Wall clock time and date at job start Sat Mar 6 2021 03:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42907 * 1 3 3 Si 1.86295 * 109.47473 * 2 1 4 4 C 1.50703 * 109.46895 * 239.99988 * 2 1 3 5 5 C 1.38268 * 119.94654 * 300.00685 * 4 2 1 6 6 C 1.38136 * 120.05486 * 179.97438 * 5 4 2 7 7 C 1.38735 * 119.94770 * 359.97438 * 6 5 4 8 8 O 1.35896 * 120.05648 * 180.02562 * 7 6 5 9 9 C 1.42900 * 116.99999 * 179.97438 * 8 7 6 10 10 C 1.50698 * 109.47361 * 180.02562 * 9 8 7 11 11 O 1.21287 * 119.99964 * 0.02562 * 10 9 8 12 12 N 1.34778 * 120.00191 * 180.02562 * 10 9 8 13 13 C 1.46507 * 119.99962 * 179.97438 * 12 10 9 14 14 H 1.08993 * 112.85188 * 336.20150 * 13 12 10 15 15 C 1.53959 * 113.61048 * 107.46923 * 13 12 10 16 16 C 1.53778 * 87.01947 * 89.19741 * 15 13 12 17 17 H 1.09006 * 113.61505 * 270.76772 * 16 15 13 18 18 C 1.50700 * 113.61313 * 139.95091 * 16 15 13 19 19 C 1.38007 * 119.94332 * 141.11942 * 18 16 15 20 20 C 1.39318 * 119.88129 * 180.23120 * 19 18 16 21 21 C 1.48466 * 120.11371 * 179.77025 * 20 19 18 22 22 N 1.31816 * 126.67175 * 179.72390 * 21 20 19 23 23 N 1.28867 * 107.81675 * 180.02562 * 22 21 20 24 24 N 1.28728 * 109.32153 * 359.97438 * 23 22 21 25 25 N 1.28990 * 108.93833 * 359.72823 * 24 23 22 26 26 C 1.39282 * 119.76589 * 359.48991 * 20 19 18 27 27 C 1.38048 * 119.87959 * 0.25786 * 26 20 19 28 28 C 1.38294 * 120.11726 * 0.02562 * 27 26 20 29 29 C 1.53777 * 87.17471 * 25.36069 * 16 15 13 30 30 C 1.38729 * 119.88597 * 0.27597 * 7 6 5 31 31 C 1.38144 * 119.94472 * 359.42449 * 30 7 6 32 32 H 0.96698 * 113.99365 * 59.99246 * 1 2 3 33 33 H 1.08991 * 109.47058 * 120.00557 * 2 1 3 34 34 H 1.48501 * 110.00213 * 298.68598 * 3 2 1 35 35 H 1.48501 * 109.99912 * 59.99914 * 3 2 1 36 36 H 1.07999 * 119.97083 * 359.96966 * 5 4 2 37 37 H 1.08008 * 120.02796 * 180.02562 * 6 5 4 38 38 H 1.09004 * 109.46954 * 60.00385 * 9 8 7 39 39 H 1.09000 * 109.47602 * 300.00501 * 9 8 7 40 40 H 0.96994 * 120.00150 * 0.02562 * 12 10 9 41 41 H 1.09000 * 113.66584 * 334.67121 * 15 13 12 42 42 H 1.08995 * 113.61380 * 203.72337 * 15 13 12 43 43 H 1.08004 * 120.05819 * 359.97438 * 19 18 16 44 44 H 0.97005 * 125.34170 * 179.97438 * 23 22 21 45 45 H 1.08000 * 120.05425 * 180.22839 * 26 20 19 46 46 H 1.08002 * 119.93765 * 179.97438 * 27 26 20 47 47 H 1.08002 * 119.87679 * 179.97438 * 28 27 26 48 48 H 1.09002 * 113.61640 * 89.15184 * 29 16 15 49 49 H 1.09001 * 113.61419 * 219.97848 * 29 16 15 50 50 H 1.08000 * 120.03020 * 179.72429 * 30 7 6 51 51 H 1.07998 * 119.97425 * 180.32322 * 31 30 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0502 1.7564 0.0000 4 6 1.9314 -0.7104 -1.2305 5 6 1.5965 -2.0342 -1.4483 6 6 2.0552 -2.6874 -2.5757 7 6 2.8521 -2.0140 -3.4902 8 8 3.3042 -2.6543 -4.6003 9 6 4.1194 -1.8987 -5.4983 10 6 4.5230 -2.7670 -6.6620 11 8 4.1489 -3.9194 -6.7172 12 7 5.2997 -2.2630 -7.6415 13 6 5.6924 -3.1074 -8.7725 14 1 5.6678 -4.1709 -8.5354 15 6 4.9746 -2.7505 -10.0869 16 6 6.1257 -1.7666 -10.3547 17 1 5.9524 -0.7704 -9.9473 18 6 6.5754 -1.7406 -11.7928 19 6 6.9223 -0.5430 -12.3846 20 6 7.3332 -0.5199 -13.7156 21 6 7.7026 0.7662 -14.3588 22 7 8.1113 0.9367 -15.6004 23 7 8.3315 2.1945 -15.7738 24 7 8.0749 2.8263 -14.6821 25 7 7.6798 1.9806 -13.7919 26 6 7.4018 -1.7082 -14.4389 27 6 7.0575 -2.9012 -13.8357 28 6 6.6446 -2.9178 -12.5159 29 6 6.9961 -2.6579 -9.4532 30 6 3.1910 -0.6874 -3.2667 31 6 2.7246 -0.0368 -2.1409 32 1 -0.3932 0.4418 -0.7650 33 1 1.7924 -0.5139 0.8899 34 1 1.5880 2.4586 -1.2242 35 1 1.5617 2.4678 1.2085 36 1 0.9758 -2.5578 -0.7363 37 1 1.7931 -3.7213 -2.7456 38 1 5.0115 -1.5531 -4.9758 39 1 3.5571 -1.0396 -5.8643 40 1 5.5992 -1.3415 -7.5972 41 1 4.0100 -2.2645 -9.9407 42 1 4.9307 -3.5752 -10.7982 43 1 6.8713 0.3751 -11.8180 44 1 8.6419 2.6014 -16.5979 45 1 7.7232 -1.6961 -15.4698 46 1 7.1099 -3.8232 -14.3958 47 1 6.3758 -3.8534 -12.0480 48 1 7.5058 -3.4574 -9.9909 49 1 7.6620 -2.0974 -8.7971 50 1 3.8149 -0.1623 -3.9749 51 1 2.9838 0.9975 -1.9692 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_280130_17857610_17861474.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 03:30:41 Heat of formation + Delta-G solvation = 108.534254 kcal Electronic energy + Delta-G solvation = -35481.515675 eV Core-core repulsion = 30544.985585 eV Total energy + Delta-G solvation = -4936.530089 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 408.163 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -45.49632 -41.73497 -41.23938 -40.33818 -39.23817 -38.62030 -37.21590 -35.47868 -34.93546 -34.27993 -32.43239 -32.03605 -31.71792 -31.40455 -29.51744 -26.65119 -26.46307 -26.12661 -25.52189 -25.41942 -24.02271 -23.06336 -22.57840 -22.09744 -21.76109 -20.43599 -19.82791 -19.47371 -18.48629 -18.30083 -18.18011 -17.83398 -17.40427 -17.10081 -16.80101 -16.55727 -16.37601 -16.20012 -16.02047 -15.68869 -15.54258 -15.42473 -15.11828 -14.99952 -14.62470 -14.56170 -14.40660 -14.35058 -14.17809 -13.72281 -13.58818 -13.46720 -13.44891 -13.34956 -13.24551 -12.83208 -12.44900 -12.43635 -12.28444 -12.24184 -12.12635 -12.06782 -12.02523 -11.72402 -11.61360 -11.56386 -11.20408 -10.99501 -10.58023 -10.12844 -10.01935 -9.76245 -9.54359 -9.21586 -4.89714 -0.28852 0.14936 0.29043 0.32778 0.40610 1.30651 1.35130 1.38861 1.44992 1.49231 1.62602 1.99811 2.60868 2.65121 2.66801 2.78607 3.13593 3.45122 3.50946 3.53920 3.73024 3.74936 3.77322 3.84700 3.96421 3.97187 4.04331 4.06330 4.10983 4.13510 4.22370 4.27740 4.32767 4.39669 4.44396 4.44677 4.57637 4.59014 4.69124 4.72104 4.83653 4.88286 4.90398 4.99185 5.04004 5.08485 5.10558 5.17820 5.19863 5.27429 5.44868 5.48668 5.51139 5.52776 5.57240 5.69942 5.72460 5.95730 6.28467 6.49050 6.51671 7.07872 7.15107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.552 6.552 2 C -0.082 4.082 3 Si 0.771 3.229 4 C -0.159 4.159 5 C -0.060 4.060 6 C -0.167 4.167 7 C 0.121 3.879 8 O -0.320 6.320 9 C 0.036 3.964 10 C 0.515 3.485 11 O -0.572 6.572 12 N -0.692 5.692 13 C 0.115 3.885 14 H 0.085 0.915 15 C -0.142 4.142 16 C -0.066 4.066 17 H 0.113 0.887 18 C -0.073 4.073 19 C -0.079 4.079 20 C -0.036 4.036 21 C 0.208 3.792 22 N -0.299 5.299 23 N -0.203 5.203 24 N -0.059 5.059 25 N -0.293 5.293 26 C -0.091 4.091 27 C -0.120 4.120 28 C -0.096 4.096 29 C -0.123 4.123 30 C -0.200 4.200 31 C -0.076 4.076 32 H 0.385 0.615 33 H 0.121 0.879 34 H -0.279 1.279 35 H -0.308 1.308 36 H 0.133 0.867 37 H 0.126 0.874 38 H 0.129 0.871 39 H 0.125 0.875 40 H 0.421 0.579 41 H 0.068 0.932 42 H 0.100 0.900 43 H 0.135 0.865 44 H 0.494 0.506 45 H 0.134 0.866 46 H 0.150 0.850 47 H 0.147 0.853 48 H 0.104 0.896 49 H 0.090 0.910 50 H 0.165 0.835 51 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.002 3.759 -3.703 7.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.360 6.360 2 C -0.190 4.190 3 Si 0.677 3.323 4 C -0.159 4.159 5 C -0.079 4.079 6 C -0.185 4.185 7 C 0.076 3.924 8 O -0.233 6.233 9 C -0.042 4.042 10 C 0.302 3.698 11 O -0.450 6.450 12 N -0.346 5.346 13 C 0.009 3.991 14 H 0.103 0.897 15 C -0.181 4.181 16 C -0.084 4.084 17 H 0.131 0.869 18 C -0.073 4.073 19 C -0.099 4.099 20 C -0.039 4.039 21 C -0.071 4.071 22 N -0.152 5.152 23 N -0.054 5.054 24 N -0.054 5.054 25 N -0.166 5.166 26 C -0.111 4.111 27 C -0.138 4.138 28 C -0.114 4.114 29 C -0.161 4.161 30 C -0.218 4.218 31 C -0.093 4.093 32 H 0.235 0.765 33 H 0.139 0.861 34 H -0.205 1.205 35 H -0.236 1.236 36 H 0.151 0.849 37 H 0.144 0.856 38 H 0.147 0.853 39 H 0.143 0.857 40 H 0.260 0.740 41 H 0.087 0.913 42 H 0.118 0.882 43 H 0.153 0.847 44 H 0.352 0.648 45 H 0.152 0.848 46 H 0.168 0.832 47 H 0.164 0.836 48 H 0.122 0.878 49 H 0.109 0.891 50 H 0.183 0.817 51 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 5.691 3.943 -3.301 7.670 hybrid contribution -0.992 0.077 -1.248 1.596 sum 4.699 4.020 -4.549 7.677 Atomic orbital electron populations 1.86570 1.18838 1.80385 1.50176 1.25237 0.83236 1.11990 0.98581 0.94152 0.90163 0.71688 0.76346 1.20288 1.02106 0.95173 0.98369 1.20898 0.97146 0.94040 0.95768 1.20620 1.01558 1.01287 0.95062 1.19210 0.94627 0.92003 0.86532 1.86127 1.65213 1.40316 1.31640 1.22758 0.97837 0.94175 0.89420 1.20539 0.78095 0.87503 0.83681 1.90769 1.55321 1.20269 1.78650 1.45356 1.51337 1.16515 1.21388 1.21909 0.96538 0.95489 0.85152 0.89663 1.23605 0.97877 0.99737 0.96860 1.21615 0.96334 1.00057 0.90364 0.86879 1.19723 0.99120 0.92292 0.96186 1.21139 0.96974 0.99059 0.92763 1.17387 1.05200 0.86947 0.94394 1.24033 1.00544 0.94945 0.87621 1.74901 1.20512 1.00354 1.19397 1.47818 1.40922 1.02236 1.14386 1.78881 1.12962 1.22419 0.91150 1.76052 1.18185 0.98814 1.23516 1.21311 0.98178 0.91290 1.00371 1.21358 0.98791 0.98138 0.95466 1.21482 0.97081 0.98750 0.94125 1.23390 0.95279 0.99928 0.97471 1.21503 1.05761 0.93252 1.01289 1.21068 0.95369 1.00155 0.92718 0.76544 0.86092 1.20528 1.23635 0.84927 0.85602 0.85314 0.85741 0.74048 0.91348 0.88186 0.84701 0.64758 0.84813 0.83237 0.83572 0.87772 0.89096 0.81712 0.82981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -1.58 12.77 -148.98 -1.90 -3.48 16 2 C -0.08 0.07 2.82 71.24 0.20 0.27 16 3 Si 0.77 -2.42 29.78 68.60 2.04 -0.38 16 4 C -0.16 0.03 5.39 -19.85 -0.11 -0.08 16 5 C -0.06 -0.15 9.60 22.25 0.21 0.06 16 6 C -0.17 -0.75 9.99 22.36 0.22 -0.52 16 7 C 0.12 0.34 6.69 22.51 0.15 0.49 16 8 O -0.32 -1.62 9.67 -73.34 -0.71 -2.33 16 9 C 0.04 -0.16 5.22 71.24 0.37 0.21 16 10 C 0.52 0.63 7.91 87.66 0.69 1.32 16 11 O -0.57 -7.53 16.10 15.98 0.26 -7.27 16 12 N -0.69 4.21 5.26 -439.74 -2.32 1.90 16 13 C 0.11 -0.50 4.33 45.58 0.20 -0.30 16 14 H 0.09 0.07 7.46 -2.39 -0.02 0.05 16 15 C -0.14 0.74 7.27 31.18 0.23 0.97 16 16 C -0.07 0.48 3.85 -11.02 -0.04 0.44 16 17 H 0.11 -1.09 8.08 -2.38 -0.02 -1.11 16 18 C -0.07 0.27 5.29 -19.90 -0.11 0.16 16 19 C -0.08 0.01 9.36 22.48 0.21 0.22 16 20 C -0.04 -0.09 5.88 -20.04 -0.12 -0.21 16 21 C 0.21 1.07 7.94 137.38 1.09 2.16 16 22 N -0.30 -0.82 12.08 -52.13 -0.63 -1.45 16 23 N -0.20 0.30 7.90 37.02 0.29 0.59 16 24 N -0.06 -0.25 13.47 37.02 0.50 0.25 16 25 N -0.29 -2.06 12.23 -52.18 -0.64 -2.69 16 26 C -0.09 0.01 9.70 22.48 0.22 0.23 16 27 C -0.12 0.41 10.03 22.24 0.22 0.63 16 28 C -0.10 0.43 8.53 22.31 0.19 0.62 16 29 C -0.12 1.02 7.29 31.12 0.23 1.24 16 30 C -0.20 0.65 9.04 22.37 0.20 0.85 16 31 C -0.08 0.25 8.66 22.26 0.19 0.44 16 32 H 0.39 -1.05 8.70 -74.06 -0.64 -1.70 16 33 H 0.12 -0.23 7.96 -2.39 -0.02 -0.25 16 34 H -0.28 0.03 7.11 99.48 0.71 0.74 16 35 H -0.31 -1.65 7.11 99.48 0.71 -0.94 16 36 H 0.13 0.24 8.06 -2.91 -0.02 0.21 16 37 H 0.13 0.64 8.06 -2.91 -0.02 0.62 16 38 H 0.13 -1.45 7.65 -2.38 -0.02 -1.47 16 39 H 0.12 -1.33 7.67 -2.39 -0.02 -1.35 16 40 H 0.42 -5.67 8.70 -92.71 -0.81 -6.48 16 41 H 0.07 -0.22 8.14 -2.39 -0.02 -0.24 16 42 H 0.10 -0.57 6.39 -2.39 -0.02 -0.59 16 43 H 0.14 -0.11 7.88 -2.91 -0.02 -0.14 16 44 H 0.49 -5.40 8.96 -347.54 -3.12 -8.51 16 45 H 0.13 -0.16 7.88 -2.91 -0.02 -0.18 16 46 H 0.15 -1.12 8.06 -2.91 -0.02 -1.15 16 47 H 0.15 -1.20 6.71 -2.91 -0.02 -1.22 16 48 H 0.10 -0.88 7.64 -2.39 -0.02 -0.90 16 49 H 0.09 -0.91 8.14 -2.39 -0.02 -0.93 16 50 H 0.17 -1.76 6.30 -2.91 -0.02 -1.78 16 51 H 0.15 -1.25 4.87 -2.91 -0.01 -1.27 16 Total: 0.00 -32.11 431.58 -2.13 -34.24 By element: Atomic # 1 Polarization: -25.09 SS G_CDS: -3.49 Total: -28.57 kcal Atomic # 6 Polarization: 4.74 SS G_CDS: 4.46 Total: 9.19 kcal Atomic # 7 Polarization: 1.38 SS G_CDS: -2.79 Total: -1.41 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: -2.35 Total: -13.08 kcal Atomic # 14 Polarization: -2.42 SS G_CDS: 2.04 Total: -0.38 kcal Total: -32.11 -2.13 -34.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_280130_17857610_17861474.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.779 kcal (2) G-P(sol) polarization free energy of solvation -32.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds