Wall clock time and date at job start Sat Mar 6 2021 15:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39517 * 120.13921 * 264.41761 * 3 2 1 5 5 C 1.37998 * 119.85396 * 180.02562 * 4 3 2 6 6 C 1.50700 * 119.92855 * 180.02562 * 5 4 3 7 7 O 1.42890 * 109.47190 * 244.98014 * 6 5 4 8 8 Si 1.86301 * 109.47016 * 4.98261 * 6 5 4 9 9 H 1.48500 * 109.47467 * 59.99788 * 8 6 5 10 10 H 1.48505 * 109.46991 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47099 * 299.99822 * 8 6 5 12 12 C 1.38318 * 120.14199 * 0.02562 * 5 4 3 13 13 C 1.38366 * 120.28598 * 0.02562 * 12 5 4 14 14 C 1.50704 * 119.92663 * 179.97438 * 13 12 5 15 15 N 1.46902 * 109.47033 * 90.00243 * 14 13 12 16 16 C 1.46900 * 111.00206 * 66.04341 * 15 14 13 17 17 C 1.53242 * 109.33793 * 187.25261 * 16 15 14 18 18 N 1.47076 * 108.52355 * 306.17200 * 17 16 15 19 19 C 1.34774 * 120.88191 * 231.20937 * 18 17 16 20 20 O 1.21611 * 120.00257 * 175.19884 * 19 18 17 21 21 C 1.43201 * 119.99912 * 355.19299 * 19 18 17 22 22 C 8.62926 * 105.40024 * 39.07973 * 2 1 3 23 23 C 9.08395 * 96.88851 * 35.88543 * 2 1 3 24 24 C 1.53001 * 117.50204 * 25.21122 * 23 22 21 25 25 C 1.52998 * 60.00327 * 252.50963 * 24 23 22 26 26 C 1.47082 * 118.23775 * 51.18612 * 18 17 16 27 27 H 1.08997 * 109.63132 * 68.52497 * 26 18 17 28 28 C 1.52995 * 109.62636 * 188.91018 * 26 18 17 29 29 C 1.46902 * 110.99881 * 190.34984 * 15 14 13 30 30 C 1.37948 * 120.14370 * 0.24891 * 13 12 5 31 31 H 4.52054 * 14.02040 * 359.97438 * 4 2 1 32 32 H 1.08002 * 120.07584 * 0.05518 * 4 3 2 33 33 H 1.09002 * 109.46695 * 124.97763 * 6 5 4 34 34 H 0.96697 * 114.00238 * 60.00552 * 7 6 5 35 35 H 1.08005 * 119.85831 * 179.97438 * 12 5 4 36 36 H 1.08994 * 109.47190 * 329.99936 * 14 13 12 37 37 H 1.08997 * 109.46936 * 209.99658 * 14 13 12 38 38 H 1.08995 * 109.49439 * 307.21317 * 16 15 14 39 39 H 1.08997 * 109.49135 * 67.29579 * 16 15 14 40 40 H 1.09004 * 109.62907 * 65.88207 * 17 16 15 41 41 H 1.09002 * 109.62744 * 186.26365 * 17 16 15 42 42 H 1.09000 * 115.55198 * 170.91996 * 23 22 21 43 43 H 1.09003 * 117.49588 * 0.02562 * 24 23 22 44 44 H 1.08994 * 117.49928 * 145.01729 * 24 23 22 45 45 H 1.08997 * 117.49559 * 252.50930 * 25 24 23 46 46 H 1.08997 * 117.51835 * 107.47405 * 25 24 23 47 47 H 1.09004 * 109.47526 * 53.68578 * 28 26 18 48 48 H 1.09003 * 109.47078 * 173.68153 * 28 26 18 49 49 H 1.08997 * 109.47879 * 293.68597 * 28 26 18 50 50 H 1.08999 * 109.48995 * 292.69888 * 29 15 14 51 51 H 1.08996 * 109.49423 * 52.78302 * 29 15 14 52 52 H 1.08002 * 120.07465 * 179.70512 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3065 0.1183 1.2008 5 6 4.6864 0.1188 1.1939 6 6 5.4447 0.2452 2.4901 7 8 6.1758 1.4730 2.4964 8 14 4.2452 0.2293 3.9154 9 1 3.4854 -1.0466 3.9089 10 1 4.9925 0.3533 5.1928 11 1 3.3015 1.3680 3.7809 12 6 5.3751 0.0035 -0.0001 13 6 4.6863 -0.1125 -1.1945 14 6 5.4448 -0.2371 -2.4908 15 7 5.6923 -1.6562 -2.7788 16 6 4.4340 -2.3676 -3.0403 17 6 4.7148 -3.8696 -3.1561 18 7 5.7652 -4.0721 -4.1655 19 6 5.5962 -4.9513 -5.1729 20 8 6.4365 -5.0432 -6.0472 21 6 4.4271 -5.7773 -5.2138 22 6 3.4656 -6.4581 -5.2446 23 6 2.2635 -7.3066 -5.2863 24 6 0.9918 -6.7013 -5.8841 25 6 1.0964 -6.9236 -4.3740 26 6 7.0047 -3.2893 -4.0467 27 1 7.5628 -3.6181 -3.1700 28 6 7.8578 -3.4841 -5.3017 29 6 6.6338 -1.8102 -3.8959 30 6 3.3068 -0.1086 -1.2019 31 1 -1.0500 0.0005 -0.0002 32 1 2.7699 0.2084 2.1338 33 1 6.1373 -0.5906 2.5888 34 1 5.6218 2.2610 2.4120 35 1 6.4551 0.0048 -0.0002 36 1 6.3962 0.2880 -2.4069 37 1 4.8581 0.2006 -3.2984 38 1 3.7384 -2.1898 -2.2203 39 1 3.9987 -2.0061 -3.9719 40 1 5.0528 -4.2542 -2.1938 41 1 3.8062 -4.3897 -3.4595 42 1 2.4431 -8.3684 -5.4547 43 1 1.0455 -5.6749 -6.2470 44 1 0.3348 -7.3648 -6.4462 45 1 0.5080 -7.7335 -3.9427 46 1 1.2189 -6.0436 -3.7427 47 1 7.2621 -3.2545 -6.1853 48 1 8.7200 -2.8184 -5.2619 49 1 8.1991 -4.5180 -5.3524 50 1 6.1678 -1.4565 -4.8156 51 1 7.5334 -1.2281 -3.6963 52 1 2.7703 -0.1944 -2.1353 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_275030_16591390_12659064_16591380.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 15:47:45 Heat of formation + Delta-G solvation = 120.600283 kcal Electronic energy + Delta-G solvation = -32515.347427 eV Core-core repulsion = 28337.097027 eV Total energy + Delta-G solvation = -4178.250401 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 366.186 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -41.79785 -40.92792 -39.19441 -38.55897 -37.72398 -36.22034 -34.80185 -34.59607 -33.10194 -32.94487 -31.47425 -29.79836 -27.80597 -26.83402 -26.19148 -25.39893 -24.45768 -23.65045 -23.34674 -22.95174 -21.60175 -21.24138 -19.58362 -18.93131 -18.05382 -17.67335 -17.52528 -17.37117 -16.91711 -16.75474 -16.46770 -16.35044 -16.07938 -16.02360 -15.91994 -15.56727 -15.47431 -15.32188 -14.71500 -14.58313 -14.08318 -13.99503 -13.71117 -13.67021 -13.46820 -13.24717 -13.08890 -12.98232 -12.77657 -12.63920 -12.53317 -12.47439 -12.35216 -12.24299 -12.24158 -12.18732 -12.08306 -11.98575 -11.70373 -11.45381 -11.15175 -10.84121 -10.56733 -10.42254 -9.98739 -9.89086 -9.51239 -9.37555 -0.09995 0.14386 0.31772 1.01130 1.15644 1.41057 1.49032 1.70894 1.71776 1.88583 1.91713 2.24045 2.65095 2.78746 2.99448 3.01431 3.25517 3.48587 3.61307 3.61648 3.70352 3.76324 3.78093 3.84202 3.95717 3.96885 4.07102 4.09745 4.12052 4.20474 4.25291 4.28244 4.31127 4.38971 4.50015 4.56965 4.62507 4.64761 4.66884 4.71727 4.72931 4.76138 4.83893 4.92076 4.93664 5.02395 5.07680 5.12636 5.15892 5.19118 5.30623 5.33005 5.46704 5.49904 5.79463 5.86750 5.89934 6.05180 6.12477 6.52294 6.70362 6.84723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.200 4.200 3 C 0.003 3.997 4 C -0.113 4.113 5 C -0.117 4.117 6 C -0.069 4.069 7 O -0.548 6.548 8 Si 0.969 3.031 9 H -0.261 1.261 10 H -0.271 1.271 11 H -0.257 1.257 12 C -0.059 4.059 13 C -0.074 4.074 14 C 0.097 3.903 15 N -0.533 5.533 16 C 0.042 3.958 17 C 0.114 3.886 18 N -0.597 5.597 19 C 0.630 3.370 20 O -0.552 6.552 21 C -0.265 4.265 22 C -0.031 4.031 23 C -0.090 4.090 24 C -0.155 4.155 25 C -0.146 4.146 26 C 0.150 3.850 27 H 0.093 0.907 28 C -0.132 4.132 29 C 0.051 3.949 30 C -0.088 4.088 31 H 0.255 0.745 32 H 0.124 0.876 33 H 0.131 0.869 34 H 0.389 0.611 35 H 0.142 0.858 36 H 0.105 0.895 37 H 0.050 0.950 38 H 0.100 0.900 39 H 0.036 0.964 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.151 0.849 43 H 0.094 0.906 44 H 0.126 0.874 45 H 0.128 0.872 46 H 0.100 0.900 47 H 0.049 0.951 48 H 0.073 0.927 49 H 0.054 0.946 50 H 0.035 0.965 51 H 0.113 0.887 52 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.338 1.272 2.721 6.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.200 4.200 3 C 0.003 3.997 4 C -0.131 4.131 5 C -0.117 4.117 6 C -0.181 4.181 7 O -0.355 6.355 8 Si 0.795 3.205 9 H -0.186 1.186 10 H -0.196 1.196 11 H -0.181 1.181 12 C -0.077 4.077 13 C -0.074 4.074 14 C -0.029 4.029 15 N -0.258 5.258 16 C -0.087 4.087 17 C -0.008 4.008 18 N -0.329 5.329 19 C 0.420 3.580 20 O -0.433 6.433 21 C -0.268 4.268 22 C -0.033 4.033 23 C -0.107 4.107 24 C -0.191 4.191 25 C -0.183 4.183 26 C 0.048 3.952 27 H 0.111 0.889 28 C -0.190 4.190 29 C -0.077 4.077 30 C -0.107 4.107 31 H 0.271 0.729 32 H 0.141 0.859 33 H 0.148 0.852 34 H 0.238 0.762 35 H 0.160 0.840 36 H 0.123 0.877 37 H 0.069 0.931 38 H 0.118 0.882 39 H 0.054 0.946 40 H 0.106 0.894 41 H 0.109 0.891 42 H 0.169 0.831 43 H 0.112 0.888 44 H 0.145 0.855 45 H 0.146 0.854 46 H 0.119 0.881 47 H 0.068 0.932 48 H 0.091 0.909 49 H 0.073 0.927 50 H 0.053 0.947 51 H 0.131 0.869 52 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -4.725 0.649 3.443 5.883 hybrid contribution -0.770 0.550 -1.210 1.536 sum -5.495 1.199 2.234 6.052 Atomic orbital electron populations 1.25803 0.96657 0.97290 0.97111 1.20444 0.92787 1.03325 1.03442 1.15919 0.86851 1.03044 0.93898 1.21197 0.94021 1.00507 0.97370 1.20256 0.92724 1.01837 0.96892 1.24863 1.02695 0.90828 0.99666 1.86498 1.37364 1.15318 1.96313 0.85404 0.77132 0.80923 0.77071 1.18583 1.19646 1.18119 1.21110 1.00945 0.95358 0.90285 1.19691 0.92604 0.99698 0.95456 1.21065 1.00763 0.88183 0.92919 1.61929 1.12009 1.11747 1.40077 1.22537 0.92199 0.92925 1.01010 1.21945 0.90592 0.96421 0.91840 1.48143 1.19116 1.39432 1.26229 1.14958 0.82530 0.78916 0.81587 1.90908 1.43751 1.69393 1.39225 1.20912 0.96828 1.02378 1.06690 1.22239 0.93017 0.93025 0.95034 1.19265 0.82987 0.97985 1.10497 1.23216 0.96105 1.02736 0.97090 1.23238 0.97199 1.04569 0.93281 1.21542 0.83617 0.90219 0.99868 0.88925 1.22051 0.99017 1.02072 0.95842 1.22574 0.97803 0.95413 0.91935 1.21218 0.93791 0.98718 0.96963 0.72859 0.85883 0.85175 0.76211 0.84018 0.87710 0.93140 0.88232 0.94620 0.89449 0.89127 0.83118 0.88794 0.85538 0.85368 0.88130 0.93193 0.90879 0.92683 0.94684 0.86921 0.85117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.13 19.25 74.32 1.43 1.56 16 2 C -0.20 -0.64 13.24 30.02 0.40 -0.24 16 3 C 0.00 0.01 5.72 -21.41 -0.12 -0.12 16 4 C -0.11 -0.16 8.37 22.52 0.19 0.03 16 5 C -0.12 0.10 5.35 -19.90 -0.11 -0.01 16 6 C -0.07 0.17 2.80 71.24 0.20 0.37 16 7 O -0.55 0.83 12.83 -148.98 -1.91 -1.08 16 8 Si 0.97 -0.99 25.13 68.60 1.72 0.73 16 9 H -0.26 -0.22 7.11 99.48 0.71 0.49 16 10 H -0.27 -0.58 7.11 99.48 0.71 0.13 16 11 H -0.26 0.09 7.04 99.48 0.70 0.79 16 12 C -0.06 0.10 9.33 22.32 0.21 0.31 16 13 C -0.07 0.15 4.89 -19.90 -0.10 0.06 16 14 C 0.10 -0.41 5.12 85.56 0.44 0.03 16 15 N -0.53 1.32 4.62 -899.82 -4.16 -2.83 16 16 C 0.04 -0.08 5.35 86.38 0.46 0.38 16 17 C 0.11 -0.03 6.46 86.35 0.56 0.53 16 18 N -0.60 -2.70 3.01 -802.98 -2.42 -5.12 16 19 C 0.63 6.75 7.45 85.49 0.64 7.38 16 20 O -0.55 -9.27 12.58 -4.07 -0.05 -9.32 16 21 C -0.27 -2.33 11.65 29.96 0.35 -1.98 16 22 C -0.03 -0.15 13.47 31.07 0.42 0.27 16 23 C -0.09 0.19 6.22 -12.60 -0.08 0.11 16 24 C -0.15 0.76 10.21 30.59 0.31 1.07 16 25 C -0.15 0.89 10.21 30.60 0.31 1.20 16 26 C 0.15 0.29 3.64 44.96 0.16 0.45 16 27 H 0.09 0.07 8.14 -2.39 -0.02 0.05 16 28 C -0.13 -0.67 7.62 71.98 0.55 -0.12 16 29 C 0.05 -0.10 4.92 86.38 0.43 0.32 16 30 C -0.09 0.03 7.58 22.52 0.17 0.20 16 31 H 0.26 -2.28 7.80 -4.42 -0.03 -2.31 16 32 H 0.12 0.09 4.86 -2.91 -0.01 0.07 16 33 H 0.13 -0.57 7.96 -2.39 -0.02 -0.59 16 34 H 0.39 -2.90 8.70 -74.06 -0.64 -3.54 16 35 H 0.14 -0.49 8.06 -2.91 -0.02 -0.51 16 36 H 0.10 -0.67 7.91 -2.39 -0.02 -0.69 16 37 H 0.05 -0.21 8.06 -2.39 -0.02 -0.23 16 38 H 0.10 -0.27 5.68 -2.39 -0.01 -0.28 16 39 H 0.04 -0.02 8.14 -2.39 -0.02 -0.04 16 40 H 0.09 -0.09 8.14 -2.39 -0.02 -0.11 16 41 H 0.09 -0.07 6.47 -2.39 -0.02 -0.09 16 42 H 0.15 -0.75 8.14 -2.39 -0.02 -0.77 16 43 H 0.09 -0.32 8.14 -2.39 -0.02 -0.34 16 44 H 0.13 -1.02 8.14 -2.39 -0.02 -1.04 16 45 H 0.13 -1.21 8.14 -2.39 -0.02 -1.23 16 46 H 0.10 -0.59 8.14 -2.39 -0.02 -0.61 16 47 H 0.05 0.48 6.78 -2.38 -0.02 0.47 16 48 H 0.07 0.02 8.14 -2.39 -0.02 0.01 16 49 H 0.05 0.55 6.77 -2.39 -0.02 0.53 16 50 H 0.03 0.01 8.14 -2.39 -0.02 -0.01 16 51 H 0.11 -0.63 7.99 -2.39 -0.02 -0.65 16 52 H 0.13 -0.27 7.94 -2.91 -0.02 -0.29 16 Total: 0.00 -17.67 424.66 1.05 -16.62 By element: Atomic # 1 Polarization: -11.85 SS G_CDS: 1.04 Total: -10.80 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: 6.82 Total: 11.81 kcal Atomic # 7 Polarization: -1.38 SS G_CDS: -6.57 Total: -7.95 kcal Atomic # 8 Polarization: -8.45 SS G_CDS: -1.96 Total: -10.41 kcal Atomic # 14 Polarization: -0.99 SS G_CDS: 1.72 Total: 0.73 kcal Total: -17.67 1.05 -16.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_275030_16591390_12659064_16591380.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.221 kcal (2) G-P(sol) polarization free energy of solvation -17.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds