Wall clock time and date at job start Sat Mar 6 2021 03:30:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86301 * 109.47302 * 2 1 4 4 C 1.50705 * 109.47128 * 240.00095 * 2 1 3 5 5 C 1.38709 * 120.02687 * 285.02154 * 4 2 1 6 6 O 1.35895 * 120.05826 * 0.02562 * 5 4 2 7 7 C 1.42904 * 117.00129 * 179.97438 * 6 5 4 8 8 C 1.50704 * 109.47033 * 179.97438 * 7 6 5 9 9 O 1.21278 * 120.00105 * 359.97438 * 8 7 6 10 10 N 1.34774 * 119.99611 * 179.97438 * 8 7 6 11 11 C 1.46501 * 119.99563 * 179.97438 * 10 8 7 12 12 H 1.08998 * 112.85274 * 336.20258 * 11 10 8 13 13 C 1.53789 * 113.61044 * 107.50691 * 11 10 8 14 14 C 1.53775 * 87.08254 * 89.11291 * 13 11 10 15 15 H 1.08998 * 113.61981 * 270.87959 * 14 13 11 16 16 C 1.50699 * 113.69047 * 139.99043 * 14 13 11 17 17 C 1.38007 * 119.94312 * 142.46559 * 16 14 13 18 18 C 1.39326 * 119.88066 * 180.02562 * 17 16 14 19 19 C 1.48463 * 120.11574 * 179.97438 * 18 17 16 20 20 N 1.31810 * 126.67466 * 179.71233 * 19 18 17 21 21 N 1.28868 * 107.81797 * 179.83509 * 20 19 18 22 22 N 1.28736 * 109.31989 * 0.43532 * 21 20 19 23 23 N 1.28987 * 108.93999 * 359.72757 * 22 21 20 24 24 C 1.39277 * 119.76865 * 359.97438 * 18 17 16 25 25 C 1.38057 * 119.87819 * 359.97438 * 24 18 17 26 26 C 1.38297 * 120.11703 * 359.72459 * 25 24 18 27 27 C 1.53782 * 113.61408 * 204.99904 * 11 10 8 28 28 C 1.38759 * 119.88822 * 179.97438 * 5 4 2 29 29 C 1.38126 * 119.94094 * 0.02562 * 28 5 4 30 30 C 1.38290 * 120.05768 * 359.97408 * 29 28 5 31 31 C 1.38164 * 120.02624 * 104.99828 * 4 2 1 32 32 H 0.96698 * 114.00095 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47395 * 120.00391 * 2 1 3 34 34 H 1.48494 * 110.00156 * 180.02562 * 3 2 1 35 35 H 1.48496 * 109.99869 * 301.32035 * 3 2 1 36 36 H 1.09001 * 109.47177 * 299.99686 * 7 6 5 37 37 H 1.09002 * 109.46778 * 59.99753 * 7 6 5 38 38 H 0.97003 * 120.00302 * 0.02562 * 10 8 7 39 39 H 1.09006 * 113.60927 * 203.66335 * 13 11 10 40 40 H 1.09002 * 113.61266 * 334.56410 * 13 11 10 41 41 H 1.08000 * 120.05718 * 0.02562 * 17 16 14 42 42 H 0.97002 * 125.34482 * 180.16348 * 21 20 19 43 43 H 1.07995 * 120.06185 * 179.97438 * 24 18 17 44 44 H 1.07999 * 119.93646 * 179.97438 * 25 24 18 45 45 H 1.08003 * 119.87922 * 180.27268 * 26 25 24 46 46 H 1.08996 * 113.61608 * 25.43669 * 27 11 10 47 47 H 1.08998 * 113.61607 * 156.34311 * 27 11 10 48 48 H 1.07998 * 120.02743 * 180.02562 * 28 5 4 49 49 H 1.08005 * 119.97091 * 180.02562 * 29 28 5 50 50 H 1.07995 * 119.94278 * 180.27458 * 30 29 28 51 51 H 1.07997 * 119.97398 * 0.02562 * 31 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7104 -1.2305 5 6 1.8693 -2.0940 -1.3072 6 8 1.3550 -2.8106 -0.2734 7 6 1.3220 -4.2315 -0.4219 8 6 0.7243 -4.8521 0.8146 9 8 0.3627 -4.1470 1.7327 10 7 0.5916 -6.1905 0.8999 11 6 0.0111 -6.7938 2.1022 12 1 0.1068 -6.1588 2.9829 13 6 -1.4084 -7.3463 1.8901 14 6 -0.7461 -8.6722 1.4798 15 1 -0.5212 -8.7369 0.4152 16 6 -1.4595 -9.8925 2.0023 17 6 -1.5524 -11.0245 1.2185 18 6 -2.2127 -12.1518 1.7026 19 6 -2.3162 -13.3722 0.8636 20 7 -2.9029 -14.5059 1.1920 21 7 -2.7815 -15.3155 0.1968 22 7 -2.1285 -14.7340 -0.7481 23 7 -1.8261 -13.5375 -0.3731 24 6 -2.7753 -12.1298 2.9765 25 6 -2.6757 -10.9924 3.7528 26 6 -2.0138 -9.8784 3.2697 27 6 0.4563 -8.2466 2.3388 28 6 2.3321 -2.7451 -2.4417 29 6 2.8538 -2.0144 -3.4914 30 6 2.9146 -0.6351 -3.4125 31 6 2.4537 0.0160 -2.2834 32 1 -0.3933 -0.8834 -0.0004 33 1 1.7924 -0.5139 0.8899 34 1 3.5349 1.7701 -0.0006 35 1 1.5355 2.4771 -1.1921 36 1 0.7154 -4.4922 -1.2892 37 1 2.3361 -4.6058 -0.5620 38 1 0.8812 -6.7545 0.1657 39 1 -1.9917 -7.4154 2.8083 40 1 -1.9498 -6.8594 1.0790 41 1 -1.1140 -11.0365 0.2315 42 1 -3.1245 -16.2223 0.1660 43 1 -3.2885 -13.0007 3.3564 44 1 -3.1120 -10.9742 4.7406 45 1 -1.9343 -8.9922 3.8820 46 1 1.4202 -8.4865 1.8901 47 1 0.3827 -8.5618 3.3796 48 1 2.2845 -3.8222 -2.5040 49 1 3.2139 -2.5207 -4.3749 50 1 3.3188 -0.0653 -4.2361 51 1 2.5023 1.0932 -2.2241 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_280130_17857610_17858608.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 03:30:36 Heat of formation + Delta-G solvation = 108.244900 kcal Electronic energy + Delta-G solvation = -36232.742999 eV Core-core repulsion = 31296.200362 eV Total energy + Delta-G solvation = -4936.542637 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 408.163 amu Computer time = 1.92 seconds Orbital eigenvalues (eV) -45.50592 -41.84136 -41.38160 -40.36401 -39.06676 -38.33660 -37.49711 -35.48966 -34.95180 -34.29603 -32.83896 -32.11459 -31.53385 -31.23367 -29.40980 -26.69816 -26.67058 -26.34860 -25.54011 -25.46736 -23.84177 -23.06912 -22.68634 -22.21100 -21.81248 -20.45034 -19.84980 -19.47838 -18.51728 -18.29702 -18.19034 -17.91212 -17.51781 -17.34099 -16.81932 -16.69657 -16.52608 -16.21422 -15.81651 -15.76134 -15.55291 -15.37038 -15.20842 -15.06837 -14.86572 -14.59318 -14.41876 -14.18780 -14.12672 -13.73496 -13.58234 -13.47058 -13.38463 -13.28293 -12.84666 -12.81614 -12.67107 -12.46249 -12.44372 -12.27889 -12.25476 -12.18616 -12.06257 -11.73300 -11.57651 -11.26141 -11.22031 -11.08309 -10.99855 -10.15086 -10.09714 -9.77290 -9.55497 -9.35544 -4.84115 -0.29881 0.09414 0.13851 0.25805 0.39490 1.29565 1.34108 1.37872 1.40110 1.41734 1.60442 1.89438 2.51097 2.56946 2.64023 2.77532 3.12482 3.46017 3.49417 3.55033 3.68584 3.71581 3.75314 3.89152 3.94246 3.95132 4.01001 4.02261 4.06757 4.09888 4.17467 4.20440 4.21376 4.26152 4.38567 4.39088 4.43386 4.54698 4.57902 4.68351 4.82070 4.82585 4.87121 4.88407 5.02576 5.06953 5.09255 5.12902 5.17776 5.23959 5.37927 5.43829 5.47394 5.50453 5.56279 5.59087 5.69320 5.94723 6.15673 6.43382 6.53093 7.06769 7.11170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.547 6.547 2 C -0.089 4.089 3 Si 0.811 3.189 4 C -0.165 4.165 5 C 0.128 3.872 6 O -0.312 6.312 7 C 0.036 3.964 8 C 0.517 3.483 9 O -0.566 6.566 10 N -0.693 5.693 11 C 0.115 3.885 12 H 0.087 0.913 13 C -0.141 4.141 14 C -0.066 4.066 15 H 0.112 0.888 16 C -0.073 4.073 17 C -0.080 4.080 18 C -0.036 4.036 19 C 0.208 3.792 20 N -0.299 5.299 21 N -0.203 5.203 22 N -0.059 5.059 23 N -0.294 5.294 24 C -0.091 4.091 25 C -0.119 4.119 26 C -0.096 4.096 27 C -0.124 4.124 28 C -0.203 4.203 29 C -0.075 4.075 30 C -0.156 4.156 31 C -0.104 4.104 32 H 0.370 0.630 33 H 0.069 0.931 34 H -0.265 1.265 35 H -0.281 1.281 36 H 0.125 0.875 37 H 0.124 0.876 38 H 0.420 0.580 39 H 0.101 0.899 40 H 0.068 0.932 41 H 0.134 0.866 42 H 0.494 0.506 43 H 0.134 0.866 44 H 0.151 0.849 45 H 0.147 0.853 46 H 0.089 0.911 47 H 0.104 0.896 48 H 0.165 0.835 49 H 0.159 0.841 50 H 0.146 0.854 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.249 -6.214 -0.455 6.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.353 6.353 2 C -0.196 4.196 3 Si 0.712 3.288 4 C -0.166 4.166 5 C 0.082 3.918 6 O -0.225 6.225 7 C -0.042 4.042 8 C 0.303 3.697 9 O -0.443 6.443 10 N -0.347 5.347 11 C 0.010 3.990 12 H 0.105 0.895 13 C -0.180 4.180 14 C -0.084 4.084 15 H 0.130 0.870 16 C -0.074 4.074 17 C -0.100 4.100 18 C -0.039 4.039 19 C -0.072 4.072 20 N -0.151 5.151 21 N -0.054 5.054 22 N -0.054 5.054 23 N -0.166 5.166 24 C -0.111 4.111 25 C -0.137 4.137 26 C -0.114 4.114 27 C -0.161 4.161 28 C -0.221 4.221 29 C -0.093 4.093 30 C -0.174 4.174 31 C -0.121 4.121 32 H 0.218 0.782 33 H 0.087 0.913 34 H -0.191 1.191 35 H -0.208 1.208 36 H 0.142 0.858 37 H 0.141 0.859 38 H 0.258 0.742 39 H 0.119 0.881 40 H 0.087 0.913 41 H 0.152 0.848 42 H 0.352 0.648 43 H 0.152 0.848 44 H 0.168 0.832 45 H 0.165 0.835 46 H 0.107 0.893 47 H 0.123 0.877 48 H 0.182 0.818 49 H 0.177 0.823 50 H 0.163 0.837 51 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.570 -4.832 -0.592 5.115 hybrid contribution -0.372 -2.535 -0.839 2.696 sum 1.198 -7.367 -1.432 7.600 Atomic orbital electron populations 1.86637 1.17729 1.33799 1.97184 1.25457 0.84358 1.14588 0.95194 0.92320 0.76309 0.74542 0.85639 1.19864 1.06256 0.91770 0.98725 1.18909 0.94783 0.90406 0.87686 1.86072 1.77909 1.19182 1.39345 1.22757 1.04760 0.79261 0.97420 1.20408 0.78180 0.82966 0.88107 1.90773 1.50187 1.62348 1.41040 1.45360 1.63164 1.05510 1.20637 1.21875 0.94421 0.94613 0.88084 0.89495 1.23575 0.96288 0.95090 1.03036 1.21610 0.95730 0.90408 1.00668 0.87015 1.19719 0.98729 0.94663 0.94246 1.21133 0.97159 0.91324 1.00368 1.17386 1.04002 0.88996 0.93539 1.24037 0.97194 0.94277 0.91662 1.74897 1.23317 1.01969 1.14932 1.47820 1.34445 1.16852 1.06239 1.78882 1.08869 1.02055 1.15615 1.76056 1.21085 1.08025 1.11437 1.21315 0.97966 0.99584 0.92260 1.21367 0.99212 0.92288 1.00854 1.21490 0.95695 0.99023 0.95210 1.23397 0.98470 0.92381 1.01900 1.21674 1.04627 1.02153 0.93632 1.21421 0.95578 0.93574 0.98712 1.21389 1.02063 0.95702 0.98269 1.21016 0.98069 0.99381 0.93667 0.78234 0.91295 1.19094 1.20826 0.85763 0.85873 0.74185 0.88064 0.91301 0.84779 0.64751 0.84789 0.83178 0.83515 0.89281 0.87724 0.81776 0.82319 0.83660 0.85878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -5.50 12.65 -148.98 -1.89 -7.39 16 2 C -0.09 -0.71 2.33 71.24 0.17 -0.54 16 3 Si 0.81 3.46 30.40 68.60 2.09 5.55 16 4 C -0.17 -1.28 5.28 -19.77 -0.10 -1.38 16 5 C 0.13 0.57 6.62 22.51 0.15 0.72 16 6 O -0.31 -1.43 8.57 -73.34 -0.63 -2.06 16 7 C 0.04 -0.16 5.22 71.24 0.37 0.22 16 8 C 0.52 0.33 7.91 87.66 0.69 1.03 16 9 O -0.57 -6.65 16.10 16.01 0.26 -6.39 16 10 N -0.69 4.29 5.26 -440.02 -2.32 1.97 16 11 C 0.12 -0.53 4.32 45.52 0.20 -0.33 16 12 H 0.09 0.03 7.46 -2.39 -0.02 0.02 16 13 C -0.14 0.77 7.25 31.12 0.23 0.99 16 14 C -0.07 0.48 3.85 -11.01 -0.04 0.44 16 15 H 0.11 -1.05 8.09 -2.39 -0.02 -1.07 16 16 C -0.07 0.26 5.29 -19.90 -0.11 0.15 16 17 C -0.08 0.00 9.36 22.48 0.21 0.21 16 18 C -0.04 -0.09 5.88 -20.04 -0.12 -0.21 16 19 C 0.21 1.10 7.94 137.38 1.09 2.19 16 20 N -0.30 -0.85 12.08 -52.13 -0.63 -1.48 16 21 N -0.20 0.27 7.90 37.02 0.29 0.57 16 22 N -0.06 -0.26 13.47 37.02 0.50 0.24 16 23 N -0.29 -2.11 12.23 -52.18 -0.64 -2.75 16 24 C -0.09 0.01 9.70 22.48 0.22 0.23 16 25 C -0.12 0.41 10.03 22.24 0.22 0.63 16 26 C -0.10 0.43 8.59 22.31 0.19 0.62 16 27 C -0.12 1.01 7.29 31.12 0.23 1.23 16 28 C -0.20 0.25 9.04 22.37 0.20 0.45 16 29 C -0.08 0.10 10.04 22.26 0.22 0.33 16 30 C -0.16 -0.31 10.04 22.28 0.22 -0.09 16 31 C -0.10 -0.67 8.66 22.25 0.19 -0.48 16 32 H 0.37 2.89 8.60 -74.06 -0.64 2.25 16 33 H 0.07 0.58 7.83 -2.39 -0.02 0.56 16 34 H -0.27 -1.69 7.11 99.48 0.71 -0.98 16 35 H -0.28 -2.44 6.81 99.48 0.68 -1.76 16 36 H 0.12 -1.28 7.66 -2.39 -0.02 -1.30 16 37 H 0.12 -1.25 7.66 -2.39 -0.02 -1.27 16 38 H 0.42 -5.51 8.70 -92.71 -0.81 -6.32 16 39 H 0.10 -0.61 6.33 -2.38 -0.02 -0.63 16 40 H 0.07 -0.24 8.14 -2.39 -0.02 -0.25 16 41 H 0.13 -0.07 7.88 -2.91 -0.02 -0.10 16 42 H 0.49 -5.35 8.96 -347.53 -3.12 -8.46 16 43 H 0.13 -0.16 7.88 -2.91 -0.02 -0.18 16 44 H 0.15 -1.14 8.06 -2.91 -0.02 -1.16 16 45 H 0.15 -1.22 6.67 -2.91 -0.02 -1.24 16 46 H 0.09 -0.86 8.14 -2.39 -0.02 -0.88 16 47 H 0.10 -0.87 7.71 -2.39 -0.02 -0.89 16 48 H 0.16 -1.45 6.30 -2.91 -0.02 -1.46 16 49 H 0.16 -1.17 8.06 -2.91 -0.02 -1.19 16 50 H 0.15 -0.32 8.06 -2.91 -0.02 -0.34 16 51 H 0.12 0.77 4.94 -2.91 -0.01 0.76 16 Total: 0.00 -29.22 430.37 -2.04 -31.25 By element: Atomic # 1 Polarization: -22.40 SS G_CDS: -3.51 Total: -25.91 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: 4.44 Total: 6.40 kcal Atomic # 7 Polarization: 1.34 SS G_CDS: -2.79 Total: -1.45 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: -2.26 Total: -15.84 kcal Atomic # 14 Polarization: 3.46 SS G_CDS: 2.09 Total: 5.55 kcal Total: -29.22 -2.04 -31.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_280130_17857610_17858608.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.497 kcal (2) G-P(sol) polarization free energy of solvation -29.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.93 seconds