Wall clock time and date at job start Sat Mar 6 2021 15:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39515 * 120.14145 * 35.34865 * 3 2 1 5 5 C 1.37999 * 119.85744 * 180.02562 * 4 3 2 6 6 C 1.50702 * 119.93241 * 179.97438 * 5 4 3 7 7 O 1.42898 * 109.47159 * 120.02193 * 6 5 4 8 8 Si 1.86299 * 109.46946 * 0.02562 * 6 5 4 9 9 H 1.48503 * 109.47324 * 59.99999 * 8 6 5 10 10 H 1.48497 * 109.47242 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47070 * 300.00065 * 8 6 5 12 12 C 1.38324 * 120.13853 * 359.97438 * 5 4 3 13 13 C 1.38360 * 120.28914 * 0.02618 * 12 5 4 14 14 C 1.50702 * 119.93233 * 179.97438 * 13 12 5 15 15 N 1.46905 * 109.46937 * 89.99775 * 14 13 12 16 16 H 1.00895 * 109.32484 * 305.22885 * 15 14 13 17 17 C 1.46838 * 109.39462 * 65.00428 * 15 14 13 18 18 C 1.53222 * 109.42715 * 184.59244 * 17 15 14 19 19 N 1.47114 * 108.47940 * 305.40174 * 18 17 15 20 20 C 1.34773 * 120.94338 * 230.39344 * 19 18 17 21 21 O 1.21617 * 120.00262 * 180.02562 * 20 19 18 22 22 C 1.43207 * 120.00112 * 0.02562 * 20 19 18 23 23 C 8.46509 * 103.73621 * 171.73100 * 2 1 3 24 24 C 8.87615 * 94.86493 * 168.72451 * 2 1 3 25 25 C 1.52997 * 109.47240 * 300.44680 * 24 23 22 26 26 C 1.53006 * 109.46868 * 60.44602 * 24 23 22 27 27 C 1.47109 * 118.11447 * 50.67257 * 19 18 17 28 28 H 1.08999 * 109.63433 * 189.63653 * 27 19 18 29 29 C 1.53002 * 109.63671 * 69.02693 * 27 19 18 30 30 C 1.46832 * 109.39446 * 185.45398 * 15 14 13 31 31 C 1.37954 * 120.14214 * 0.25056 * 13 12 5 32 32 H 4.52055 * 14.02093 * 359.97438 * 4 2 1 33 33 H 1.07999 * 120.07428 * 0.04372 * 4 3 2 34 34 H 1.08999 * 109.46725 * 240.02286 * 6 5 4 35 35 H 0.96698 * 114.00319 * 300.00456 * 7 6 5 36 36 H 1.08000 * 119.85777 * 179.97438 * 12 5 4 37 37 H 1.08996 * 109.47095 * 330.00123 * 14 13 12 38 38 H 1.09004 * 109.47443 * 209.99760 * 14 13 12 39 39 H 1.08997 * 109.47722 * 64.60044 * 17 15 14 40 40 H 1.08999 * 109.47848 * 304.57674 * 17 15 14 41 41 H 1.08999 * 109.63423 * 185.70923 * 18 17 15 42 42 H 1.08997 * 109.81099 * 65.20096 * 18 17 15 43 43 H 1.08996 * 109.46761 * 180.43934 * 24 23 22 44 44 H 1.09002 * 109.47153 * 299.99895 * 25 24 23 45 45 H 1.09001 * 109.46832 * 180.02562 * 25 24 23 46 46 H 1.09004 * 109.47261 * 60.00067 * 25 24 23 47 47 H 1.08993 * 109.46955 * 300.00020 * 26 24 23 48 48 H 1.09000 * 109.47050 * 59.99849 * 26 24 23 49 49 H 1.09001 * 109.47002 * 179.97438 * 26 24 23 50 50 H 1.09000 * 109.46864 * 60.00170 * 29 27 19 51 51 H 1.08993 * 109.47375 * 179.97438 * 29 27 19 52 52 H 1.09001 * 109.47121 * 300.00276 * 29 27 19 53 53 H 1.09001 * 109.47630 * 295.39611 * 30 15 14 54 54 H 1.08993 * 109.48030 * 55.41270 * 30 15 14 55 55 H 1.08000 * 120.07324 * 179.71679 * 31 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3070 -0.9831 -0.6980 5 6 4.6870 -0.9772 -0.6936 6 6 5.4459 -2.0394 -1.4466 7 8 6.2683 -1.4236 -2.4398 8 14 4.2411 -3.1981 -2.2692 9 1 3.3876 -2.4351 -3.2151 10 1 4.9888 -4.2444 -3.0117 11 1 3.3864 -3.8380 -1.2371 12 6 5.3751 0.0016 0.0004 13 6 4.6859 0.9800 0.6947 14 6 5.4437 2.0423 1.4486 15 7 5.6902 3.1889 0.5640 16 1 6.1580 2.8715 -0.2716 17 6 4.4094 3.8084 0.2005 18 6 4.6559 4.9319 -0.8118 19 7 5.6415 5.8642 -0.2429 20 6 5.4064 7.1910 -0.2179 21 8 6.2334 7.9463 0.2561 22 6 4.1828 7.7116 -0.7496 23 6 3.1841 8.1375 -1.1826 24 6 1.9268 8.6735 -1.7293 25 6 1.3530 9.7127 -0.7640 26 6 2.1989 9.3310 -3.0838 27 6 6.8938 5.3077 0.2922 28 1 7.4406 6.0843 0.8270 29 6 7.7491 4.7687 -0.8562 30 6 6.5393 4.1658 1.2572 31 6 3.3064 0.9820 0.7029 32 1 -1.0500 -0.0010 -0.0001 33 1 2.7709 -1.7475 -1.2409 34 1 6.0723 -2.5994 -0.7523 35 1 5.7764 -0.9073 -3.0928 36 1 6.4551 0.0016 0.0012 37 1 6.3956 1.6360 1.7905 38 1 4.8571 2.3661 2.3084 39 1 3.9385 4.2202 1.0931 40 1 3.7551 3.0574 -0.2422 41 1 3.7227 5.4600 -1.0073 42 1 5.0416 4.5135 -1.7414 43 1 1.2109 7.8616 -1.8568 44 1 1.1592 9.2443 0.2009 45 1 0.4218 10.1092 -1.1687 46 1 2.0691 10.5246 -0.6365 47 1 2.9149 10.1427 -2.9563 48 1 2.6077 8.5906 -3.7714 49 1 1.2679 9.7274 -3.4888 50 1 7.9797 5.5784 -1.5485 51 1 8.6761 4.3575 -0.4568 52 1 7.2009 3.9866 -1.3815 53 1 6.0039 4.5668 2.1178 54 1 7.4543 3.6783 1.5934 55 1 2.7695 1.7436 1.2490 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_275030_16591384_12659054_16591380.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 15:53:37 Heat of formation + Delta-G solvation = 167.167436 kcal Electronic energy + Delta-G solvation = -33780.295887 eV Core-core repulsion = 29563.097572 eV Total energy + Delta-G solvation = -4217.198315 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 369.209 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -43.38952 -41.16679 -40.38778 -37.87806 -37.47668 -37.10023 -34.97108 -34.48386 -33.35337 -32.88572 -31.64474 -30.45363 -28.34099 -28.17569 -27.06970 -26.69529 -25.68384 -25.24896 -24.21590 -23.13785 -22.38434 -21.21008 -19.92842 -19.83897 -18.43878 -18.29042 -18.08757 -17.55317 -17.51394 -17.30443 -16.95665 -16.68684 -16.63387 -16.30047 -16.02738 -15.74637 -15.52793 -15.51837 -15.12468 -14.89491 -14.77578 -14.48209 -14.32494 -14.14855 -13.90159 -13.54432 -13.52176 -13.25458 -13.22804 -13.03787 -12.97315 -12.93190 -12.85528 -12.68337 -12.59922 -12.42755 -12.41504 -12.29694 -12.22954 -12.18508 -11.86306 -11.73863 -11.54690 -11.49972 -11.25333 -10.55914 -10.23294 -10.13005 -9.65351 -0.32488 -0.13427 0.30219 0.76336 1.08436 1.11807 1.29334 1.37767 1.52151 1.64442 1.82596 1.86531 2.24969 2.48541 2.62182 2.73108 2.81240 2.96300 3.08555 3.17791 3.34393 3.44458 3.51404 3.57839 3.67370 3.85667 3.89018 3.90824 3.95323 4.04115 4.04230 4.06539 4.08001 4.15825 4.19614 4.32509 4.35074 4.38261 4.39443 4.47521 4.56389 4.59325 4.62233 4.66143 4.67053 4.74442 4.79532 4.83482 4.83928 5.00650 5.03265 5.13463 5.14676 5.20888 5.23952 5.24449 5.26116 5.26801 5.67547 5.74971 6.06102 6.46793 6.66737 6.68623 Molecular weight = 369.21amu Principal moments of inertia in cm(-1) A = 0.009129 B = 0.002578 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3066.440858 B =10856.773683 C =12305.025617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.201 4.201 3 C 0.003 3.997 4 C -0.102 4.102 5 C -0.118 4.118 6 C -0.048 4.048 7 O -0.540 6.540 8 Si 0.935 3.065 9 H -0.260 1.260 10 H -0.287 1.287 11 H -0.274 1.274 12 C -0.043 4.043 13 C -0.127 4.127 14 C 0.053 3.947 15 N -0.373 5.373 16 H 0.434 0.566 17 C -0.018 4.018 18 C 0.077 3.923 19 N -0.603 5.603 20 C 0.644 3.356 21 O -0.559 6.559 22 C -0.270 4.270 23 C -0.039 4.039 24 C 0.003 3.997 25 C -0.152 4.152 26 C -0.151 4.151 27 C 0.113 3.887 28 H 0.114 0.886 29 C -0.180 4.180 30 C 0.002 3.998 31 C -0.062 4.062 32 H 0.241 0.759 33 H 0.105 0.895 34 H 0.140 0.860 35 H 0.391 0.609 36 H 0.175 0.825 37 H 0.180 0.820 38 H 0.162 0.838 39 H 0.151 0.849 40 H 0.155 0.845 41 H 0.113 0.887 42 H 0.115 0.885 43 H 0.131 0.869 44 H 0.065 0.935 45 H 0.082 0.918 46 H 0.047 0.953 47 H 0.047 0.953 48 H 0.066 0.934 49 H 0.082 0.918 50 H 0.043 0.957 51 H 0.107 0.893 52 H 0.088 0.912 53 H 0.148 0.852 54 H 0.187 0.813 55 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.628 -2.005 5.540 6.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.201 4.201 3 C 0.003 3.997 4 C -0.120 4.120 5 C -0.118 4.118 6 C -0.162 4.162 7 O -0.347 6.347 8 Si 0.765 3.235 9 H -0.184 1.184 10 H -0.213 1.213 11 H -0.199 1.199 12 C -0.061 4.061 13 C -0.128 4.128 14 C -0.066 4.066 15 N 0.047 4.953 16 H 0.273 0.727 17 C -0.141 4.141 18 C -0.045 4.045 19 N -0.336 5.336 20 C 0.434 3.566 21 O -0.438 6.438 22 C -0.272 4.272 23 C -0.041 4.041 24 C -0.015 4.015 25 C -0.209 4.209 26 C -0.208 4.208 27 C 0.011 3.989 28 H 0.131 0.869 29 C -0.237 4.237 30 C -0.120 4.120 31 C -0.080 4.080 32 H 0.258 0.742 33 H 0.123 0.877 34 H 0.158 0.842 35 H 0.241 0.759 36 H 0.192 0.808 37 H 0.198 0.802 38 H 0.180 0.820 39 H 0.169 0.831 40 H 0.172 0.828 41 H 0.131 0.869 42 H 0.133 0.867 43 H 0.149 0.851 44 H 0.084 0.916 45 H 0.101 0.899 46 H 0.066 0.934 47 H 0.066 0.934 48 H 0.085 0.915 49 H 0.101 0.899 50 H 0.062 0.938 51 H 0.126 0.874 52 H 0.106 0.894 53 H 0.166 0.834 54 H 0.205 0.795 55 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 2.849 -2.376 5.950 7.012 hybrid contribution -1.038 0.236 -1.084 1.519 sum 1.811 -2.140 4.866 5.616 Atomic orbital electron populations 1.25821 0.97045 0.97246 0.97408 1.20522 0.93117 1.03288 1.03137 1.15952 0.86097 0.97361 1.00292 1.21376 0.94835 0.97605 0.98210 1.20150 0.92045 0.98954 1.00676 1.24383 1.00231 0.98109 0.93442 1.86548 1.35974 1.70441 1.41744 0.85883 0.77961 0.79676 0.79992 1.18379 1.21256 1.19903 1.21419 1.02253 0.90919 0.91504 1.19527 0.92395 0.99024 1.01811 1.22851 1.08197 0.82582 0.93009 1.45466 1.15501 1.15156 1.19214 0.72651 1.24328 0.85851 0.98708 1.05174 1.22483 0.94949 0.89991 0.97106 1.48156 1.20014 1.04388 1.61091 1.14809 0.82143 0.82661 0.77026 1.90931 1.47320 1.58771 1.46791 1.20427 0.95967 1.05163 1.05687 1.23080 0.94047 0.95088 0.91921 1.18772 0.88472 0.99152 0.95071 1.21893 1.01709 0.98070 0.99212 1.21884 1.03272 1.00843 0.94787 1.21970 0.84488 0.96588 0.95826 0.86856 1.22357 1.01437 1.02163 0.97781 1.24414 1.00926 0.89713 0.96907 1.21536 0.93958 0.96980 0.95571 0.74218 0.87740 0.84223 0.75937 0.80767 0.80227 0.81988 0.83096 0.82778 0.86857 0.86669 0.85127 0.91612 0.89923 0.93414 0.93408 0.91467 0.89920 0.93784 0.87438 0.89374 0.83361 0.79529 0.81928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 3.92 19.25 74.32 1.43 5.35 16 2 C -0.20 5.08 13.24 30.01 0.40 5.48 16 3 C 0.00 -0.10 5.72 -21.41 -0.12 -0.22 16 4 C -0.10 3.06 8.37 22.52 0.19 3.25 16 5 C -0.12 4.25 5.39 -19.90 -0.11 4.14 16 6 C -0.05 1.51 2.82 71.24 0.20 1.71 16 7 O -0.54 17.23 12.77 -148.98 -1.90 15.33 16 8 Si 0.93 -20.84 25.07 68.60 1.72 -19.12 16 9 H -0.26 5.48 7.11 99.48 0.71 6.18 16 10 H -0.29 4.40 7.11 99.48 0.71 5.10 16 11 H -0.27 5.01 7.11 99.48 0.71 5.72 16 12 C -0.04 1.99 9.25 22.32 0.21 2.20 16 13 C -0.13 6.62 4.71 -19.90 -0.09 6.52 16 14 C 0.05 -3.36 4.81 85.56 0.41 -2.95 16 15 N -0.37 23.84 0.38 -899.36 -0.34 23.49 16 16 H 0.43 -28.91 6.37 -89.70 -0.57 -29.48 16 17 C -0.02 1.04 4.88 86.39 0.42 1.46 16 18 C 0.08 -3.77 5.99 86.34 0.52 -3.25 16 19 N -0.60 24.45 2.71 -802.09 -2.17 22.27 16 20 C 0.64 -16.35 7.56 85.49 0.65 -15.70 16 21 O -0.56 7.98 16.55 -4.09 -0.07 7.92 16 22 C -0.27 6.31 11.59 30.07 0.35 6.66 16 23 C -0.04 0.93 12.50 31.18 0.39 1.32 16 24 C 0.00 -0.08 3.30 -12.60 -0.04 -0.12 16 25 C -0.15 3.58 9.15 71.98 0.66 4.24 16 26 C -0.15 3.61 9.15 71.98 0.66 4.27 16 27 C 0.11 -5.29 3.24 45.09 0.15 -5.14 16 28 H 0.11 -4.40 7.07 -2.39 -0.02 -4.42 16 29 C -0.18 8.37 9.10 71.98 0.66 9.02 16 30 C 0.00 -0.13 4.79 86.53 0.41 0.28 16 31 C -0.06 2.76 7.48 22.52 0.17 2.93 16 32 H 0.24 -7.05 7.80 -4.42 -0.03 -7.08 16 33 H 0.10 -2.61 4.87 -2.91 -0.01 -2.62 16 34 H 0.14 -4.69 7.96 -2.39 -0.02 -4.71 16 35 H 0.39 -14.81 8.70 -74.06 -0.64 -15.45 16 36 H 0.17 -9.11 8.06 -2.91 -0.02 -9.13 16 37 H 0.18 -12.30 7.96 -2.39 -0.02 -12.32 16 38 H 0.16 -10.68 8.05 -2.39 -0.02 -10.70 16 39 H 0.15 -9.10 8.06 -2.39 -0.02 -9.12 16 40 H 0.15 -9.18 5.61 -2.39 -0.01 -9.20 16 41 H 0.11 -5.11 6.42 -2.39 -0.02 -5.12 16 42 H 0.12 -5.99 7.67 -2.39 -0.02 -6.01 16 43 H 0.13 -4.09 8.14 -2.39 -0.02 -4.11 16 44 H 0.06 -1.58 8.14 -2.39 -0.02 -1.60 16 45 H 0.08 -2.03 8.14 -2.39 -0.02 -2.05 16 46 H 0.05 -0.93 8.14 -2.38 -0.02 -0.95 16 47 H 0.05 -0.95 8.14 -2.39 -0.02 -0.97 16 48 H 0.07 -1.66 8.14 -2.39 -0.02 -1.68 16 49 H 0.08 -2.05 8.14 -2.39 -0.02 -2.07 16 50 H 0.04 -1.56 8.14 -2.39 -0.02 -1.58 16 51 H 0.11 -5.26 8.14 -2.39 -0.02 -5.28 16 52 H 0.09 -4.70 5.96 -2.39 -0.01 -4.71 16 53 H 0.15 -9.02 8.06 -2.39 -0.02 -9.04 16 54 H 0.19 -12.48 8.02 -2.39 -0.02 -12.49 16 55 H 0.16 -8.03 7.91 -2.91 -0.02 -8.05 16 Total: 1.00 -86.77 438.89 5.17 -81.59 By element: Atomic # 1 Polarization: -163.39 SS G_CDS: 0.44 Total: -162.94 kcal Atomic # 6 Polarization: 23.96 SS G_CDS: 7.50 Total: 31.45 kcal Atomic # 7 Polarization: 48.28 SS G_CDS: -2.52 Total: 45.77 kcal Atomic # 8 Polarization: 25.22 SS G_CDS: -1.97 Total: 23.25 kcal Atomic # 14 Polarization: -20.84 SS G_CDS: 1.72 Total: -19.12 kcal Total: -86.77 5.17 -81.59 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_275030_16591384_12659054_16591380.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 248.761 kcal (2) G-P(sol) polarization free energy of solvation -86.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 161.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 167.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds