Wall clock time and date at job start Sat Mar 6 2021 15:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39514 * 120.14567 * 82.09330 * 3 2 1 5 5 C 1.37993 * 119.85878 * 180.26863 * 4 3 2 6 6 C 1.50697 * 119.93056 * 179.73570 * 5 4 3 7 7 O 1.42906 * 109.46831 * 244.72860 * 6 5 4 8 8 Si 1.86300 * 109.47007 * 4.72249 * 6 5 4 9 9 H 1.48503 * 109.46942 * 60.00611 * 8 6 5 10 10 H 1.48503 * 109.47276 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47372 * 300.00074 * 8 6 5 12 12 C 1.38319 * 120.13819 * 359.45591 * 5 4 3 13 13 C 1.38363 * 120.28876 * 0.25446 * 12 5 4 14 14 C 1.50703 * 119.92877 * 179.97438 * 13 12 5 15 15 N 1.46902 * 109.46685 * 90.00350 * 14 13 12 16 16 H 1.00904 * 109.39929 * 55.18021 * 15 14 13 17 17 C 1.46833 * 109.39876 * 295.45043 * 15 14 13 18 18 C 1.53225 * 109.43515 * 175.41346 * 17 15 14 19 19 N 1.47105 * 108.48099 * 54.58988 * 18 17 15 20 20 C 1.34778 * 120.94139 * 129.56789 * 19 18 17 21 21 O 1.21618 * 120.00049 * 180.02562 * 20 19 18 22 22 C 1.43196 * 120.00083 * 0.02562 * 20 19 18 23 23 C 9.24040 * 138.69919 * 13.08280 * 3 1 2 24 24 C 9.77178 * 125.90987 * 305.46164 * 4 1 2 25 25 C 1.53000 * 117.49753 * 284.20002 * 24 23 22 26 26 C 1.52993 * 117.49912 * 215.53979 * 24 23 22 27 27 C 1.47106 * 118.11606 * 309.58793 * 19 18 17 28 28 H 1.09004 * 109.63694 * 170.11395 * 27 19 18 29 29 C 1.53006 * 109.80293 * 290.61685 * 27 19 18 30 30 C 1.46836 * 109.39835 * 174.99995 * 15 14 13 31 31 C 1.37948 * 120.14494 * 0.02562 * 13 12 5 32 32 H 4.52055 * 14.01862 * 0.02562 * 4 2 1 33 33 H 1.08003 * 120.06956 * 0.02562 * 4 3 2 34 34 H 1.09000 * 109.47374 * 124.72433 * 6 5 4 35 35 H 0.96693 * 114.00047 * 60.00191 * 7 6 5 36 36 H 1.08003 * 119.85182 * 180.27104 * 12 5 4 37 37 H 1.08997 * 109.47522 * 209.99944 * 14 13 12 38 38 H 1.09001 * 109.47490 * 330.00433 * 14 13 12 39 39 H 1.09007 * 109.47692 * 295.39821 * 17 15 14 40 40 H 1.09000 * 109.47930 * 55.41948 * 17 15 14 41 41 H 1.09007 * 109.63263 * 294.89266 * 18 17 15 42 42 H 1.09001 * 109.80703 * 174.38754 * 18 17 15 43 43 H 1.09000 * 115.54946 * 69.86407 * 24 23 22 44 44 H 1.08996 * 117.50197 * 359.97438 * 25 24 23 45 45 H 1.08999 * 117.49917 * 145.02074 * 25 24 23 46 46 H 1.09001 * 117.49812 * 214.97757 * 26 24 23 47 47 H 1.09004 * 117.50100 * 359.97438 * 26 24 23 48 48 H 1.08997 * 109.47007 * 179.09153 * 29 27 19 49 49 H 1.08997 * 109.47312 * 299.08957 * 29 27 19 50 50 H 1.08998 * 109.46844 * 59.09104 * 29 27 19 51 51 H 1.09001 * 109.47600 * 304.57881 * 30 15 14 52 52 H 1.08998 * 109.47791 * 64.60027 * 30 15 14 53 53 H 1.07998 * 120.07555 * 179.97438 * 31 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3068 -0.1650 -1.1950 5 6 4.6867 -0.1690 -1.1874 6 6 5.4452 -0.3538 -2.4764 7 8 6.1775 -1.5799 -2.4265 8 14 4.2456 -0.4044 -3.9009 9 1 3.4846 0.8697 -3.9527 10 1 4.9930 -0.5871 -5.1711 11 1 3.3032 -1.5368 -3.7145 12 6 5.3751 0.0020 0.0001 13 6 4.6862 0.1728 1.1878 14 6 5.4445 0.3579 2.4769 15 7 5.6910 1.7890 2.6988 16 1 4.8142 2.2878 2.6745 17 6 6.5713 2.3019 1.6414 18 6 6.7367 3.8163 1.8057 19 7 7.2073 4.0883 3.1726 20 6 8.2784 4.8763 3.3928 21 8 8.6531 5.0894 4.5300 22 6 8.9753 5.4626 2.2877 23 6 9.5494 -5.9381 -1.3805 24 6 10.2646 6.5422 0.2506 25 6 9.0002 7.3626 -0.0123 26 6 10.1713 7.4241 -0.9961 27 6 6.4761 3.4756 4.2924 28 1 7.0350 3.6193 5.2172 29 6 5.0936 4.1183 4.4222 30 6 6.3230 1.9774 4.0107 31 6 3.3067 0.1730 1.1946 32 1 -1.0499 0.0005 -0.0002 33 1 2.7703 -0.2938 -2.1235 34 1 6.1369 0.4774 -2.6133 35 1 5.6243 -2.3638 -2.3061 36 1 6.4551 0.0025 0.0001 37 1 4.8581 -0.0422 3.3041 38 1 6.3963 -0.1699 2.4176 39 1 7.5462 1.8197 1.7144 40 1 6.1319 2.0878 0.6671 41 1 5.7781 4.3092 1.6434 42 1 7.4662 4.1883 1.0863 43 1 10.9220 6.8744 1.0541 44 1 8.1066 6.8234 -0.3267 45 1 8.8260 8.2348 0.6178 46 1 10.7671 8.3367 -1.0127 47 1 10.0485 6.9252 -1.9575 48 1 4.5507 3.6495 5.2428 49 1 5.2056 5.1838 4.6226 50 1 4.5398 3.9794 3.4938 51 1 5.7006 1.5242 4.7823 52 1 7.3053 1.5051 4.0121 53 1 2.7701 0.3060 2.1224 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_275030_16591390_12659064_16591380.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 15:48:01 Heat of formation + Delta-G solvation = 677.117235 kcal Electronic energy + Delta-G solvation = -32417.169872 eV Core-core repulsion = 28249.396118 eV Total energy + Delta-G solvation = -4167.773754 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 367.193 amu Computer time = 2.74 seconds Orbital eigenvalues (eV) -43.10939 -40.75765 -38.99764 -37.66135 -36.22628 -35.22563 -34.82840 -33.88086 -33.25104 -31.49916 -30.07440 -28.26408 -26.91520 -26.50615 -25.67947 -24.83791 -24.31747 -23.79218 -22.43031 -22.17073 -21.39188 -20.20860 -19.80345 -19.59275 -18.22830 -18.03415 -17.65696 -17.40244 -17.18778 -16.69687 -16.64353 -16.14961 -15.92915 -15.72740 -15.48514 -15.40346 -15.36613 -14.73730 -14.68398 -14.37359 -14.11374 -13.97577 -13.58165 -13.47911 -13.36225 -13.30919 -13.00806 -12.89122 -12.73967 -12.70856 -12.58970 -12.33649 -12.23065 -12.13488 -12.03587 -11.92358 -11.73401 -11.51180 -11.37300 -10.45260 -10.26826 -10.08548 -9.58975 -9.40772 -9.40015 -7.98407 -6.34470 -6.02645 -3.10172 -3.09780 -3.09343 -0.27446 -0.02954 0.91450 1.20558 1.35567 1.49533 1.59281 1.66194 1.88038 2.03468 2.58672 2.70309 2.77070 2.89537 2.98067 3.17693 3.21936 3.31667 3.45525 3.53409 3.67324 3.77676 3.87833 3.96255 4.04108 4.06324 4.09037 4.14583 4.25028 4.30920 4.33724 4.36451 4.44699 4.53238 4.57158 4.67028 4.71204 4.75791 4.77276 4.84267 4.88403 4.89007 5.07320 5.07551 5.19205 5.22351 5.25603 5.32454 5.32797 5.74305 5.81294 5.85407 6.19056 6.33952 6.40795 6.48182 6.84849 6.96229 7.30056 8.46214 Molecular weight = 367.19amu Principal moments of inertia in cm(-1) A = 0.005942 B = 0.002698 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4710.934362 B =10376.347594 C =11629.883805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.199 4.199 3 C -0.003 4.003 4 C -0.099 4.099 5 C -0.114 4.114 6 C -0.029 4.029 7 O -0.522 6.522 8 Si 0.926 3.074 9 H -0.304 1.304 10 H -0.273 1.273 11 H -0.249 1.249 12 C -0.041 4.041 13 C -0.126 4.126 14 C 0.050 3.950 15 N -0.373 5.373 16 H 0.423 0.577 17 C 0.011 3.989 18 C 0.090 3.910 19 N -0.658 5.658 20 C 0.238 3.762 21 O -0.760 6.760 22 C -0.322 4.322 23 C 2.000 2.000 24 C -0.522 4.522 25 C -0.181 4.181 26 C -0.264 4.264 27 C 0.099 3.901 28 H 0.057 0.943 29 C -0.167 4.167 30 C 0.026 3.974 31 C -0.063 4.063 32 H 0.239 0.761 33 H 0.108 0.892 34 H 0.139 0.861 35 H 0.393 0.607 36 H 0.186 0.814 37 H 0.174 0.826 38 H 0.183 0.817 39 H 0.154 0.846 40 H 0.168 0.832 41 H 0.058 0.942 42 H 0.075 0.925 43 H -0.097 1.097 44 H 0.060 0.940 45 H -0.040 1.040 46 H -0.029 1.029 47 H 0.074 0.926 48 H 0.110 0.890 49 H 0.002 0.998 50 H 0.080 0.920 51 H 0.188 0.812 52 H 0.141 0.859 53 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.191 -120.401 -21.830 122.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.199 4.199 3 C -0.003 4.003 4 C -0.117 4.117 5 C -0.114 4.114 6 C -0.144 4.144 7 O -0.329 6.329 8 Si 0.758 3.242 9 H -0.231 1.231 10 H -0.199 1.199 11 H -0.173 1.173 12 C -0.059 4.059 13 C -0.127 4.127 14 C -0.068 4.068 15 N 0.048 4.952 16 H 0.260 0.740 17 C -0.112 4.112 18 C -0.034 4.034 19 N -0.395 5.395 20 C 0.076 3.924 21 O -0.672 6.672 22 C -0.334 4.334 23 C 2.000 2.000 24 C -0.540 4.540 25 C -0.217 4.217 26 C -0.300 4.300 27 C -0.005 4.005 28 H 0.075 0.925 29 C -0.226 4.226 30 C -0.097 4.097 31 C -0.081 4.081 32 H 0.256 0.744 33 H 0.126 0.874 34 H 0.156 0.844 35 H 0.243 0.757 36 H 0.204 0.796 37 H 0.191 0.809 38 H 0.201 0.799 39 H 0.172 0.828 40 H 0.185 0.815 41 H 0.076 0.924 42 H 0.093 0.907 43 H -0.078 1.078 44 H 0.078 0.922 45 H -0.021 1.021 46 H -0.011 1.011 47 H 0.092 0.908 48 H 0.129 0.871 49 H 0.021 0.979 50 H 0.099 0.901 51 H 0.205 0.795 52 H 0.159 0.841 53 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 0.100 -120.037 -22.052 122.045 hybrid contribution -1.909 3.353 1.473 4.130 sum -1.809 -116.683 -20.579 118.498 Atomic orbital electron populations 1.25807 0.97112 0.97830 0.97589 1.20660 0.93342 1.02846 1.03009 1.15990 0.85887 1.03549 0.94891 1.21382 0.95265 0.98120 0.96916 1.20170 0.91566 1.02162 0.97537 1.24099 1.01214 0.92138 0.96924 1.86375 1.36006 1.14732 1.95738 0.86041 0.78422 0.79965 0.79799 1.23102 1.19864 1.17306 1.21524 1.02549 0.92833 0.89018 1.19518 0.92141 1.06001 0.95033 1.23028 1.08213 0.76846 0.98715 1.45493 1.17926 1.17586 1.14183 0.73961 1.24121 0.99589 0.93939 0.93576 1.21829 1.00385 0.96053 0.85148 1.48385 1.31496 1.54754 1.04880 1.23348 0.86544 0.88606 0.93910 1.90416 1.75163 1.75647 1.25995 1.85995 0.76452 1.14649 0.56263 1.99999 0.00001 0.00001 0.00000 1.45703 0.82075 1.45537 0.80717 1.21414 0.94515 1.00636 1.05161 1.22519 1.07437 1.01012 0.99057 1.21338 0.93004 0.92895 0.93271 0.92504 1.22290 0.96303 1.00223 1.03767 1.23992 1.05443 0.95718 0.84531 1.21474 0.94238 0.95119 0.97309 0.74407 0.87410 0.84357 0.75706 0.79643 0.80853 0.79918 0.82782 0.81474 0.92393 0.90715 1.07834 0.92162 1.02143 1.01126 0.90824 0.87147 0.97869 0.90136 0.79522 0.84087 0.83226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 3.89 19.25 74.32 1.43 5.32 16 2 C -0.20 4.82 13.24 30.01 0.40 5.22 16 3 C 0.00 0.10 5.72 -21.41 -0.12 -0.02 16 4 C -0.10 3.38 8.37 22.52 0.19 3.57 16 5 C -0.11 4.91 5.35 -19.90 -0.11 4.80 16 6 C -0.03 1.27 2.80 71.23 0.20 1.47 16 7 O -0.52 29.23 12.83 -148.98 -1.91 27.31 16 8 Si 0.93 -29.84 25.13 68.60 1.72 -28.12 16 9 H -0.30 6.36 7.11 99.48 0.71 7.07 16 10 H -0.27 7.64 7.11 99.48 0.71 8.34 16 11 H -0.25 8.35 7.05 99.48 0.70 9.05 16 12 C -0.04 2.09 7.39 22.32 0.16 2.25 16 13 C -0.13 6.36 4.71 -19.90 -0.09 6.27 16 14 C 0.05 -2.82 4.81 85.56 0.41 -2.41 16 15 N -0.37 16.00 0.38 -900.22 -0.35 15.65 16 16 H 0.42 -18.11 6.41 -89.69 -0.57 -18.69 16 17 C 0.01 -0.35 4.85 86.39 0.42 0.07 16 18 C 0.09 -0.32 6.01 86.34 0.52 0.20 16 19 N -0.66 -7.28 2.72 -802.88 -2.18 -9.46 16 20 C 0.24 9.24 7.56 85.49 0.65 9.88 16 21 O -0.76 -38.19 16.55 -4.09 -0.07 -38.26 16 22 C -0.32 -16.05 18.53 69.07 1.28 -14.77 16 23 C 2.00 -350.79 36.32 113.37 4.12 -346.68 16 24 C -0.52 -31.42 12.26 30.59 0.37 -31.05 16 25 C -0.18 -9.91 9.42 30.62 0.29 -9.62 16 26 C -0.26 -13.93 10.53 30.62 0.32 -13.60 16 27 C 0.10 -0.53 3.21 44.95 0.14 -0.39 16 28 H 0.06 0.47 7.07 -2.38 -0.02 0.45 16 29 C -0.17 1.51 9.10 71.98 0.66 2.17 16 30 C 0.03 -0.86 4.76 86.39 0.41 -0.45 16 31 C -0.06 2.63 9.40 22.52 0.21 2.84 16 32 H 0.24 -6.62 7.80 -4.42 -0.03 -6.65 16 33 H 0.11 -3.27 4.86 -2.91 -0.01 -3.28 16 34 H 0.14 -5.92 7.96 -2.39 -0.02 -5.94 16 35 H 0.39 -25.75 8.70 -74.06 -0.64 -26.39 16 36 H 0.19 -10.79 7.89 -2.91 -0.02 -10.81 16 37 H 0.17 -10.82 7.96 -2.39 -0.02 -10.83 16 38 H 0.18 -11.89 8.05 -2.39 -0.02 -11.91 16 39 H 0.15 -5.49 8.06 -2.38 -0.02 -5.51 16 40 H 0.17 -6.78 5.58 -2.39 -0.01 -6.79 16 41 H 0.06 -0.32 7.67 -2.38 -0.02 -0.33 16 42 H 0.07 0.81 6.44 -2.39 -0.02 0.79 16 43 H -0.10 -6.93 8.10 -2.39 -0.02 -6.95 16 44 H 0.06 2.82 8.14 -2.39 -0.02 2.81 16 45 H -0.04 -2.37 8.14 -2.39 -0.02 -2.39 16 46 H -0.03 -1.61 8.14 -2.39 -0.02 -1.63 16 47 H 0.07 3.21 8.14 -2.39 -0.02 3.20 16 48 H 0.11 -2.07 8.14 -2.39 -0.02 -2.09 16 49 H 0.00 0.01 8.14 -2.39 -0.02 0.00 16 50 H 0.08 -1.43 6.00 -2.39 -0.01 -1.45 16 51 H 0.19 -8.45 8.03 -2.39 -0.02 -8.46 16 52 H 0.14 -4.94 8.06 -2.39 -0.02 -4.96 16 53 H 0.15 -6.57 8.06 -2.91 -0.02 -6.59 16 Total: 1.00 -527.31 464.00 9.55 -517.76 By element: Atomic # 1 Polarization: -110.42 SS G_CDS: 0.47 Total: -109.95 kcal Atomic # 6 Polarization: -386.80 SS G_CDS: 11.86 Total: -374.94 kcal Atomic # 7 Polarization: 8.72 SS G_CDS: -2.53 Total: 6.19 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: -1.98 Total: -10.94 kcal Atomic # 14 Polarization: -29.84 SS G_CDS: 1.72 Total: -28.12 kcal Total: -527.31 9.55 -517.76 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_275030_16591390_12659064_16591380.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1194.876 kcal (2) G-P(sol) polarization free energy of solvation -527.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 667.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -517.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 677.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.75 seconds