Wall clock time and date at job start Sat Mar 6 2021 15:41:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39521 * 120.14039 * 99.07987 * 3 2 1 5 5 C 1.38001 * 119.85323 * 180.02562 * 4 3 2 6 6 C 1.50695 * 119.92700 * 179.97438 * 5 4 3 7 7 O 1.42898 * 109.47286 * 119.99788 * 6 5 4 8 8 Si 1.86305 * 109.47200 * 359.97438 * 6 5 4 9 9 H 1.48497 * 109.47416 * 300.00203 * 8 6 5 10 10 H 1.48502 * 109.46936 * 60.00371 * 8 6 5 11 11 H 1.48498 * 109.47141 * 179.97438 * 8 6 5 12 12 C 1.38319 * 120.13966 * 0.27193 * 5 4 3 13 13 C 1.38367 * 120.28825 * 359.45374 * 12 5 4 14 14 C 1.50701 * 119.92816 * 180.27562 * 13 12 5 15 15 N 1.46896 * 109.46919 * 270.27272 * 14 13 12 16 16 C 1.46904 * 111.00415 * 66.04872 * 15 14 13 17 17 C 1.53241 * 109.34032 * 187.25514 * 16 15 14 18 18 N 1.47077 * 108.51917 * 306.16693 * 17 16 15 19 19 C 1.34778 * 120.88182 * 231.20636 * 18 17 16 20 20 O 1.21615 * 120.00358 * 175.21143 * 19 18 17 21 21 C 1.43206 * 119.99891 * 355.21566 * 19 18 17 22 22 C 9.28217 * 136.39368 * 166.79943 * 3 1 2 23 23 C 9.89640 * 123.11203 * 54.69203 * 4 1 2 24 24 C 1.53005 * 109.47062 * 136.63123 * 23 22 21 25 25 C 1.53002 * 109.47209 * 256.62586 * 23 22 21 26 26 C 1.47081 * 118.23937 * 51.18707 * 18 17 16 27 27 H 1.08996 * 109.63131 * 68.71860 * 26 18 17 28 28 C 1.53005 * 109.62702 * 189.10650 * 26 18 17 29 29 C 1.46908 * 110.99889 * 190.35003 * 15 14 13 30 30 C 1.37947 * 120.14269 * 0.54821 * 13 12 5 31 31 H 4.52051 * 14.02062 * 0.02562 * 4 2 1 32 32 H 1.07994 * 120.07167 * 0.04142 * 4 3 2 33 33 H 1.08997 * 109.47248 * 240.00469 * 6 5 4 34 34 H 0.96701 * 114.00458 * 179.97438 * 7 6 5 35 35 H 1.08000 * 119.85173 * 179.72485 * 12 5 4 36 36 H 1.09002 * 109.47053 * 30.27028 * 14 13 12 37 37 H 1.09000 * 109.47358 * 150.27190 * 14 13 12 38 38 H 1.09001 * 109.48372 * 307.21180 * 16 15 14 39 39 H 1.08998 * 109.49082 * 67.29164 * 16 15 14 40 40 H 1.09001 * 109.62752 * 65.87609 * 17 16 15 41 41 H 1.08997 * 109.62701 * 186.46125 * 17 16 15 42 42 H 1.08999 * 109.47289 * 16.62953 * 23 22 21 43 43 H 1.09004 * 109.47126 * 59.99300 * 24 23 22 44 44 H 1.08997 * 109.47020 * 180.02562 * 24 23 22 45 45 H 1.09003 * 109.46535 * 299.99666 * 24 23 22 46 46 H 1.08997 * 109.47623 * 180.02562 * 25 23 22 47 47 H 1.09004 * 109.46943 * 300.00678 * 25 23 22 48 48 H 1.08997 * 109.46858 * 60.00317 * 25 23 22 49 49 H 1.08996 * 109.47240 * 53.57521 * 28 26 18 50 50 H 1.09002 * 109.46977 * 173.57013 * 28 26 18 51 51 H 1.09002 * 109.47241 * 293.56611 * 28 26 18 52 52 H 1.09007 * 109.49058 * 292.70379 * 29 15 14 53 53 H 1.08998 * 109.49297 * 52.77918 * 29 15 14 54 54 H 1.07995 * 120.07375 * 179.71008 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3065 0.1914 -1.1915 5 6 4.6864 0.1904 -1.1847 6 6 5.4447 0.3956 -2.4707 7 8 6.2664 1.5593 -2.3587 8 14 4.2393 0.6187 -3.8736 9 1 3.3857 -0.5909 -3.9899 10 1 3.3848 1.8039 -3.6083 11 1 4.9865 0.8215 -5.1408 12 6 5.3750 -0.0048 -0.0011 13 6 4.6863 -0.1889 1.1848 14 6 5.4448 -0.3946 2.4707 15 7 5.6913 -1.8290 2.6696 16 6 6.5985 -2.3549 1.6408 17 6 6.6865 -3.8791 1.7729 18 7 7.0591 -4.2073 3.1573 19 6 8.0886 -5.0371 3.4184 20 8 8.4385 -5.2293 4.5671 21 6 8.7706 -5.6923 2.3430 22 6 9.3256 6.2350 -1.4619 23 6 10.0275 -6.9073 0.3495 24 6 9.7066 -7.6212 -0.9652 25 6 11.4390 -7.2850 0.8033 26 6 6.2789 -3.6057 4.2493 27 1 5.2733 -4.0261 4.2556 28 6 6.9635 -3.8905 5.5876 29 6 6.2069 -2.0923 4.0197 30 6 3.3068 -0.1901 1.1917 31 1 -1.0500 0.0005 0.0002 32 1 2.7699 0.3397 -2.1168 33 1 6.0715 -0.4745 -2.6658 34 1 6.7848 1.7527 -3.1518 35 1 6.4550 -0.0091 -0.0019 36 1 6.3966 0.1340 2.4196 37 1 4.8586 -0.0077 3.3042 38 1 6.2167 -2.0968 0.6530 39 1 7.5894 -1.9205 1.7732 40 1 5.7190 -4.3233 1.5390 41 1 7.4437 -4.2628 1.0891 42 1 9.3082 -7.2081 1.1112 43 1 10.4258 -7.3204 -1.7270 44 1 9.7637 -8.6995 -0.8165 45 1 8.7010 -7.3522 -1.2886 46 1 11.4968 -8.3633 0.9515 47 1 12.1583 -6.9841 0.0415 48 1 11.6677 -6.7764 1.7399 49 1 8.0026 -3.5646 5.5408 50 1 6.4485 -3.3495 6.3815 51 1 6.9270 -4.9602 5.7940 52 1 7.2033 -1.6615 4.1190 53 1 5.5413 -1.6437 4.7572 54 1 2.7704 -0.3385 2.1171 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_275030_16591390_12659054_16591380.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 15:41:54 Heat of formation + Delta-G solvation = 561.359979 kcal Electronic energy + Delta-G solvation = -32215.606995 eV Core-core repulsion = 28029.157891 eV Total energy + Delta-G solvation = -4186.449104 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 368.201 amu Computer time = 2.64 seconds Orbital eigenvalues (eV) -41.11514 -40.31512 -38.25419 -37.50475 -35.52182 -34.55860 -33.66355 -32.89325 -32.67031 -31.34616 -29.42630 -27.62196 -27.01014 -26.75849 -25.70037 -25.03648 -24.05348 -23.82945 -23.17958 -21.38657 -21.15783 -19.44108 -19.35291 -18.36844 -18.29804 -17.58121 -16.91251 -16.78166 -16.57597 -16.14599 -15.80311 -15.75115 -15.60266 -15.38763 -15.27328 -14.99346 -14.47275 -14.16246 -14.12400 -13.90702 -13.73103 -13.55767 -13.47435 -13.24022 -13.04277 -12.95337 -12.77030 -12.61133 -12.47851 -12.45998 -12.27170 -12.20654 -12.09927 -12.06747 -11.94105 -11.82382 -11.65413 -11.40186 -11.06105 -10.38352 -10.28241 -9.80261 -9.78321 -9.51793 -9.37249 -8.97939 -7.58342 -6.22224 -5.29029 -3.13877 -3.13561 -3.12975 -0.07135 0.22996 1.21704 1.44931 1.54052 1.69636 1.73524 1.93095 2.07587 2.73270 3.01578 3.14505 3.23669 3.26282 3.52988 3.68112 3.87475 3.91597 3.98685 4.01108 4.16809 4.25880 4.29346 4.31531 4.33673 4.44206 4.47111 4.56826 4.61623 4.65827 4.71580 4.77437 4.82944 4.87833 4.97796 5.01009 5.13177 5.14249 5.19512 5.24713 5.31288 5.36329 5.37188 5.37704 5.37774 5.43580 5.53558 5.57367 5.87447 5.94138 6.05145 6.16808 6.54288 6.60370 6.99644 7.08506 7.47756 7.54301 7.94253 8.58311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.199 4.199 3 C -0.002 4.002 4 C -0.113 4.113 5 C -0.076 4.076 6 C -0.059 4.059 7 O -0.538 6.538 8 Si 0.963 3.037 9 H -0.304 1.304 10 H -0.251 1.251 11 H -0.233 1.233 12 C -0.070 4.070 13 C -0.075 4.075 14 C 0.098 3.902 15 N -0.544 5.544 16 C 0.073 3.927 17 C 0.127 3.873 18 N -0.663 5.663 19 C 0.246 3.754 20 O -0.735 6.735 21 C -0.345 4.345 22 C 2.000 2.000 23 C -0.707 4.707 24 C -0.049 4.049 25 C -0.038 4.038 26 C 0.137 3.863 27 H 0.032 0.968 28 C -0.094 4.094 29 C 0.076 3.924 30 C -0.080 4.080 31 H 0.255 0.745 32 H 0.125 0.875 33 H 0.088 0.912 34 H 0.402 0.598 35 H 0.149 0.851 36 H 0.069 0.931 37 H 0.100 0.900 38 H 0.111 0.889 39 H 0.034 0.966 40 H 0.030 0.970 41 H 0.052 0.948 42 H -0.024 1.024 43 H 0.013 0.987 44 H -0.095 1.095 45 H 0.002 0.998 46 H -0.097 1.097 47 H 0.012 0.988 48 H -0.015 1.015 49 H 0.029 0.971 50 H 0.064 0.936 51 H 0.011 0.989 52 H 0.027 0.973 53 H 0.111 0.889 54 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.111 123.088 -35.964 128.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.199 4.199 3 C -0.002 4.002 4 C -0.131 4.131 5 C -0.076 4.076 6 C -0.170 4.170 7 O -0.347 6.347 8 Si 0.789 3.211 9 H -0.231 1.231 10 H -0.175 1.175 11 H -0.157 1.157 12 C -0.088 4.088 13 C -0.075 4.075 14 C -0.028 4.028 15 N -0.269 5.269 16 C -0.055 4.055 17 C 0.003 3.997 18 N -0.400 5.400 19 C 0.083 3.917 20 O -0.646 6.646 21 C -0.357 4.357 22 C 2.000 2.000 23 C -0.725 4.725 24 C -0.104 4.104 25 C -0.093 4.093 26 C 0.033 3.967 27 H 0.050 0.950 28 C -0.152 4.152 29 C -0.052 4.052 30 C -0.099 4.099 31 H 0.271 0.729 32 H 0.143 0.857 33 H 0.106 0.894 34 H 0.253 0.747 35 H 0.167 0.833 36 H 0.087 0.913 37 H 0.118 0.882 38 H 0.129 0.871 39 H 0.052 0.948 40 H 0.049 0.951 41 H 0.070 0.930 42 H -0.005 1.005 43 H 0.031 0.969 44 H -0.077 1.077 45 H 0.021 0.979 46 H -0.079 1.079 47 H 0.031 0.969 48 H 0.004 0.996 49 H 0.048 0.952 50 H 0.083 0.917 51 H 0.031 0.969 52 H 0.045 0.955 53 H 0.129 0.871 54 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.045 122.877 -35.548 127.916 hybrid contribution 0.265 -2.278 1.631 2.814 sum 0.221 120.599 -33.917 125.278 Atomic orbital electron populations 1.25791 0.96674 0.97585 0.97316 1.20530 0.92938 1.03129 1.03261 1.15965 0.86833 1.03214 0.94218 1.21113 0.94257 1.00974 0.96747 1.19328 0.91841 1.00844 0.95586 1.24316 1.00265 0.92421 1.00038 1.86235 1.61133 1.42982 1.44308 0.85547 0.78584 0.79690 0.77240 1.23077 1.17466 1.15652 1.21164 1.00985 0.96375 0.90285 1.19703 0.92930 0.99300 0.95571 1.21140 0.99595 0.86279 0.95820 1.61814 1.46742 1.16569 1.01735 1.22269 0.94361 0.92095 0.96779 1.21372 0.97715 0.97000 0.83581 1.48364 1.34660 1.51890 1.05123 1.23463 0.86297 0.87548 0.94417 1.90390 1.74975 1.76344 1.22925 1.85853 0.86219 1.12354 0.51250 1.99996 0.00000 0.00004 0.00001 1.36389 0.85851 1.61812 0.88457 1.21039 0.95405 0.90589 1.03396 1.20764 1.04150 0.89356 0.95010 1.21130 0.92915 0.94276 0.88379 0.95027 1.21558 0.98785 0.99272 0.95566 1.22269 0.98345 0.93449 0.91178 1.21173 0.94025 0.97422 0.97266 0.72864 0.85740 0.89384 0.74689 0.83333 0.91257 0.88212 0.87065 0.94771 0.95137 0.93000 1.00530 0.96862 1.07749 0.97919 1.07940 0.96888 0.99633 0.95212 0.91734 0.96935 0.95498 0.87101 0.85946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.30 19.25 74.32 1.43 1.13 16 2 C -0.20 -1.21 13.24 30.02 0.40 -0.81 16 3 C 0.00 -0.01 5.72 -21.41 -0.12 -0.13 16 4 C -0.11 -0.02 8.37 22.52 0.19 0.17 16 5 C -0.08 0.37 5.42 -19.90 -0.11 0.26 16 6 C -0.06 0.84 2.81 71.23 0.20 1.04 16 7 O -0.54 15.21 12.75 -148.98 -1.90 13.32 16 8 Si 0.96 -11.60 25.07 68.60 1.72 -9.88 16 9 H -0.30 0.26 7.11 99.48 0.71 0.97 16 10 H -0.25 3.16 7.11 99.48 0.71 3.87 16 11 H -0.23 3.74 7.11 99.48 0.71 4.45 16 12 C -0.07 0.22 7.42 22.32 0.17 0.38 16 13 C -0.07 -0.16 4.90 -19.90 -0.10 -0.26 16 14 C 0.10 0.45 5.12 85.56 0.44 0.89 16 15 N -0.54 -10.96 4.62 -899.78 -4.16 -15.11 16 16 C 0.07 1.92 5.33 86.38 0.46 2.38 16 17 C 0.13 5.91 6.47 86.35 0.56 6.47 16 18 N -0.66 -37.68 3.01 -802.97 -2.42 -40.10 16 19 C 0.25 18.35 7.45 85.49 0.64 18.99 16 20 O -0.73 -58.41 12.59 -4.08 -0.05 -58.47 16 21 C -0.34 -28.45 18.38 69.07 1.27 -27.18 16 22 C 2.00 -317.36 36.32 113.37 4.12 -313.24 16 23 C -0.71 -58.26 9.59 30.60 0.29 -57.96 16 24 C -0.05 -3.52 9.91 71.98 0.71 -2.80 16 25 C -0.04 -2.87 9.91 71.98 0.71 -2.16 16 26 C 0.14 6.05 3.65 44.96 0.16 6.22 16 27 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 28 C -0.09 -4.52 7.61 71.98 0.55 -3.97 16 29 C 0.08 2.00 4.91 86.38 0.42 2.43 16 30 C -0.08 -0.41 9.40 22.52 0.21 -0.19 16 31 H 0.26 -1.64 7.80 -4.42 -0.03 -1.67 16 32 H 0.13 -0.21 4.87 -2.91 -0.01 -0.22 16 33 H 0.09 -1.13 7.96 -2.39 -0.02 -1.15 16 34 H 0.40 -16.65 8.74 -74.06 -0.65 -17.30 16 35 H 0.15 -1.06 7.90 -2.91 -0.02 -1.09 16 36 H 0.07 -0.06 8.07 -2.39 -0.02 -0.08 16 37 H 0.10 0.13 7.90 -2.39 -0.02 0.11 16 38 H 0.11 2.00 5.64 -2.39 -0.01 1.98 16 39 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.05 2.88 6.47 -2.39 -0.02 2.87 16 42 H -0.02 -2.19 5.40 -2.39 -0.01 -2.20 16 43 H 0.01 0.81 8.14 -2.39 -0.02 0.79 16 44 H -0.09 -7.02 8.14 -2.39 -0.02 -7.04 16 45 H 0.00 0.12 8.14 -2.39 -0.02 0.11 16 46 H -0.10 -7.54 8.14 -2.39 -0.02 -7.56 16 47 H 0.01 0.84 8.14 -2.39 -0.02 0.82 16 48 H -0.02 -1.20 8.14 -2.39 -0.02 -1.22 16 49 H 0.03 1.60 6.78 -2.39 -0.02 1.58 16 50 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 51 H 0.01 0.69 6.76 -2.39 -0.02 0.67 16 52 H 0.03 0.74 8.14 -2.38 -0.02 0.72 16 53 H 0.11 1.94 7.99 -2.39 -0.02 1.92 16 54 H 0.12 0.72 8.06 -2.91 -0.02 0.70 16 Total: 0.00 -497.52 470.45 6.82 -490.71 By element: Atomic # 1 Polarization: -13.12 SS G_CDS: 1.01 Total: -12.11 kcal Atomic # 6 Polarization: -380.96 SS G_CDS: 12.60 Total: -368.36 kcal Atomic # 7 Polarization: -48.64 SS G_CDS: -6.57 Total: -55.21 kcal Atomic # 8 Polarization: -43.20 SS G_CDS: -1.95 Total: -45.15 kcal Atomic # 14 Polarization: -11.60 SS G_CDS: 1.72 Total: -9.88 kcal Total: -497.52 6.82 -490.71 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_275030_16591390_12659054_16591380.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1052.067 kcal (2) G-P(sol) polarization free energy of solvation -497.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 554.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -490.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 561.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.64 seconds