Wall clock time and date at job start Sat Mar 6 2021 15:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47079 * 110.20508 * 3 2 1 5 5 C 1.52993 * 109.47130 * 179.97438 * 4 3 2 6 6 C 1.50707 * 109.47306 * 179.97438 * 5 4 3 7 7 O 1.21282 * 119.99772 * 0.02562 * 6 5 4 8 8 N 1.34770 * 120.00279 * 179.97438 * 6 5 4 9 9 C 1.47083 * 120.88303 * 5.58809 * 8 6 5 10 10 C 1.53240 * 108.52370 * 231.16351 * 9 8 6 11 11 N 1.46901 * 109.33692 * 306.16754 * 10 9 8 12 12 C 1.46896 * 110.99896 * 187.25233 * 11 10 9 13 13 C 1.50711 * 109.47194 * 45.69860 * 12 11 10 14 14 C 1.37952 * 119.92585 * 269.72830 * 13 12 11 15 15 C 1.39558 * 119.85087 * 179.73079 * 14 13 12 16 16 C 1.43198 * 120.14222 * 180.24604 * 15 14 13 17 17 C 9.64452 * 153.17170 * 47.11214 * 3 1 2 18 18 C 1.39522 * 119.71985 * 0.55938 * 15 14 13 19 19 C 1.38003 * 119.85171 * 359.70956 * 18 15 14 20 20 C 1.50695 * 119.92575 * 180.02562 * 19 18 15 21 21 O 1.42906 * 109.46762 * 244.98079 * 20 19 18 22 22 Si 1.86302 * 109.47272 * 4.97610 * 20 19 18 23 23 H 1.48502 * 109.46983 * 60.00202 * 22 20 19 24 24 H 1.48500 * 109.47180 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47228 * 300.00233 * 22 20 19 26 26 C 1.38320 * 120.13968 * 0.02562 * 19 18 15 27 27 C 1.46895 * 111.26810 * 63.10327 * 11 10 9 28 28 C 1.47077 * 120.88335 * 185.56251 * 8 6 5 29 29 H 1.09004 * 109.62957 * 248.54665 * 28 8 6 30 30 C 1.52998 * 109.62767 * 9.13025 * 28 8 6 31 31 H 4.44647 * 5.63281 * 180.02562 * 4 1 2 32 32 H 1.09000 * 109.47334 * 350.20148 * 3 2 1 33 33 H 1.09005 * 109.46981 * 230.20305 * 3 2 1 34 34 H 1.09000 * 109.47332 * 59.99638 * 4 3 2 35 35 H 1.09005 * 109.47047 * 299.99756 * 4 3 2 36 36 H 1.09000 * 109.47211 * 59.99684 * 5 4 3 37 37 H 1.08999 * 109.47188 * 299.99430 * 5 4 3 38 38 H 1.08997 * 109.63033 * 111.44586 * 9 8 6 39 39 H 1.09008 * 109.62754 * 350.86902 * 9 8 6 40 40 H 1.09003 * 109.49349 * 186.20586 * 10 9 8 41 41 H 1.08998 * 109.51568 * 66.13915 * 10 9 8 42 42 H 1.08999 * 109.47382 * 165.69451 * 12 11 10 43 43 H 1.09004 * 109.47489 * 285.70162 * 12 11 10 44 44 H 1.07997 * 120.07248 * 359.97438 * 14 13 12 45 45 H 9.94577 * 147.93340 * 52.59985 * 3 1 2 46 46 H 1.07995 * 120.07279 * 179.73284 * 18 15 14 47 47 H 1.08999 * 109.47292 * 124.97848 * 20 19 18 48 48 H 0.96699 * 114.00189 * 59.99789 * 21 20 19 49 49 H 1.08001 * 119.85099 * 179.97438 * 26 19 18 50 50 H 1.09004 * 109.49216 * 176.93194 * 27 11 10 51 51 H 1.09004 * 109.51541 * 56.87240 * 27 11 10 52 52 H 1.09007 * 109.47286 * 171.17226 * 30 28 8 53 53 H 1.09003 * 109.46939 * 291.17551 * 30 28 8 54 54 H 1.09003 * 109.47413 * 51.17497 * 30 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1558 0.4991 -1.3537 5 6 4.6857 0.5004 -1.3535 6 6 5.1879 0.9908 -2.6872 7 8 4.3996 1.3084 -3.5524 8 7 6.5128 1.0773 -2.9180 9 6 7.4850 0.5849 -1.9301 10 6 8.5091 1.6926 -1.6610 11 7 9.0894 2.1384 -2.9348 12 6 10.1971 3.0764 -2.7089 13 6 11.0972 2.5395 -1.6258 14 6 10.8601 2.8697 -0.3075 15 6 11.6911 2.3671 0.6947 16 6 11.4476 2.7015 2.0656 17 6 11.2531 -2.9595 -3.1892 18 6 12.7642 1.5427 0.3547 19 6 12.9937 1.2246 -0.9684 20 6 14.1519 0.3339 -1.3375 21 8 15.0940 1.0753 -2.1153 22 14 14.9778 -0.2855 0.2133 23 1 13.9988 -1.0559 1.0216 24 1 16.1195 -1.1627 -0.1504 25 1 15.4738 0.8688 1.0049 26 6 12.1630 1.7216 -1.9564 27 6 8.0673 2.7312 -3.8076 28 6 7.0251 1.6661 -4.1646 29 1 7.4888 0.8894 -4.7729 30 6 5.8743 2.3121 -4.9387 31 1 -1.0501 0.0001 0.0003 32 1 3.0098 -1.0118 0.1749 33 1 3.0090 0.6586 0.7896 34 1 2.7919 1.5116 -1.5286 35 1 2.7927 -0.1589 -2.1433 36 1 5.0499 -0.5119 -1.1784 37 1 5.0484 1.1586 -0.5640 38 1 7.9928 -0.2956 -2.3235 39 1 6.9691 0.3304 -1.0042 40 1 9.2993 1.3085 -1.0159 41 1 8.0165 2.5330 -1.1719 42 1 10.7676 3.1937 -3.6302 43 1 9.7978 4.0435 -2.4031 44 1 10.0309 3.5124 -0.0513 45 1 11.0752 -3.2044 -4.1947 46 1 13.4135 1.1541 1.1252 47 1 13.7878 -0.5134 -1.9185 48 1 15.4603 1.8457 -1.6599 49 1 12.3472 1.4700 -2.9905 50 1 8.5372 3.1004 -4.7192 51 1 7.5804 3.5572 -3.2892 52 1 6.2749 2.8805 -5.7781 53 1 5.2061 1.5358 -5.3114 54 1 5.3220 2.9805 -4.2780 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_275030_16591390_12658972_16591380.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 15:08:03 Heat of formation + Delta-G solvation = 360.549139 kcal Electronic energy + Delta-G solvation = -33052.686313 eV Core-core repulsion = 28857.529397 eV Total energy + Delta-G solvation = -4195.156916 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 368.201 amu Computer time = 2.11 seconds Orbital eigenvalues (eV) -41.67931 -40.23896 -38.98703 -37.39856 -36.63720 -35.82165 -34.30255 -32.89303 -32.38612 -32.25468 -29.86280 -28.50246 -27.54882 -26.31637 -25.55703 -25.34258 -24.72846 -24.20977 -22.90642 -21.88538 -21.09977 -19.99161 -19.22351 -18.98041 -17.81454 -17.49645 -17.27706 -16.93214 -16.82541 -16.44028 -16.12092 -16.08306 -15.86914 -15.83402 -15.58811 -15.31786 -15.13113 -14.56744 -14.51330 -14.39674 -13.86606 -13.66750 -13.55578 -13.44581 -13.21964 -13.16024 -12.89293 -12.72208 -12.59540 -12.50078 -12.40755 -12.32901 -12.32208 -12.17366 -12.14016 -11.97339 -11.96648 -11.59250 -11.56735 -11.17008 -11.01018 -10.23621 -10.20552 -9.89334 -9.82475 -9.78296 -9.47996 -9.23188 -6.20265 -1.79574 -1.77479 0.79174 0.99039 1.30781 1.39822 1.46620 1.58588 1.58999 1.78479 1.88949 1.98527 2.11653 2.78760 2.92623 3.35084 3.40893 3.53787 3.68371 3.74697 3.84341 3.93306 4.02643 4.07781 4.12234 4.14145 4.19111 4.22705 4.35080 4.40220 4.47533 4.52621 4.54369 4.60936 4.61556 4.63004 4.67101 4.74528 4.75099 4.76451 4.84803 4.91749 4.95068 4.97436 5.09509 5.15783 5.18024 5.24609 5.30759 5.46975 5.56239 5.75745 5.84454 5.89556 5.93635 6.14801 6.19291 6.30401 6.39967 6.67020 6.68746 6.85438 7.17858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.216 4.216 3 C -0.012 4.012 4 C -0.091 4.091 5 C -0.136 4.136 6 C 0.508 3.492 7 O -0.572 6.572 8 N -0.615 5.615 9 C 0.122 3.878 10 C 0.036 3.964 11 N -0.503 5.503 12 C 0.104 3.896 13 C -0.008 4.008 14 C -0.282 4.282 15 C -0.166 4.166 16 C -0.334 4.334 17 C 0.974 3.026 18 C -0.299 4.299 19 C -0.038 4.038 20 C -0.045 4.045 21 O -0.551 6.551 22 Si 0.965 3.035 23 H -0.260 1.260 24 H -0.250 1.250 25 H -0.320 1.320 26 C -0.252 4.252 27 C 0.042 3.958 28 C 0.160 3.840 29 H 0.105 0.895 30 C -0.132 4.132 31 H 0.236 0.764 32 H 0.112 0.888 33 H 0.097 0.903 34 H 0.044 0.956 35 H 0.061 0.939 36 H 0.133 0.867 37 H 0.104 0.896 38 H 0.118 0.882 39 H 0.108 0.892 40 H 0.094 0.906 41 H -0.005 1.005 42 H 0.097 0.903 43 H 0.003 0.997 44 H 0.046 0.954 45 H 0.026 0.974 46 H 0.070 0.930 47 H 0.169 0.831 48 H 0.381 0.619 49 H 0.129 0.871 50 H 0.100 0.900 51 H 0.007 0.993 52 H 0.059 0.941 53 H 0.068 0.932 54 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.003 -28.123 -16.207 32.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.216 4.216 3 C -0.048 4.048 4 C -0.129 4.129 5 C -0.176 4.176 6 C 0.298 3.702 7 O -0.452 6.452 8 N -0.349 5.349 9 C 0.000 4.000 10 C -0.093 4.093 11 N -0.227 5.227 12 C -0.023 4.023 13 C -0.009 4.009 14 C -0.301 4.301 15 C -0.166 4.166 16 C -0.334 4.334 17 C 0.954 3.046 18 C -0.318 4.318 19 C -0.039 4.039 20 C -0.157 4.157 21 O -0.357 6.357 22 Si 0.796 3.204 23 H -0.184 1.184 24 H -0.174 1.174 25 H -0.249 1.249 26 C -0.270 4.270 27 C -0.087 4.087 28 C 0.057 3.943 29 H 0.122 0.878 30 C -0.190 4.190 31 H 0.253 0.747 32 H 0.130 0.870 33 H 0.115 0.885 34 H 0.063 0.937 35 H 0.080 0.920 36 H 0.151 0.849 37 H 0.122 0.878 38 H 0.136 0.864 39 H 0.126 0.874 40 H 0.112 0.888 41 H 0.013 0.987 42 H 0.115 0.885 43 H 0.022 0.978 44 H 0.064 0.936 45 H 0.046 0.954 46 H 0.088 0.912 47 H 0.186 0.814 48 H 0.229 0.771 49 H 0.147 0.853 50 H 0.118 0.882 51 H 0.025 0.975 52 H 0.078 0.922 53 H 0.087 0.913 54 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 2.054 -29.192 -16.775 33.731 hybrid contribution -0.896 2.312 -0.998 2.673 sum 1.158 -26.879 -17.773 32.245 Atomic orbital electron populations 1.25711 0.97175 1.00911 1.00269 1.23870 0.95907 1.00791 1.01018 1.18878 0.83556 1.04321 0.98065 1.21141 0.93999 1.01265 0.96495 1.21780 0.96122 1.05517 0.94147 1.21198 0.81721 0.77124 0.90160 1.90759 1.56527 1.50619 1.47263 1.48450 1.05572 1.60862 1.20047 1.22086 0.88734 0.96308 0.92858 1.22644 0.98001 0.97324 0.91343 1.62187 1.08376 1.37931 1.14175 1.20992 0.91718 0.92019 0.97561 1.19251 0.95251 0.95388 0.90962 1.19347 1.04351 1.13289 0.93084 1.20950 0.97278 0.98604 0.99728 1.81991 0.55385 0.97002 0.99039 1.85814 0.03473 0.05603 1.09743 1.19605 1.03419 1.12623 0.96125 1.19884 0.95860 0.96734 0.91380 1.24752 0.88902 0.97365 1.04669 1.86339 1.59439 1.45185 1.44732 0.85571 0.79274 0.78251 0.77313 1.18425 1.17431 1.24896 1.19703 0.99633 1.09948 0.97715 1.22663 0.92639 0.95371 0.98039 1.21261 0.92992 0.94983 0.85035 0.87758 1.22014 0.96837 1.01003 0.99102 0.74742 0.86965 0.88482 0.93710 0.91995 0.84881 0.87773 0.86434 0.87428 0.88805 0.98667 0.88456 0.97849 0.93554 0.95370 0.91171 0.81355 0.77129 0.85304 0.88175 0.97453 0.92242 0.91289 0.94870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -1.02 19.25 74.32 1.43 0.41 16 2 C -0.22 -1.10 13.34 31.13 0.42 -0.68 16 3 C -0.01 0.02 5.70 28.79 0.16 0.18 16 4 C -0.09 -0.05 4.46 30.59 0.14 0.08 16 5 C -0.14 0.60 4.06 29.85 0.12 0.72 16 6 C 0.51 1.00 7.47 87.66 0.66 1.65 16 7 O -0.57 -5.80 11.70 -3.04 -0.04 -5.84 16 8 N -0.62 1.26 3.01 -794.08 -2.39 -1.13 16 9 C 0.12 -0.91 6.51 86.35 0.56 -0.35 16 10 C 0.04 0.12 4.78 86.38 0.41 0.53 16 11 N -0.50 -0.97 4.77 -899.80 -4.29 -5.26 16 12 C 0.10 0.97 5.42 85.56 0.46 1.43 16 13 C -0.01 -0.13 4.11 -19.90 -0.08 -0.21 16 14 C -0.28 -7.68 7.48 22.52 0.17 -7.51 16 15 C -0.17 -5.39 5.72 -21.41 -0.12 -5.52 16 16 C -0.33 -12.84 25.13 69.07 1.74 -11.10 16 17 C 0.97 -66.15 31.14 113.37 3.53 -62.62 16 18 C -0.30 -7.30 8.37 22.52 0.19 -7.11 16 19 C -0.04 -0.44 5.35 -19.90 -0.11 -0.54 16 20 C -0.04 0.02 2.80 71.23 0.20 0.22 16 21 O -0.55 -1.22 12.83 -148.98 -1.91 -3.14 16 22 Si 0.96 4.38 25.13 68.60 1.72 6.11 16 23 H -0.26 -1.46 7.11 99.48 0.71 -0.75 16 24 H -0.25 -0.26 7.11 99.48 0.71 0.45 16 25 H -0.32 -5.17 7.04 99.48 0.70 -4.47 16 26 C -0.25 -2.39 9.33 22.32 0.21 -2.18 16 27 C 0.04 0.07 4.87 86.38 0.42 0.49 16 28 C 0.16 -0.24 3.65 44.96 0.16 -0.08 16 29 H 0.10 -0.74 8.14 -2.38 -0.02 -0.76 16 30 C -0.13 -0.48 7.64 71.98 0.55 0.07 16 31 H 0.24 -0.41 7.80 -4.41 -0.03 -0.44 16 32 H 0.11 -0.75 8.14 -2.39 -0.02 -0.77 16 33 H 0.10 -0.30 8.14 -2.38 -0.02 -0.32 16 34 H 0.04 0.29 8.10 -2.39 -0.02 0.27 16 35 H 0.06 0.18 8.10 -2.38 -0.02 0.16 16 36 H 0.13 -1.62 7.78 -2.39 -0.02 -1.64 16 37 H 0.10 -0.53 7.89 -2.39 -0.02 -0.55 16 38 H 0.12 -2.00 8.14 -2.39 -0.02 -2.02 16 39 H 0.11 -1.10 6.01 -2.38 -0.01 -1.12 16 40 H 0.09 0.73 5.55 -2.39 -0.01 0.72 16 41 H -0.01 -0.06 8.14 -2.39 -0.02 -0.08 16 42 H 0.10 0.51 8.08 -2.39 -0.02 0.49 16 43 H 0.00 0.05 8.02 -2.39 -0.02 0.03 16 44 H 0.05 1.48 8.06 -2.91 -0.02 1.46 16 45 H 0.03 -1.85 7.80 -4.41 -0.03 -1.88 16 46 H 0.07 1.82 4.86 -2.91 -0.01 1.80 16 47 H 0.17 -2.58 7.96 -2.39 -0.02 -2.60 16 48 H 0.38 0.84 8.70 -74.06 -0.64 0.20 16 49 H 0.13 0.23 8.06 -2.91 -0.02 0.21 16 50 H 0.10 -0.11 8.11 -2.39 -0.02 -0.13 16 51 H 0.01 0.06 8.14 -2.39 -0.02 0.04 16 52 H 0.06 0.05 8.14 -2.38 -0.02 0.03 16 53 H 0.07 0.44 6.64 -2.39 -0.02 0.42 16 54 H 0.03 0.34 6.93 -2.39 -0.02 0.32 16 Total: 0.00 -117.61 456.72 5.30 -112.31 By element: Atomic # 1 Polarization: -11.93 SS G_CDS: 0.99 Total: -10.94 kcal Atomic # 6 Polarization: -103.33 SS G_CDS: 11.22 Total: -92.11 kcal Atomic # 7 Polarization: 0.29 SS G_CDS: -6.68 Total: -6.40 kcal Atomic # 8 Polarization: -7.03 SS G_CDS: -1.95 Total: -8.97 kcal Atomic # 14 Polarization: 4.38 SS G_CDS: 1.72 Total: 6.11 kcal Total: -117.61 5.30 -112.31 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_275030_16591390_12658972_16591380.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 472.863 kcal (2) G-P(sol) polarization free energy of solvation -117.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 355.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -112.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 360.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.11 seconds