Wall clock time and date at job start Sat Mar 6 2021 03:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39600 * 120.48943 * 64.96545 * 3 2 1 5 5 N 1.31780 * 120.88225 * 179.97438 * 4 3 2 6 6 C 1.31706 * 122.03912 * 359.77150 * 5 4 3 7 7 C 1.39646 * 120.87535 * 0.49396 * 6 5 4 8 8 C 1.47863 * 120.48940 * 179.77064 * 7 6 5 9 9 O 1.21547 * 119.99726 * 147.74174 * 8 7 6 10 10 N 1.34779 * 120.00035 * 327.74606 * 8 7 6 11 11 C 1.47080 * 120.87880 * 354.11183 * 10 8 7 12 12 C 1.53244 * 108.52175 * 231.20585 * 11 10 8 13 13 N 1.46900 * 109.33694 * 306.17543 * 12 11 10 14 14 C 1.46905 * 110.99507 * 187.25024 * 13 12 11 15 15 C 1.50700 * 109.47014 * 66.04970 * 14 13 12 16 16 C 1.37943 * 119.93349 * 89.99790 * 15 14 13 17 17 C 1.39556 * 119.86050 * 180.02562 * 16 15 14 18 18 C 1.43197 * 120.14692 * 179.97438 * 17 16 15 19 19 C 8.80336 * 144.35683 * 312.09818 * 10 1 2 20 20 C 1.39515 * 119.71455 * 359.97438 * 17 16 15 21 21 C 1.38003 * 119.85773 * 0.02562 * 20 17 16 22 22 C 1.50692 * 119.92896 * 179.97438 * 21 20 17 23 23 O 1.42902 * 109.47051 * 119.99850 * 22 21 20 24 24 Si 1.86303 * 109.47347 * 359.97438 * 22 21 20 25 25 H 1.48499 * 109.47092 * 179.97438 * 24 22 21 26 26 H 1.48498 * 109.46920 * 60.00279 * 24 22 21 27 27 H 1.48499 * 109.47291 * 300.00056 * 24 22 21 28 28 C 1.38326 * 120.13693 * 0.26768 * 21 20 17 29 29 C 1.46894 * 111.27201 * 63.10531 * 13 12 11 30 30 C 1.47077 * 120.88017 * 174.13862 * 10 8 7 31 31 H 1.08999 * 109.62625 * 248.69738 * 30 10 8 32 32 C 1.52997 * 109.62897 * 9.07784 * 30 10 8 33 33 C 1.39714 * 120.48782 * 244.98305 * 3 2 1 34 34 H 4.52707 * 13.92809 * 359.97438 * 4 2 1 35 35 H 1.07998 * 119.55835 * 0.02562 * 4 3 2 36 36 H 1.07997 * 119.56180 * 180.26737 * 6 5 4 37 37 H 1.09003 * 109.62621 * 111.50276 * 11 10 8 38 38 H 1.08991 * 109.63112 * 350.92091 * 11 10 8 39 39 H 1.08994 * 109.49036 * 186.21417 * 12 11 10 40 40 H 1.09001 * 109.48867 * 66.13214 * 12 11 10 41 41 H 1.08997 * 109.47320 * 306.04415 * 14 13 12 42 42 H 1.08996 * 109.46946 * 186.04697 * 14 13 12 43 43 H 1.08004 * 120.07240 * 359.97438 * 16 15 14 44 44 H 9.66554 * 146.56670 * 317.38714 * 10 1 2 45 45 H 1.08008 * 120.07410 * 180.02562 * 20 17 16 46 46 H 1.08997 * 109.46955 * 239.99838 * 22 21 20 47 47 H 0.96700 * 113.99765 * 299.99673 * 23 22 21 48 48 H 1.07998 * 119.85291 * 179.72897 * 28 21 20 49 49 H 1.08999 * 109.49919 * 56.85108 * 29 13 12 50 50 H 1.09004 * 109.49516 * 176.93201 * 29 13 12 51 51 H 1.09000 * 109.46920 * 54.10486 * 32 30 10 52 52 H 1.09005 * 109.47042 * 174.09781 * 32 30 10 53 53 H 1.08994 * 109.47404 * 294.09764 * 32 30 10 54 54 H 1.08001 * 120.91759 * 0.02562 * 33 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3146 -0.5081 -1.0899 5 7 4.6323 -0.5109 -1.0983 6 6 5.3384 -0.0356 -0.0933 7 6 4.7110 0.4872 1.0394 8 6 5.5121 1.0139 2.1651 9 8 5.0907 1.9400 2.8300 10 7 6.7097 0.4671 2.4538 11 6 7.1814 -0.7335 1.7471 12 6 7.6176 -1.7708 2.7874 13 7 8.5949 -1.1629 3.7003 14 6 9.1665 -2.1691 4.6053 15 6 9.9835 -3.1541 3.8095 16 6 11.3258 -2.9200 3.5944 17 6 12.0808 -3.8330 2.8567 18 6 13.4746 -3.5958 2.6292 19 6 14.6142 -3.4082 2.4513 20 6 11.4719 -4.9778 2.3420 21 6 10.1282 -5.2003 2.5643 22 6 9.4687 -6.4361 2.0085 23 8 8.9311 -7.2124 3.0811 24 14 10.7276 -7.4474 1.0793 25 1 10.0778 -8.6654 0.5322 26 1 11.8227 -7.8428 2.0010 27 1 11.2857 -6.6404 -0.0353 28 6 9.3842 -4.2884 3.2911 29 6 7.9997 -0.0528 4.4560 30 6 7.5792 1.0549 3.4841 31 1 8.4621 1.4884 3.0144 32 6 6.8149 2.1416 4.2428 33 6 3.3146 0.5101 1.0910 34 1 -1.0500 -0.0006 -0.0002 35 1 2.7755 -0.9039 -1.9380 36 1 6.4171 -0.0539 -0.1442 37 1 8.0278 -0.4749 1.1108 38 1 6.3740 -1.1416 1.1394 39 1 8.0723 -2.6230 2.2827 40 1 6.7487 -2.1045 3.3546 41 1 8.3616 -2.6953 5.1185 42 1 9.8046 -1.6769 5.3392 43 1 11.7913 -2.0317 3.9951 44 1 15.6364 -3.2354 2.2844 45 1 12.0508 -5.6884 1.7706 46 1 8.6651 -6.1458 1.3318 47 1 9.5915 -7.5059 3.7237 48 1 8.3320 -4.4650 3.4586 49 1 7.1255 -0.4104 5.0000 50 1 8.7316 0.3408 5.1614 51 1 5.8832 1.7282 4.6290 52 1 7.4236 2.5023 5.0721 53 1 6.5935 2.9685 3.5681 54 1 2.7976 0.9105 1.9505 RHF calculation, no. of doubly occupied orbitals= 74 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_275030_16591390_14127244_16591380.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 03:59:19 Heat of formation + Delta-G solvation = 146.500520 kcal Electronic energy + Delta-G solvation = -37576.982537 eV Core-core repulsion = 32949.750922 eV Total energy + Delta-G solvation = -4627.231614 eV No. of doubly occupied orbitals = 74 Molecular weight (most abundant/longest-lived isotopes) = 403.181 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -42.28739 -41.11513 -40.65928 -39.09475 -37.73607 -36.32283 -35.50033 -34.79721 -34.50450 -33.02199 -32.98500 -31.54394 -31.40216 -29.75225 -27.72274 -26.86435 -26.19393 -25.60207 -25.23178 -24.13163 -23.47791 -22.74894 -21.48318 -21.02990 -19.61033 -19.56849 -18.36520 -18.15055 -18.04197 -17.64226 -17.41829 -17.02882 -16.87294 -16.69115 -16.50855 -16.34564 -16.02263 -15.95003 -15.69956 -15.56632 -15.33088 -15.11744 -15.05923 -14.68671 -14.40819 -14.33948 -14.09154 -13.98665 -13.69321 -13.54147 -13.45095 -13.19983 -12.97376 -12.78425 -12.71331 -12.63241 -12.33885 -12.30056 -12.19715 -12.15922 -12.08121 -11.93698 -11.85398 -11.73229 -11.47352 -11.05395 -10.94761 -10.44980 -10.27241 -9.93677 -9.87470 -9.86090 -9.52739 -9.31954 -0.64931 -0.26616 -0.10590 0.18935 1.15456 1.41425 1.44644 1.48714 1.56515 1.74155 1.76207 1.88322 1.92244 1.99041 2.69871 2.76655 2.98188 3.05113 3.21052 3.27508 3.36509 3.48755 3.55028 3.61498 3.61895 3.72567 3.74706 3.82556 3.95154 4.01167 4.09290 4.12443 4.17665 4.23917 4.25192 4.27144 4.31549 4.37227 4.52289 4.57703 4.64578 4.65950 4.67315 4.69503 4.75948 4.78953 4.80455 4.87500 4.93779 4.96543 5.11244 5.11895 5.23851 5.32789 5.33722 5.34684 5.48346 5.52292 5.81744 5.88928 5.94316 6.19408 6.43073 6.54454 6.61856 6.68421 6.92300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.208 4.208 3 C -0.045 4.045 4 C 0.145 3.855 5 N -0.491 5.491 6 C 0.136 3.864 7 C -0.191 4.191 8 C 0.565 3.435 9 O -0.554 6.554 10 N -0.600 5.600 11 C 0.095 3.905 12 C 0.037 3.963 13 N -0.534 5.534 14 C 0.097 3.903 15 C -0.073 4.073 16 C -0.071 4.071 17 C 0.001 3.999 18 C -0.197 4.197 19 C -0.154 4.154 20 C -0.112 4.112 21 C -0.115 4.115 22 C -0.069 4.069 23 O -0.548 6.548 24 Si 0.967 3.033 25 H -0.272 1.272 26 H -0.259 1.259 27 H -0.260 1.260 28 C -0.075 4.075 29 C 0.051 3.949 30 C 0.150 3.850 31 H 0.091 0.909 32 C -0.131 4.131 33 C -0.009 4.009 34 H 0.261 0.739 35 H 0.186 0.814 36 H 0.192 0.808 37 H 0.099 0.901 38 H 0.104 0.896 39 H 0.103 0.897 40 H 0.036 0.964 41 H 0.053 0.947 42 H 0.098 0.902 43 H 0.135 0.865 44 H 0.253 0.747 45 H 0.122 0.878 46 H 0.133 0.867 47 H 0.389 0.611 48 H 0.138 0.862 49 H 0.034 0.966 50 H 0.106 0.894 51 H 0.050 0.950 52 H 0.066 0.934 53 H 0.055 0.945 54 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.358 -2.588 0.339 2.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.209 4.209 3 C -0.047 4.047 4 C -0.012 4.012 5 N -0.198 5.198 6 C -0.021 4.021 7 C -0.196 4.196 8 C 0.353 3.647 9 O -0.434 6.434 10 N -0.332 5.332 11 C -0.027 4.027 12 C -0.091 4.091 13 N -0.258 5.258 14 C -0.029 4.029 15 C -0.074 4.074 16 C -0.089 4.089 17 C 0.001 3.999 18 C -0.197 4.197 19 C -0.170 4.170 20 C -0.130 4.130 21 C -0.116 4.116 22 C -0.180 4.180 23 O -0.355 6.355 24 Si 0.793 3.207 25 H -0.197 1.197 26 H -0.183 1.183 27 H -0.185 1.185 28 C -0.094 4.094 29 C -0.078 4.078 30 C 0.048 3.952 31 H 0.109 0.891 32 C -0.188 4.188 33 C -0.036 4.036 34 H 0.277 0.723 35 H 0.203 0.797 36 H 0.208 0.792 37 H 0.117 0.883 38 H 0.122 0.878 39 H 0.121 0.879 40 H 0.055 0.945 41 H 0.071 0.929 42 H 0.117 0.883 43 H 0.153 0.847 44 H 0.269 0.731 45 H 0.140 0.860 46 H 0.151 0.849 47 H 0.238 0.762 48 H 0.156 0.844 49 H 0.052 0.948 50 H 0.124 0.876 51 H 0.069 0.931 52 H 0.084 0.916 53 H 0.074 0.926 54 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 2.044 -2.639 -1.065 3.504 hybrid contribution -0.778 0.264 1.641 1.835 sum 1.265 -2.375 0.576 2.752 Atomic orbital electron populations 1.25880 0.96554 0.95788 0.95701 1.19874 0.92030 1.04344 1.04611 1.16926 0.88786 1.02775 0.96179 1.23538 0.89598 0.91604 0.96467 1.67863 1.07997 1.16673 1.27307 1.23746 1.01853 0.89596 0.86902 1.20908 0.94553 1.06062 0.98053 1.18193 0.81012 0.82343 0.83117 1.90870 1.71026 1.30302 1.51195 1.48165 1.17065 1.29026 1.38974 1.22566 1.00981 0.84062 0.95086 1.22616 0.94089 0.97408 0.95032 1.61945 1.34023 1.09840 1.19998 1.21043 0.97345 0.91405 0.93143 1.19683 0.93424 0.95382 0.98876 1.21178 0.93375 0.97969 0.96389 1.15994 0.87786 0.95890 1.00261 1.20292 0.93376 1.03022 1.03033 1.25599 0.96784 0.97304 0.97342 1.21166 0.94728 0.97097 1.00028 1.20201 0.92975 0.98031 1.00379 1.24843 1.06368 0.92115 0.94668 1.86493 1.39076 1.71251 1.38722 0.85422 0.77136 0.78753 0.79388 1.19665 1.18296 1.18484 1.21119 1.00378 0.92318 0.95554 1.22554 0.98776 0.91273 0.95155 1.21476 0.92600 0.93333 0.87788 0.89066 1.22044 0.99168 0.97775 0.99857 1.21794 0.92519 0.91757 0.97482 0.72322 0.79676 0.79178 0.88302 0.87827 0.87909 0.94541 0.92868 0.88331 0.84746 0.73057 0.86015 0.84946 0.76194 0.84397 0.94757 0.87614 0.93085 0.91579 0.92591 0.83994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.18 19.25 74.32 1.43 1.62 16 2 C -0.21 -0.63 13.27 30.02 0.40 -0.23 16 3 C -0.04 -0.16 5.73 -21.35 -0.12 -0.28 16 4 C 0.14 0.24 10.90 85.03 0.93 1.17 16 5 N -0.49 -1.31 10.33 -193.75 -2.00 -3.31 16 6 C 0.14 0.08 8.57 85.05 0.73 0.81 16 7 C -0.19 -0.66 5.38 -20.02 -0.11 -0.77 16 8 C 0.56 3.08 7.35 86.79 0.64 3.72 16 9 O -0.55 -6.54 12.31 -3.86 -0.05 -6.59 16 10 N -0.60 -0.29 3.01 -797.46 -2.40 -2.69 16 11 C 0.10 -0.40 4.87 86.35 0.42 0.02 16 12 C 0.04 -0.16 5.33 86.38 0.46 0.30 16 13 N -0.53 2.03 4.62 -899.82 -4.16 -2.12 16 14 C 0.10 -0.47 5.12 85.56 0.44 -0.03 16 15 C -0.07 0.19 4.90 -19.90 -0.10 0.09 16 16 C -0.07 0.00 9.40 22.52 0.21 0.21 16 17 C 0.00 0.00 5.72 -21.41 -0.12 -0.12 16 18 C -0.20 -0.79 13.21 30.07 0.40 -0.39 16 19 C -0.15 -0.03 19.22 74.37 1.43 1.40 16 20 C -0.11 -0.15 8.37 22.52 0.19 0.04 16 21 C -0.12 0.17 5.38 -19.90 -0.11 0.07 16 22 C -0.07 0.22 2.82 71.23 0.20 0.42 16 23 O -0.55 1.14 12.77 -148.98 -1.90 -0.76 16 24 Si 0.97 -1.17 25.07 68.60 1.72 0.55 16 25 H -0.27 -0.53 7.11 99.48 0.71 0.17 16 26 H -0.26 0.03 7.11 99.48 0.71 0.73 16 27 H -0.26 -0.14 7.11 99.48 0.71 0.56 16 28 C -0.08 0.21 7.42 22.32 0.17 0.37 16 29 C 0.05 -0.16 4.91 86.38 0.42 0.26 16 30 C 0.15 -0.05 3.65 44.96 0.16 0.11 16 31 H 0.09 -0.11 8.14 -2.39 -0.02 -0.13 16 32 C -0.13 -0.42 7.61 71.98 0.55 0.13 16 33 C -0.01 -0.04 9.46 22.99 0.22 0.17 16 34 H 0.26 -2.58 7.80 -4.42 -0.03 -2.61 16 35 H 0.19 -0.57 8.06 -2.91 -0.02 -0.59 16 36 H 0.19 -0.82 5.69 -2.91 -0.02 -0.84 16 37 H 0.10 -0.61 7.96 -2.39 -0.02 -0.63 16 38 H 0.10 -0.53 4.50 -2.39 -0.01 -0.54 16 39 H 0.10 -0.54 5.64 -2.39 -0.01 -0.56 16 40 H 0.04 -0.10 8.14 -2.39 -0.02 -0.12 16 41 H 0.05 -0.27 8.07 -2.39 -0.02 -0.29 16 42 H 0.10 -0.62 7.90 -2.39 -0.02 -0.64 16 43 H 0.13 -0.21 8.06 -2.91 -0.02 -0.23 16 44 H 0.25 -1.97 7.80 -4.42 -0.03 -2.01 16 45 H 0.12 0.10 4.88 -2.91 -0.01 0.09 16 46 H 0.13 -0.75 7.96 -2.39 -0.02 -0.77 16 47 H 0.39 -3.02 8.70 -74.06 -0.64 -3.66 16 48 H 0.14 -0.63 7.90 -2.91 -0.02 -0.65 16 49 H 0.03 -0.03 8.14 -2.39 -0.02 -0.05 16 50 H 0.11 -0.62 7.99 -2.39 -0.02 -0.64 16 51 H 0.05 0.38 6.79 -2.39 -0.02 0.36 16 52 H 0.07 -0.03 8.14 -2.38 -0.02 -0.05 16 53 H 0.06 0.43 6.76 -2.39 -0.02 0.42 16 54 H 0.14 0.73 8.01 -2.91 -0.02 0.71 16 Total: 0.00 -18.87 440.33 1.10 -17.78 By element: Atomic # 1 Polarization: -13.01 SS G_CDS: 1.05 Total: -11.95 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: 8.83 Total: 9.10 kcal Atomic # 7 Polarization: 0.43 SS G_CDS: -8.56 Total: -8.12 kcal Atomic # 8 Polarization: -5.40 SS G_CDS: -1.95 Total: -7.35 kcal Atomic # 14 Polarization: -1.17 SS G_CDS: 1.72 Total: 0.55 kcal Total: -18.87 1.10 -17.78 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_275030_16591390_14127244_16591380.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.276 kcal (2) G-P(sol) polarization free energy of solvation -18.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 146.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds