0.909 51 H 0.068 0.932 52 H 0.053 0.947 53 H 0.130 0.870 54 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -4.514 0.773 3.394 5.701 hybrid contribution -0.786 -0.552 -0.990 1.380 sum -5.301 0.220 2.404 5.825 Atomic orbital electron populations 1.25800 0.96657 0.97281 0.97146 1.20442 0.92785 1.03326 1.03418 1.15923 0.86855 1.01214 0.95759 1.21195 0.94024 0.99903 0.97945 1.20261 0.92725 1.00740 0.97998 1.24868 1.02692 0.91020 0.99478 1.86505 1.37326 1.28177 1.83424 0.85403 0.77134 0.80433 0.77539 1.18664 1.19647 1.18116 1.21112 1.00932 0.94147 0.91498 1.19692 0.92607 0.99213 0.95954 1.21070 1.00756 0.91552 0.89591 1.61932 1.12000 1.37961 1.13843 1.22540 0.92159 0.96539 0.97441 1.21958 0.90610 0.97931 0.90281 1.48149 1.19044 1.61110 1.04700 1.15037 0.82708 0.78020 0.82433 1.90902 1.43850 1.51569 1.57139 1.20790 0.97195 1.04847 1.04522 1.23370 0.93528 0.92269 0.95913 1.18837 0.86647 0.99597 0.96373 1.21878 1.03523 1.02652 0.92492 1.21851 0.95817 1.00977 1.01439 1.21527 0.83676 0.95435 0.94617 0.89024 1.22046 0.98989 1.01690 0.96211 1.22570 0.97782 0.95018 0.92345 1.21216 0.93791 0.98417 0.97253 0.72867 0.85885 0.85074 0.76270 0.84014 0.93157 0.87705 0.88236 0.94660 0.89460 0.88976 0.85912 0.92861 0.89026 0.92678 0.92790 0.91588 0.89224 0.92693 0.90950 0.93211 0.94717 0.87000 0.85121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.11 19.25 74.32 1.43 1.54 16 2 C -0.20 -0.66 13.24 30.02 0.40 -0.26 16 3 C 0.00 0.01 5.72 -21.41 -0.12 -0.12 16 4 C -0.11 -0.16 8.37 22.52 0.19 0.02 16 5 C -0.12 0.10 5.34 -19.90 -0.11 -0.01 16 6 C -0.07 0.17 2.80 71.24 0.20 0.37 16 7 O -0.55 0.66 12.84 -148.98 -1.91 -1.26 16 8 Si 0.97 -0.98 25.13 68.60 1.72 0.74 16 9 H -0.26 -0.23 7.11 99.48 0.71 0.47 16 10 H -0.27 -0.58 7.11 99.48 0.71 0.13 16 11 H -0.26 0.09 7.04 99.48 0.70 0.79 16 12 C -0.06 0.10 9.33 22.32 0.21 0.31 16 13 C -0.07 0.15 4.90 -19.90 -0.10 0.05 16 14 C 0.10 -0.40 5.12 85.56 0.44 0.04 16 15 N -0.53 1.23 4.62 -899.79 -4.16 -2.92 16 16 C 0.04 -0.08 5.34 86.38 0.46 0.38 16 17 C 0.11 -0.04 6.46 86.35 0.56 0.52 16 18 N -0.60 -2.71 3.01 -802.99 -2.42 -5.13 16 19 C 0.63 6.65 7.45 85.49 0.64 7.28 16 20 O -0.55 -9.29 12.58 -4.05 -0.05 -9.34 16 21 C -0.27 -2.22 11.61 30.03 0.35 -1.87 16 22 C -0.05 -0.18 12.53 31.14 0.39 0.21 16 23 C 0.00 -0.01 3.30 -12.60 -0.04 -0.05 16 24 C -0.15 0.47 9.15 71.98 0.66 1.13 16 25 C -0.14 0.82 9.15 71.98 0.66 1.48 16 26 C 0.15 0.32 3.64 44.96 0.16 0.48 16 27 H 0.09 0.10 8.14 -2.38 -0.02 0.08 16 28 C -0.13 -0.70 7.62 71.98 0.55 -0.15 16 29 C 0.05 -0.09 4.92 86.38 0.42 0.34 16 30 C -0.09 0.02 7.57 22.52 0.17 0.19 16 31 H 0.26 -2.25 7.80 -4.42 -0.03 -2.28 16 32 H 0.12 0.09 4.86 -2.91 -0.01 0.08 16 33 H 0.13 -0.63 7.96 -2.39 -0.02 -0.65 16 34 H 0.39 -2.67 8.70 -74.06 -0.64 -3.32 16 35 H 0.14 -0.49 8.06 -2.91 -0.02 -0.51 16 36 H 0.05 -0.21 8.06 -2.38 -0.02 -0.23 16 37 H 0.10 -0.67 7.90 -2.39 -0.02 -0.69 16 38 H 0.10 -0.26 5.66 -2.39 -0.01 -0.28 16 39 H 0.04 -0.02 8.14 -2.39 -0.02 -0.04 16 40 H 0.09 -0.10 8.14 -2.39 -0.02 -0.12 16 41 H 0.09 -0.10 6.46 -2.39 -0.02 -0.11 16 42 H 0.12 -0.82 8.14 -2.39 -0.02 -0.84 16 43 H 0.05 -0.06 8.14 -2.39 -0.02 -0.08 16 44 H 0.09 -0.63 8.14 -2.39 -0.02 -0.65 16 45 H 0.05 -0.07 8.14 -2.39 -0.02 -0.09 16 46 H 0.05 -0.20 8.14 -2.39 -0.02 -0.22 16 47 H 0.07 -0.41 8.14 -2.39 -0.02 -0.42 16 48 H 0.09 -0.78 8.14 -2.38 -0.02 -0.79 16 49 H 0.05 0.55 6.77 -2.39 -0.02 0.54 16 50 H 0.07 0.04 8.14 -2.39 -0.02 0.02 16 51 H 0.05 0.49 6.78 -2.38 -0.02 0.47 16 52 H 0.03 0.01 8.14 -2.39 -0.02 -0.01 16 53 H 0.11 -0.59 7.99 -2.39 -0.02 -0.61 16 54 H 0.13 -0.26 7.92 -2.91 -0.02 -0.28 16 Total: 0.00 -17.35 434.87 1.71 -15.65 By element: Atomic # 1 Polarization: -10.64 SS G_CDS: 1.00 Total: -9.64 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: 7.52 Total: 11.90 kcal Atomic # 7 Polarization: -1.48 SS G_CDS: -6.57 Total: -8.05 kcal Atomic # 8 Polarization: -8.63 SS G_CDS: -1.96 Total: -10.59 kcal Atomic # 14 Polarization: -0.98 SS G_CDS: 1.72 Total: 0.74 kcal Total: -17.35 1.71 -15.65 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_275030_16591384_12659054_16591380.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.747 kcal (2) G-P(sol) polarization free energy of solvation -17.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds