Wall clock time and date at job start Sat Mar 6 2021 03:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86300 * 109.47072 * 2 1 4 4 C 1.50698 * 109.47182 * 120.00049 * 2 1 3 5 5 C 1.34227 * 126.50050 * 254.97343 * 4 2 1 6 6 N 1.36835 * 109.94126 * 179.97438 * 5 4 2 7 7 C 1.46497 * 125.06558 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.47009 * 265.02355 * 7 6 5 9 9 O 1.21284 * 120.00042 * 0.02562 * 8 7 6 10 10 N 1.34782 * 120.00025 * 179.97438 * 8 7 6 11 11 C 1.46493 * 120.00296 * 180.02562 * 10 8 7 12 12 H 1.09012 * 112.84636 * 23.80899 * 11 10 8 13 13 C 1.53775 * 113.61777 * 155.00301 * 11 10 8 14 14 C 1.53782 * 87.08064 * 89.12073 * 13 11 10 15 15 H 1.09006 * 113.61488 * 270.80146 * 14 13 11 16 16 C 1.50697 * 113.61613 * 139.98765 * 14 13 11 17 17 C 1.37999 * 119.94618 * 119.99790 * 16 14 13 18 18 C 1.39321 * 119.88338 * 179.97438 * 17 16 14 19 19 C 1.48470 * 120.11782 * 179.97438 * 18 17 16 20 20 N 1.31801 * 126.67356 * 180.02562 * 19 18 17 21 21 N 1.28872 * 107.81808 * 179.97438 * 20 19 18 22 22 N 1.28730 * 109.31815 * 359.97438 * 21 20 19 23 23 N 1.28993 * 108.94107 * 359.74881 * 22 21 20 24 24 C 1.39281 * 119.76481 * 359.97438 * 18 17 16 25 25 C 1.38047 * 119.88066 * 0.02562 * 24 18 17 26 26 C 1.38289 * 120.11889 * 359.71973 * 25 24 18 27 27 C 1.53776 * 113.61691 * 252.50630 * 11 10 8 28 28 C 1.37698 * 109.87390 * 0.02562 * 6 5 4 29 29 C 1.39083 * 133.52109 * 180.02562 * 28 6 5 30 30 C 1.37788 * 119.78149 * 180.02562 * 29 28 6 31 31 C 1.38787 * 120.66686 * 359.97438 * 30 29 28 32 32 C 1.36665 * 120.52924 * 0.02562 * 31 30 29 33 33 C 1.39592 * 119.76143 * 359.97438 * 32 31 30 34 34 H 0.96698 * 114.00025 * 299.99806 * 1 2 3 35 35 H 1.09001 * 109.47035 * 240.00147 * 2 1 3 36 36 H 1.48495 * 109.99973 * 300.00088 * 3 2 1 37 37 H 1.48499 * 109.99849 * 61.32032 * 3 2 1 38 38 H 1.08000 * 125.03493 * 359.97438 * 5 4 2 39 39 H 1.09000 * 109.47119 * 25.02720 * 7 6 5 40 40 H 1.09006 * 109.46875 * 145.02825 * 7 6 5 41 41 H 0.97002 * 119.99294 * 0.02562 * 10 8 7 42 42 H 1.08996 * 113.61864 * 203.66824 * 13 11 10 43 43 H 1.09003 * 113.61609 * 334.48966 * 13 11 10 44 44 H 1.07998 * 120.05589 * 0.02562 * 17 16 14 45 45 H 0.97008 * 125.34283 * 180.02562 * 21 20 19 46 46 H 1.08003 * 120.05642 * 179.97438 * 24 18 17 47 47 H 1.07999 * 119.94159 * 179.97438 * 25 24 18 48 48 H 1.08003 * 119.88372 * 180.30305 * 26 25 24 49 49 H 1.09000 * 113.61986 * 25.42649 * 27 11 10 50 50 H 1.09003 * 113.61415 * 156.33625 * 27 11 10 51 51 H 1.08000 * 120.10592 * 0.02562 * 29 28 6 52 52 H 1.08002 * 119.66861 * 179.97438 * 30 29 28 53 53 H 1.08001 * 119.73763 * 180.02562 * 31 30 29 54 54 H 1.07997 * 120.12319 * 179.72837 * 32 31 30 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 2.4613 -0.1377 2.3226 6 7 2.8026 -1.0990 3.2346 7 6 3.4081 -0.8404 4.5433 8 6 4.9063 -0.9638 4.4369 9 8 5.4179 -1.2400 3.3725 10 7 5.6777 -0.7662 5.5242 11 6 7.1341 -0.8856 5.4207 12 1 7.5010 -0.7244 4.4069 13 6 7.8956 -0.0802 6.4866 14 6 7.8037 -1.3275 7.3816 15 1 6.9038 -1.3588 7.9959 16 6 9.0595 -1.5992 8.1691 17 6 9.0163 -1.6221 9.5482 18 6 10.1779 -1.8741 10.2750 19 6 10.1376 -1.8994 11.7589 20 7 11.1519 -2.1228 12.5703 21 7 10.7107 -2.0603 13.7796 22 7 9.4494 -1.8038 13.7600 23 7 9.0637 -1.6926 12.5341 24 6 11.3773 -2.1021 9.6045 25 6 11.4093 -2.0769 8.2246 26 6 10.2523 -1.8316 7.5080 27 6 7.6975 -2.1515 6.0876 28 6 2.4933 -2.3457 2.7386 29 6 2.6272 -3.6362 3.2399 30 6 2.2138 -4.7107 2.4829 31 6 1.6635 -4.5193 1.2232 32 6 1.5226 -3.2601 0.7112 33 6 1.9348 -2.1571 1.4609 34 1 -0.3933 0.4417 0.7650 35 1 1.7924 -0.5138 -0.8900 36 1 1.5615 2.4679 -1.2084 37 1 1.5879 2.4585 1.2242 38 1 2.5980 0.9246 2.4612 39 1 3.1488 0.1662 4.8711 40 1 3.0343 -1.5656 5.2662 41 1 5.2685 -0.5449 6.3754 42 1 8.9148 0.1745 6.1961 43 1 7.3381 0.7750 6.8687 44 1 8.0835 -1.4459 10.0632 45 1 11.2454 -2.1860 14.5792 46 1 12.2807 -2.2975 10.1632 47 1 12.3388 -2.2532 7.7038 48 1 10.2808 -1.8176 6.4284 49 1 6.9795 -2.9694 6.1485 50 1 8.6625 -2.4630 5.6879 51 1 3.0538 -3.7954 4.2192 52 1 2.3189 -5.7120 2.8737 53 1 1.3441 -5.3723 0.6429 54 1 1.0976 -3.1190 -0.2716 There are 78 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 78 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_280130_17857610_17875166.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 03:30:46 Heat of formation + Delta-G solvation = 187.151331 kcal Electronic energy + Delta-G solvation = -39514.344450 eV Core-core repulsion = 34422.489834 eV Total energy + Delta-G solvation = -5091.854616 eV No. of doubly occupied orbitals = 78 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 431.174 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -45.50005 -42.52572 -41.49080 -40.31479 -38.88931 -38.12970 -37.64370 -35.47888 -34.91665 -34.34711 -33.92634 -32.07791 -31.54018 -31.19308 -30.22418 -28.94072 -26.65053 -26.49125 -25.84957 -25.51140 -25.25273 -23.75914 -23.06844 -22.84220 -22.12019 -21.75359 -20.66472 -20.41905 -19.79502 -18.67777 -18.52830 -18.18423 -17.86924 -17.71367 -17.32452 -16.79656 -16.50918 -16.39555 -16.28236 -16.20641 -16.00744 -15.64296 -15.47651 -15.27472 -15.10275 -14.87687 -14.70790 -14.61552 -14.42075 -14.36711 -14.13084 -14.05554 -13.65885 -13.47711 -13.43290 -13.31764 -13.07900 -12.82426 -12.70362 -12.55237 -12.45624 -12.43075 -12.38335 -12.24660 -12.04820 -11.98634 -11.72340 -11.72001 -11.55393 -11.19337 -11.09935 -10.53341 -10.43576 -10.07858 -9.76682 -9.54623 -9.14346 -8.61672 -4.85039 -0.29249 0.14485 0.15893 0.40264 0.65653 1.30231 1.36621 1.38455 1.43205 1.50151 1.59757 1.70204 1.98786 2.23408 2.64641 2.78331 2.96773 3.13194 3.52505 3.55149 3.62021 3.68186 3.73356 3.74801 3.81734 3.86268 3.96961 4.04333 4.06774 4.10471 4.16873 4.22183 4.23502 4.27496 4.31746 4.39264 4.44127 4.51723 4.58975 4.60551 4.71441 4.73497 4.80640 4.83882 4.88704 4.90211 4.92663 5.04442 5.08813 5.10606 5.15482 5.21447 5.44549 5.48575 5.52550 5.54870 5.56915 5.68089 5.71449 5.75297 5.76949 5.95373 6.20961 6.25476 6.52143 6.61659 7.07406 7.19380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.553 6.553 2 C -0.051 4.051 3 Si 0.765 3.235 4 C -0.216 4.216 5 C 0.075 3.925 6 N -0.465 5.465 7 C 0.086 3.914 8 C 0.495 3.505 9 O -0.566 6.566 10 N -0.695 5.695 11 C 0.118 3.882 12 H 0.085 0.915 13 C -0.123 4.123 14 C -0.066 4.066 15 H 0.112 0.888 16 C -0.073 4.073 17 C -0.080 4.080 18 C -0.036 4.036 19 C 0.208 3.792 20 N -0.299 5.299 21 N -0.203 5.203 22 N -0.059 5.059 23 N -0.293 5.293 24 C -0.091 4.091 25 C -0.120 4.120 26 C -0.096 4.096 27 C -0.142 4.142 28 C 0.092 3.908 29 C -0.133 4.133 30 C -0.108 4.108 31 C -0.154 4.154 32 C -0.088 4.088 33 C -0.115 4.115 34 H 0.383 0.617 35 H 0.103 0.897 36 H -0.302 1.302 37 H -0.260 1.260 38 H 0.197 0.803 39 H 0.162 0.838 40 H 0.142 0.858 41 H 0.419 0.581 42 H 0.102 0.898 43 H 0.089 0.911 44 H 0.135 0.865 45 H 0.494 0.506 46 H 0.134 0.866 47 H 0.150 0.850 48 H 0.146 0.854 49 H 0.066 0.934 50 H 0.098 0.902 51 H 0.132 0.868 52 H 0.144 0.856 53 H 0.136 0.864 54 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.733 2.387 6.747 8.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.361 6.361 2 C -0.159 4.159 3 Si 0.668 3.332 4 C -0.223 4.223 5 C -0.051 4.051 6 N -0.148 5.148 7 C -0.038 4.038 8 C 0.281 3.719 9 O -0.443 6.443 10 N -0.349 5.349 11 C 0.012 3.988 12 H 0.103 0.897 13 C -0.161 4.161 14 C -0.084 4.084 15 H 0.130 0.870 16 C -0.073 4.073 17 C -0.100 4.100 18 C -0.039 4.039 19 C -0.072 4.072 20 N -0.151 5.151 21 N -0.054 5.054 22 N -0.054 5.054 23 N -0.166 5.166 24 C -0.112 4.112 25 C -0.137 4.137 26 C -0.114 4.114 27 C -0.181 4.181 28 C -0.013 4.013 29 C -0.154 4.154 30 C -0.127 4.127 31 C -0.173 4.173 32 C -0.107 4.107 33 C -0.120 4.120 34 H 0.232 0.768 35 H 0.121 0.879 36 H -0.230 1.230 37 H -0.185 1.185 38 H 0.214 0.786 39 H 0.179 0.821 40 H 0.159 0.841 41 H 0.257 0.743 42 H 0.120 0.880 43 H 0.108 0.892 44 H 0.152 0.848 45 H 0.352 0.648 46 H 0.152 0.848 47 H 0.168 0.832 48 H 0.164 0.836 49 H 0.085 0.915 50 H 0.116 0.884 51 H 0.150 0.850 52 H 0.162 0.838 53 H 0.153 0.847 54 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 4.814 2.845 6.397 8.496 hybrid contribution -0.560 -0.586 1.028 1.309 sum 4.254 2.259 7.424 8.850 Atomic orbital electron populations 1.86562 1.19114 1.80603 1.49845 1.24582 0.82785 1.11631 0.96910 0.94051 0.90409 0.71107 0.77608 1.20697 1.11355 0.91871 0.98377 1.22009 0.99204 0.95180 0.88671 1.43428 1.51932 1.03830 1.15596 1.21978 0.88972 1.08885 0.83972 1.21342 0.90329 0.76279 0.83955 1.90806 1.75582 1.48114 1.29813 1.45507 1.06144 1.70893 1.12307 1.21809 0.79899 0.97164 0.99930 0.89682 1.23375 1.01773 0.96734 0.94235 1.21609 0.95379 0.97042 0.94352 0.87017 1.19736 0.95784 0.99453 0.92374 1.21132 0.97314 0.97682 0.93848 1.17388 0.96056 1.06586 0.83874 1.24039 0.85083 1.00911 0.97152 1.74897 1.26576 1.22403 0.91258 1.47822 1.06648 1.42550 1.08341 1.78882 0.96402 1.14160 1.15979 1.76057 1.25882 1.19247 0.95387 1.21310 0.96650 0.97892 0.95307 1.21359 0.99774 0.99569 0.93045 1.21485 0.91739 0.96875 1.01351 1.23564 1.02246 0.96977 0.95307 1.18388 1.01560 0.86989 0.94387 1.20238 1.04629 0.89105 1.01401 1.21122 0.98189 0.98999 0.94349 1.20911 1.02362 0.97023 0.96972 1.20448 0.99083 0.91707 0.99423 1.19339 1.04030 0.93796 0.94810 0.76762 0.87868 1.22973 1.18503 0.78609 0.82097 0.84077 0.74270 0.88002 0.89198 0.84759 0.64752 0.84819 0.83230 0.83594 0.91479 0.88390 0.84968 0.83780 0.84652 0.86374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -3.72 12.88 -148.98 -1.92 -5.63 16 2 C -0.05 -0.21 3.06 71.24 0.22 0.01 16 3 Si 0.77 -0.29 30.82 68.60 2.11 1.83 16 4 C -0.22 -1.21 5.58 -18.63 -0.10 -1.31 16 5 C 0.07 0.08 9.89 83.00 0.82 0.90 16 6 N -0.47 -0.61 2.27 -519.99 -1.18 -1.79 16 7 C 0.09 -0.66 6.48 85.63 0.56 -0.10 16 8 C 0.50 -1.20 7.90 87.66 0.69 -0.51 16 9 O -0.57 -5.01 16.02 -3.04 -0.05 -5.06 16 10 N -0.70 5.80 5.26 -440.04 -2.32 3.48 16 11 C 0.12 -0.70 4.32 45.52 0.20 -0.50 16 12 H 0.08 -0.07 7.46 -2.38 -0.02 -0.09 16 13 C -0.12 1.13 7.29 31.12 0.23 1.35 16 14 C -0.07 0.52 3.85 -11.01 -0.04 0.48 16 15 H 0.11 -1.12 8.09 -2.38 -0.02 -1.14 16 16 C -0.07 0.29 5.28 -19.90 -0.11 0.19 16 17 C -0.08 0.03 9.36 22.47 0.21 0.24 16 18 C -0.04 -0.08 5.88 -20.04 -0.12 -0.20 16 19 C 0.21 1.04 7.94 137.39 1.09 2.13 16 20 N -0.30 -0.78 12.08 -52.13 -0.63 -1.41 16 21 N -0.20 0.32 7.90 37.02 0.29 0.61 16 22 N -0.06 -0.24 13.47 37.02 0.50 0.26 16 23 N -0.29 -2.02 12.23 -52.18 -0.64 -2.66 16 24 C -0.09 0.03 9.70 22.48 0.22 0.25 16 25 C -0.12 0.43 10.03 22.24 0.22 0.66 16 26 C -0.10 0.45 8.62 22.31 0.19 0.65 16 27 C -0.14 0.87 7.25 31.12 0.23 1.09 16 28 C 0.09 0.64 6.80 39.03 0.27 0.91 16 29 C -0.13 -0.68 10.00 22.37 0.22 -0.46 16 30 C -0.11 -0.53 10.01 22.29 0.22 -0.31 16 31 C -0.15 -1.03 9.97 22.03 0.22 -0.81 16 32 C -0.09 -0.84 10.05 22.23 0.22 -0.62 16 33 C -0.12 -1.13 6.35 -20.20 -0.13 -1.25 16 34 H 0.38 0.02 8.70 -74.06 -0.64 -0.62 16 35 H 0.10 0.54 7.96 -2.39 -0.02 0.52 16 36 H -0.30 -2.20 7.11 99.48 0.71 -1.50 16 37 H -0.26 0.12 7.00 99.48 0.70 0.81 16 38 H 0.20 -1.13 6.27 -2.91 -0.02 -1.15 16 39 H 0.16 -2.49 8.12 -2.39 -0.02 -2.51 16 40 H 0.14 -1.72 8.14 -2.38 -0.02 -1.74 16 41 H 0.42 -6.30 8.70 -92.71 -0.81 -7.11 16 42 H 0.10 -0.91 7.73 -2.39 -0.02 -0.93 16 43 H 0.09 -0.97 8.14 -2.39 -0.02 -0.99 16 44 H 0.13 -0.13 7.88 -2.91 -0.02 -0.15 16 45 H 0.49 -5.45 8.96 -347.52 -3.12 -8.57 16 46 H 0.13 -0.18 7.88 -2.91 -0.02 -0.20 16 47 H 0.15 -1.16 8.06 -2.91 -0.02 -1.18 16 48 H 0.15 -1.24 6.63 -2.91 -0.02 -1.26 16 49 H 0.07 -0.27 8.14 -2.39 -0.02 -0.29 16 50 H 0.10 -0.62 6.29 -2.39 -0.01 -0.63 16 51 H 0.13 0.04 8.06 -2.91 -0.02 0.02 16 52 H 0.14 -0.02 8.06 -2.91 -0.02 -0.04 16 53 H 0.14 0.36 8.06 -2.91 -0.02 0.34 16 54 H 0.12 1.02 8.06 -2.91 -0.02 1.00 16 Total: 0.00 -33.18 458.05 -1.83 -35.00 By element: Atomic # 1 Polarization: -23.88 SS G_CDS: -3.53 Total: -27.41 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: 5.53 Total: 2.79 kcal Atomic # 7 Polarization: 2.46 SS G_CDS: -3.97 Total: -1.51 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: -1.97 Total: -10.70 kcal Atomic # 14 Polarization: -0.29 SS G_CDS: 2.11 Total: 1.83 kcal Total: -33.18 -1.83 -35.00 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_280130_17857610_17875166.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 222.156 kcal (2) G-P(sol) polarization free energy of solvation -33.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 188.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 187.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds