Wall clock time and date at job start Sat Mar 6 2021 16:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39518 * 120.14500 * 29.28004 * 3 2 1 5 5 C 1.37996 * 119.85227 * 180.02562 * 4 3 2 6 6 C 1.50707 * 119.92198 * 180.02562 * 5 4 3 7 7 O 1.42902 * 109.46767 * 244.97952 * 6 5 4 8 8 Si 1.86298 * 109.47333 * 4.97767 * 6 5 4 9 9 H 1.48502 * 109.46917 * 179.97438 * 8 6 5 10 10 H 1.48501 * 109.47327 * 299.99894 * 8 6 5 11 11 H 1.48501 * 109.46958 * 60.00209 * 8 6 5 12 12 C 1.38323 * 120.14712 * 0.02562 * 5 4 3 13 13 C 1.38363 * 120.28514 * 359.97438 * 12 5 4 14 14 C 1.50696 * 119.93029 * 180.02562 * 13 12 5 15 15 N 1.46900 * 109.47253 * 89.99904 * 14 13 12 16 16 C 1.46904 * 110.99965 * 294.30218 * 15 14 13 17 17 C 1.53688 * 109.25780 * 172.60562 * 16 15 14 18 18 N 1.47087 * 108.27785 * 54.08350 * 17 16 15 19 19 C 1.34775 * 120.88110 * 128.75195 * 18 17 16 20 20 O 1.21614 * 119.99774 * 174.17024 * 19 18 17 21 21 C 1.43201 * 119.99935 * 354.17311 * 19 18 17 22 22 C 9.25505 * 138.83833 * 322.16464 * 3 1 2 23 23 C 9.82013 * 126.16846 * 307.66011 * 4 1 2 24 24 C 1.53001 * 117.49689 * 280.07371 * 23 22 21 25 25 C 1.53000 * 117.49960 * 348.73237 * 23 22 21 26 26 C 1.47075 * 118.23426 * 308.48769 * 18 17 16 27 27 H 1.08998 * 109.63084 * 291.54662 * 26 18 17 28 28 C 1.52996 * 109.62739 * 171.16526 * 26 18 17 29 29 C 1.46900 * 111.00078 * 170.00577 * 15 14 13 30 30 C 1.37960 * 120.14348 * 0.29508 * 13 12 5 31 31 H 4.52058 * 14.02071 * 0.02562 * 4 2 1 32 32 H 1.07990 * 120.06975 * 0.04967 * 4 3 2 33 33 H 1.08998 * 109.46950 * 124.98469 * 6 5 4 34 34 H 0.96704 * 113.99902 * 180.02562 * 7 6 5 35 35 H 1.07994 * 119.85427 * 179.97438 * 12 5 4 36 36 H 1.09003 * 109.46922 * 330.00335 * 14 13 12 37 37 H 1.08991 * 109.47539 * 210.00231 * 14 13 12 38 38 H 1.08997 * 109.49737 * 292.70847 * 16 15 14 39 39 H 1.09009 * 109.48980 * 52.78679 * 16 15 14 40 40 H 1.09003 * 109.80301 * 294.42276 * 17 16 15 41 41 H 1.08998 * 109.70462 * 173.69085 * 17 16 15 42 42 H 1.08996 * 115.55235 * 134.40754 * 23 22 21 43 43 H 1.08995 * 117.50211 * 214.99987 * 24 23 22 44 44 H 1.08996 * 117.50154 * 0.02920 * 24 23 22 45 45 H 1.09000 * 117.49954 * 359.97438 * 25 23 22 46 46 H 1.09001 * 117.49655 * 144.96973 * 25 23 22 47 47 H 1.09004 * 109.47825 * 68.31690 * 28 26 18 48 48 H 1.09003 * 109.47402 * 188.31838 * 28 26 18 49 49 H 1.09004 * 109.47202 * 308.31788 * 28 26 18 50 50 H 1.08996 * 109.49504 * 67.29143 * 29 15 14 51 51 H 1.09002 * 109.50970 * 307.22534 * 29 15 14 52 52 H 1.07998 * 120.07082 * 179.70769 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3071 -1.0514 -0.5901 5 6 4.6870 -1.0449 -0.5862 6 6 5.4460 -2.1802 -1.2236 7 8 6.1779 -2.8866 -0.2200 8 14 4.2470 -3.3416 -2.0509 9 1 4.9950 -4.4599 -2.6795 10 1 3.3041 -3.8829 -1.0393 11 1 3.4864 -2.6075 -3.0938 12 6 5.3751 0.0013 0.0015 13 6 4.6858 1.0476 0.5884 14 6 5.4435 2.1836 1.2258 15 7 5.6900 3.2303 0.2251 16 6 6.5912 2.7482 -0.8301 17 6 6.6748 3.8018 -1.9458 18 7 7.0586 5.0859 -1.3399 19 6 8.0886 5.8025 -1.8317 20 8 8.3259 6.9096 -1.3879 21 6 8.9035 5.2604 -2.8771 22 6 9.5749 -4.8086 3.7365 23 6 10.4110 4.2574 -4.8073 24 6 9.2301 4.4383 -5.7633 25 6 9.4802 5.4618 -4.6528 26 6 6.2848 5.5699 -0.1866 27 1 5.2789 5.8402 -0.5080 28 6 6.9763 6.7926 0.4196 29 6 6.2128 4.4495 0.8562 30 6 3.3062 1.0505 0.5961 31 1 -1.0500 -0.0006 -0.0009 32 1 2.7710 -1.8687 -1.0492 33 1 6.1381 -1.7829 -1.9660 34 1 6.6916 -3.6323 -0.5594 35 1 6.4551 0.0014 0.0022 36 1 6.3954 1.8157 1.6087 37 1 4.8569 2.5964 2.0465 38 1 7.5831 2.5780 -0.4116 39 1 6.2043 1.8154 -1.2407 40 1 5.7047 3.9021 -2.4325 41 1 7.4255 3.5034 -2.6776 42 1 11.4104 4.4411 -5.2017 43 1 9.4526 4.7411 -6.7864 44 1 8.3801 3.7663 -5.6460 45 1 8.7945 5.4626 -3.8055 46 1 9.8674 6.4379 -4.9450 47 1 6.9108 7.6294 -0.2759 48 1 6.4869 7.0597 1.3563 49 1 8.0240 6.5601 0.6105 50 1 7.2099 4.2556 1.2513 51 1 5.5518 4.7508 1.6689 52 1 2.7693 1.8654 1.0587 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_275030_16591384_12659064_16591380.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 16:01:23 Heat of formation + Delta-G solvation = 670.486230 kcal Electronic energy + Delta-G solvation = -32121.581111 eV Core-core repulsion = 27967.175554 eV Total energy + Delta-G solvation = -4154.405557 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 366.186 amu Computer time = 2.32 seconds Orbital eigenvalues (eV) -40.99770 -40.24712 -38.22976 -37.43721 -36.36337 -35.42087 -34.47641 -33.42569 -32.78095 -31.27081 -29.29074 -27.50516 -27.17051 -26.66286 -25.12540 -23.95642 -23.78360 -23.45456 -22.64570 -21.31671 -21.08147 -20.33025 -19.28200 -18.42224 -18.23595 -17.48927 -16.86764 -16.83015 -16.53160 -16.37003 -16.01504 -15.66634 -15.46106 -15.34633 -15.15020 -15.13761 -14.90079 -14.36665 -14.00644 -13.97222 -13.78603 -13.45533 -13.35174 -13.13988 -12.91551 -12.81210 -12.66785 -12.44245 -12.33122 -12.16765 -12.00766 -11.94145 -11.92187 -11.75932 -11.66954 -11.55656 -11.32155 -10.81345 -10.19068 -9.90360 -9.72083 -9.56396 -9.40389 -9.21525 -8.79492 -6.61187 -6.15947 -5.60928 -3.09336 -3.08950 -3.08351 0.01584 0.32561 1.27534 1.49138 1.57950 1.75212 1.78721 2.00877 2.12659 2.84681 3.15315 3.27266 3.31885 3.43753 3.61262 3.79579 3.96991 4.04437 4.10045 4.13062 4.19914 4.30104 4.38331 4.40478 4.43713 4.45714 4.54097 4.58674 4.62897 4.64996 4.68036 4.74393 4.80067 4.86494 4.89378 5.02074 5.08203 5.18491 5.22400 5.24977 5.40395 5.46160 5.46583 5.51853 5.60550 5.66564 5.68267 5.76375 5.98068 6.13858 6.30452 6.36083 6.54483 6.59434 6.82816 7.07022 7.38074 7.82450 8.73426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.196 4.196 3 C -0.005 4.005 4 C -0.115 4.115 5 C -0.077 4.077 6 C -0.051 4.051 7 O -0.536 6.536 8 Si 0.954 3.046 9 H -0.234 1.234 10 H -0.258 1.258 11 H -0.304 1.304 12 C -0.067 4.067 13 C -0.073 4.073 14 C 0.097 3.903 15 N -0.545 5.545 16 C 0.071 3.929 17 C 0.124 3.876 18 N -0.624 5.624 19 C 0.466 3.534 20 O -0.740 6.740 21 C -0.840 4.840 22 C 2.000 2.000 23 C -0.555 4.555 24 C -0.162 4.162 25 C -0.240 4.240 26 C 0.138 3.862 27 H 0.045 0.955 28 C -0.104 4.104 29 C 0.073 3.927 30 C -0.080 4.080 31 H 0.254 0.746 32 H 0.122 0.878 33 H 0.095 0.905 34 H 0.402 0.598 35 H 0.154 0.846 36 H 0.071 0.929 37 H 0.098 0.902 38 H 0.037 0.963 39 H 0.110 0.890 40 H 0.030 0.970 41 H 0.079 0.921 42 H -0.075 1.075 43 H 0.000 1.000 44 H 0.084 0.916 45 H 0.255 0.745 46 H -0.094 1.094 47 H 0.019 0.981 48 H 0.072 0.928 49 H 0.023 0.977 50 H 0.029 0.971 51 H 0.112 0.888 52 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.048 -101.901 69.982 123.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.196 4.196 3 C -0.005 4.005 4 C -0.133 4.133 5 C -0.077 4.077 6 C -0.164 4.164 7 O -0.345 6.345 8 Si 0.782 3.218 9 H -0.157 1.157 10 H -0.182 1.182 11 H -0.231 1.231 12 C -0.085 4.085 13 C -0.073 4.073 14 C -0.029 4.029 15 N -0.270 5.270 16 C -0.058 4.058 17 C 0.000 4.000 18 N -0.358 5.358 19 C 0.289 3.711 20 O -0.645 6.645 21 C -0.854 4.854 22 C 2.000 2.000 23 C -0.573 4.573 24 C -0.198 4.198 25 C -0.260 4.260 26 C 0.034 3.966 27 H 0.063 0.937 28 C -0.162 4.162 29 C -0.056 4.056 30 C -0.098 4.098 31 H 0.270 0.730 32 H 0.139 0.861 33 H 0.113 0.887 34 H 0.253 0.747 35 H 0.172 0.828 36 H 0.089 0.911 37 H 0.116 0.884 38 H 0.055 0.945 39 H 0.128 0.872 40 H 0.048 0.952 41 H 0.097 0.903 42 H -0.056 1.056 43 H 0.017 0.983 44 H 0.103 0.897 45 H 0.264 0.736 46 H -0.077 1.077 47 H 0.038 0.962 48 H 0.090 0.910 49 H 0.042 0.958 50 H 0.048 0.952 51 H 0.130 0.870 52 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 0.866 -101.354 69.875 123.109 hybrid contribution 0.976 4.068 -2.478 4.862 sum 1.841 -97.286 67.397 118.365 Atomic orbital electron populations 1.25772 0.96689 0.97670 0.97767 1.20579 0.93006 1.02996 1.02982 1.15975 0.86720 0.96464 1.01383 1.21118 0.94452 0.97988 0.99696 1.19310 0.91744 0.96853 0.99782 1.24202 1.01181 0.95949 0.95031 1.86246 1.65841 1.48623 1.33834 0.85682 0.79079 0.78916 0.78169 1.15675 1.18218 1.23118 1.21210 1.01183 0.91443 0.94670 1.19726 0.92823 0.95431 0.99321 1.21128 0.99580 0.89152 0.93041 1.61858 1.47109 1.04971 1.13013 1.22395 0.94304 0.97199 0.91852 1.21628 0.98083 0.83479 0.96790 1.47640 1.29899 1.24377 1.33877 1.19494 0.79672 0.81300 0.90673 1.90299 1.76802 1.26773 1.70634 1.53151 1.34938 1.12486 0.84861 1.99995 0.00000 0.00004 0.00001 1.45157 0.78460 1.21311 1.12375 1.22430 1.09142 1.00917 0.87315 1.26219 1.17544 0.88195 0.94033 1.21246 0.93318 0.94708 0.87280 0.93669 1.21679 0.98659 0.97396 0.98428 1.22301 0.98578 0.89525 0.95164 1.21183 0.94148 0.96442 0.98065 0.72986 0.86058 0.88746 0.74712 0.82834 0.91117 0.88402 0.94496 0.87189 0.95201 0.90292 1.05639 0.98259 0.89739 0.73626 1.07696 0.96197 0.90987 0.95798 0.95235 0.86967 0.85962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.37 19.25 74.32 1.43 1.07 16 2 C -0.20 -1.23 13.24 30.01 0.40 -0.83 16 3 C -0.01 -0.03 5.72 -21.41 -0.12 -0.15 16 4 C -0.11 -0.02 8.37 22.52 0.19 0.17 16 5 C -0.08 0.42 5.38 -19.90 -0.11 0.31 16 6 C -0.05 0.77 2.79 71.24 0.20 0.97 16 7 O -0.54 15.75 12.81 -148.98 -1.91 13.85 16 8 Si 0.95 -10.54 25.13 68.60 1.72 -8.81 16 9 H -0.23 3.53 7.11 99.48 0.71 4.24 16 10 H -0.26 2.70 7.04 99.48 0.70 3.40 16 11 H -0.30 -0.10 7.11 99.48 0.71 0.61 16 12 C -0.07 0.28 7.49 22.32 0.17 0.45 16 13 C -0.07 -0.09 4.88 -19.90 -0.10 -0.19 16 14 C 0.10 0.34 5.12 85.56 0.44 0.77 16 15 N -0.54 -10.18 4.62 -898.90 -4.15 -14.33 16 16 C 0.07 1.78 5.35 86.53 0.46 2.24 16 17 C 0.12 5.63 6.54 86.50 0.57 6.20 16 18 N -0.62 -34.94 3.00 -802.11 -2.41 -37.35 16 19 C 0.47 35.39 7.33 85.49 0.63 36.01 16 20 O -0.74 -59.91 12.80 -4.08 -0.05 -59.96 16 21 C -0.84 -72.27 13.90 47.52 0.66 -71.61 16 22 C 2.00 -315.66 36.32 113.37 4.12 -311.54 16 23 C -0.55 -48.11 14.81 30.59 0.45 -47.66 16 24 C -0.16 -12.59 10.53 30.62 0.32 -12.27 16 25 C -0.24 -21.57 7.94 9.07 0.07 -21.50 16 26 C 0.14 5.82 3.65 44.96 0.16 5.99 16 27 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 28 C -0.10 -4.80 7.63 71.98 0.55 -4.25 16 29 C 0.07 1.79 4.91 86.38 0.42 2.21 16 30 C -0.08 -0.36 9.40 22.52 0.21 -0.15 16 31 H 0.25 -1.52 7.80 -4.42 -0.03 -1.56 16 32 H 0.12 -0.15 4.86 -2.92 -0.01 -0.16 16 33 H 0.09 -1.37 7.96 -2.39 -0.02 -1.39 16 34 H 0.40 -17.17 8.74 -74.05 -0.65 -17.82 16 35 H 0.15 -1.38 7.93 -2.91 -0.02 -1.41 16 36 H 0.07 -0.16 8.07 -2.39 -0.02 -0.18 16 37 H 0.10 0.03 7.91 -2.39 -0.02 0.01 16 38 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.11 1.84 5.65 -2.38 -0.01 1.83 16 40 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.08 4.45 6.40 -2.39 -0.02 4.44 16 42 H -0.07 -6.65 8.14 -2.39 -0.02 -6.67 16 43 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 44 H 0.08 5.90 8.14 -2.39 -0.02 5.88 16 45 H 0.26 22.84 1.03 -110.44 -0.11 22.73 16 46 H -0.09 -8.96 8.14 -2.39 -0.02 -8.98 16 47 H 0.02 1.09 6.60 -2.38 -0.02 1.08 16 48 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 49 H 0.02 1.24 6.96 -2.39 -0.02 1.23 16 50 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 51 H 0.11 1.74 7.99 -2.39 -0.02 1.72 16 52 H 0.12 0.65 8.06 -2.91 -0.02 0.63 16 Total: 0.00 -508.92 449.40 5.27 -503.65 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: 0.95 Total: 16.72 kcal Atomic # 6 Polarization: -424.88 SS G_CDS: 11.12 Total: -413.76 kcal Atomic # 7 Polarization: -45.12 SS G_CDS: -6.56 Total: -51.68 kcal Atomic # 8 Polarization: -44.15 SS G_CDS: -1.96 Total: -46.12 kcal Atomic # 14 Polarization: -10.54 SS G_CDS: 1.72 Total: -8.81 kcal Total: -508.92 5.27 -503.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_275030_16591384_12659064_16591380.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1174.137 kcal (2) G-P(sol) polarization free energy of solvation -508.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 665.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -503.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 670.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.32 seconds