Wall clock time and date at job start Sat Mar 6 2021 03:30:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42894 * 1 3 3 Si 1.86298 * 109.47725 * 2 1 4 4 C 1.50699 * 109.47188 * 120.00199 * 2 1 3 5 5 C 1.38250 * 119.97460 * 244.99417 * 4 2 1 6 6 C 1.38280 * 120.11289 * 179.97438 * 5 4 2 7 7 C 1.38116 * 120.05809 * 0.02562 * 6 5 4 8 8 C 1.38753 * 119.94689 * 359.97327 * 7 6 5 9 9 O 1.35901 * 120.06231 * 180.02562 * 8 7 6 10 10 C 1.42907 * 116.99562 * 0.02562 * 9 8 7 11 11 C 1.50697 * 109.46727 * 179.97438 * 10 9 8 12 12 O 1.21279 * 120.00373 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99822 * 179.97438 * 11 10 9 14 14 C 1.46497 * 120.00342 * 180.02562 * 13 11 10 15 15 H 1.09008 * 112.84689 * 334.67293 * 14 13 11 16 16 C 1.53782 * 113.61569 * 105.86304 * 14 13 11 17 17 C 1.54052 * 86.98476 * 89.16721 * 16 14 13 18 18 H 1.09005 * 113.60671 * 270.88984 * 17 16 14 19 19 C 1.50688 * 113.62173 * 139.97956 * 17 16 14 20 20 C 1.38010 * 119.94151 * 142.22796 * 19 17 16 21 21 C 1.39329 * 119.87947 * 179.72897 * 20 19 17 22 22 C 1.48460 * 120.11556 * 180.27373 * 21 20 19 23 23 N 1.31812 * 126.67437 * 180.02562 * 22 21 20 24 24 N 1.28868 * 107.81803 * 179.89123 * 23 22 21 25 25 N 1.28731 * 109.31939 * 0.38284 * 24 23 22 26 26 N 1.28987 * 108.94272 * 359.75471 * 25 24 23 27 27 C 1.39280 * 119.76525 * 0.56806 * 21 20 19 28 28 C 1.38044 * 119.87933 * 359.70584 * 27 21 20 29 29 C 1.38297 * 120.12030 * 0.02562 * 28 27 21 30 30 C 1.53775 * 87.07758 * 25.42962 * 17 16 14 31 31 C 1.38165 * 119.97366 * 64.72148 * 4 2 1 32 32 H 0.96709 * 113.99337 * 300.00145 * 1 2 3 33 33 H 1.09006 * 109.47099 * 239.99662 * 2 1 3 34 34 H 1.48506 * 109.99834 * 300.00610 * 3 2 1 35 35 H 1.48502 * 110.00011 * 61.31874 * 3 2 1 36 36 H 1.07999 * 119.94144 * 359.97438 * 5 4 2 37 37 H 1.08005 * 119.97066 * 179.97438 * 6 5 4 38 38 H 1.08006 * 120.03040 * 179.97438 * 7 6 5 39 39 H 1.08996 * 109.46801 * 299.99966 * 10 9 8 40 40 H 1.09004 * 109.46915 * 59.99662 * 10 9 8 41 41 H 0.96999 * 120.00123 * 0.02562 * 13 11 10 42 42 H 1.09000 * 113.61751 * 203.67033 * 16 14 13 43 43 H 1.09001 * 113.61360 * 334.57498 * 16 14 13 44 44 H 1.08001 * 120.06261 * 359.97438 * 20 19 17 45 45 H 0.97001 * 125.34164 * 180.13715 * 24 23 22 46 46 H 1.07998 * 120.05376 * 179.72765 * 27 21 20 47 47 H 1.08006 * 119.93888 * 180.02562 * 28 27 21 48 48 H 1.08003 * 119.87934 * 179.97438 * 29 28 27 49 49 H 1.09003 * 113.62005 * 220.02217 * 30 17 16 50 50 H 1.09000 * 113.69173 * 89.13523 * 30 17 16 51 51 H 1.08003 * 120.02512 * 0.02562 * 31 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 2.6388 -0.0118 2.1909 6 6 3.1006 -0.6607 3.3213 7 6 2.8564 -2.0092 3.4932 8 6 2.1466 -2.7128 2.5308 9 8 1.9045 -4.0396 2.6978 10 6 2.4099 -4.6463 3.8889 11 6 2.0470 -6.1089 3.9004 12 8 1.4180 -6.5849 2.9793 13 7 2.4224 -6.8882 4.9340 14 6 2.0701 -8.3101 4.9451 15 1 1.1831 -8.5310 4.3513 16 6 3.2575 -9.2412 4.6485 17 6 3.5304 -9.2425 6.1647 18 1 4.1917 -8.4393 6.4898 19 6 3.9347 -10.5900 6.7043 20 6 4.8949 -10.6767 7.6919 21 6 5.2637 -11.9230 8.1939 22 6 6.2915 -12.0219 9.2606 23 7 6.7359 -13.1267 9.8257 24 7 7.6215 -12.7935 10.7005 25 7 7.7466 -11.5124 10.7133 26 7 6.9441 -11.0046 9.8404 27 6 4.6691 -13.0761 7.6872 28 6 3.7139 -12.9784 6.6954 29 6 3.3475 -11.7385 6.2045 30 6 2.0376 -8.9258 6.3539 31 6 1.6795 -2.0583 1.4004 32 1 -0.3932 0.4418 0.7651 33 1 1.7923 -0.5139 -0.8900 34 1 1.5615 2.4679 -1.2085 35 1 1.5881 2.4585 1.2242 36 1 2.8311 1.0426 2.0582 37 1 3.6535 -0.1127 4.0700 38 1 3.2177 -2.5157 4.3761 39 1 3.4943 -4.5403 3.9185 40 1 1.9731 -4.1569 4.7594 41 1 2.9258 -6.5075 5.6706 42 1 2.9619 -10.2147 4.2573 43 1 4.0461 -8.7699 4.0619 44 1 5.3566 -9.7799 8.0777 45 1 8.1139 -13.4110 11.2638 46 1 4.9547 -14.0448 8.0699 47 1 3.2520 -13.8719 6.3020 48 1 2.6000 -11.6666 5.4283 49 1 1.8417 -8.1999 7.1432 50 1 1.4078 -9.8123 6.4286 51 1 1.1233 -2.6028 0.6517 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_280130_17857610_17899772.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 03:30:57 Heat of formation + Delta-G solvation = 109.127605 kcal Electronic energy + Delta-G solvation = -35521.137915 eV Core-core repulsion = 30584.633555 eV Total energy + Delta-G solvation = -4936.504360 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 408.163 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -45.49816 -41.75239 -41.24951 -40.35349 -39.23178 -38.61721 -37.32543 -35.48252 -34.94766 -34.29024 -32.48924 -32.15234 -31.65414 -31.30903 -29.24647 -26.86150 -26.67499 -26.28490 -25.52280 -25.42103 -23.67490 -23.08401 -22.91228 -22.07423 -21.63842 -20.43990 -19.82570 -19.33523 -18.62816 -18.18228 -17.98743 -17.69264 -17.42572 -17.29305 -17.02160 -16.68864 -16.50466 -16.23227 -16.14903 -15.70941 -15.53792 -15.40542 -15.09340 -14.99611 -14.73725 -14.58173 -14.40721 -14.18363 -14.13038 -13.97293 -13.57793 -13.46327 -13.36698 -13.26099 -13.00118 -12.83823 -12.60157 -12.45821 -12.43516 -12.24886 -12.10551 -12.05232 -11.99627 -11.73052 -11.58208 -11.57690 -11.21432 -11.01936 -10.65713 -10.15056 -9.93394 -9.76774 -9.55117 -9.27762 -4.90005 -0.29310 0.14658 0.21622 0.39980 0.40292 1.28273 1.30288 1.38551 1.42441 1.49373 1.62102 1.97354 2.59197 2.64750 2.67464 2.77940 3.13261 3.41605 3.48999 3.52521 3.67392 3.72045 3.75725 3.86050 3.95195 4.01628 4.03162 4.10283 4.10610 4.14008 4.21680 4.25712 4.26689 4.37346 4.39295 4.43886 4.54977 4.58347 4.65759 4.69031 4.82052 4.87485 4.88557 4.99325 5.02943 5.07025 5.09857 5.18209 5.25616 5.38157 5.44290 5.46015 5.47974 5.51475 5.56912 5.68891 5.71474 5.95070 6.28436 6.46980 6.47337 7.07634 7.12754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.551 6.551 2 C -0.095 4.095 3 Si 0.785 3.215 4 C -0.081 4.081 5 C -0.159 4.159 6 C -0.071 4.071 7 C -0.201 4.201 8 C 0.114 3.886 9 O -0.323 6.323 10 C 0.037 3.963 11 C 0.515 3.485 12 O -0.572 6.572 13 N -0.692 5.692 14 C 0.114 3.886 15 H 0.084 0.916 16 C -0.142 4.142 17 C -0.065 4.065 18 H 0.113 0.887 19 C -0.073 4.073 20 C -0.079 4.079 21 C -0.036 4.036 22 C 0.209 3.791 23 N -0.299 5.299 24 N -0.203 5.203 25 N -0.059 5.059 26 N -0.293 5.293 27 C -0.091 4.091 28 C -0.120 4.120 29 C -0.096 4.096 30 C -0.122 4.122 31 C -0.149 4.149 32 H 0.386 0.614 33 H 0.118 0.882 34 H -0.305 1.305 35 H -0.275 1.275 36 H 0.148 0.852 37 H 0.162 0.838 38 H 0.161 0.839 39 H 0.127 0.873 40 H 0.125 0.875 41 H 0.421 0.579 42 H 0.100 0.900 43 H 0.068 0.932 44 H 0.135 0.865 45 H 0.494 0.506 46 H 0.134 0.866 47 H 0.150 0.850 48 H 0.146 0.854 49 H 0.090 0.910 50 H 0.104 0.896 51 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.180 -0.361 6.864 8.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.359 6.359 2 C -0.202 4.202 3 Si 0.689 3.311 4 C -0.082 4.082 5 C -0.176 4.176 6 C -0.088 4.088 7 C -0.220 4.220 8 C 0.069 3.931 9 O -0.237 6.237 10 C -0.040 4.040 11 C 0.301 3.699 12 O -0.450 6.450 13 N -0.346 5.346 14 C 0.008 3.992 15 H 0.102 0.898 16 C -0.181 4.181 17 C -0.083 4.083 18 H 0.132 0.868 19 C -0.073 4.073 20 C -0.099 4.099 21 C -0.039 4.039 22 C -0.071 4.071 23 N -0.152 5.152 24 N -0.054 5.054 25 N -0.054 5.054 26 N -0.166 5.166 27 C -0.111 4.111 28 C -0.137 4.137 29 C -0.115 4.115 30 C -0.160 4.160 31 C -0.168 4.168 32 H 0.235 0.765 33 H 0.136 0.864 34 H -0.234 1.234 35 H -0.201 1.201 36 H 0.165 0.835 37 H 0.180 0.820 38 H 0.179 0.821 39 H 0.144 0.856 40 H 0.143 0.857 41 H 0.260 0.740 42 H 0.119 0.881 43 H 0.087 0.913 44 H 0.153 0.847 45 H 0.352 0.648 46 H 0.152 0.848 47 H 0.168 0.832 48 H 0.164 0.836 49 H 0.109 0.891 50 H 0.122 0.878 51 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 4.971 -0.091 6.014 7.803 hybrid contribution -0.838 -1.003 0.846 1.557 sum 4.133 -1.094 6.859 8.083 Atomic orbital electron populations 1.86586 1.18658 1.80565 1.50109 1.25463 0.83460 1.12874 0.98433 0.93849 0.90020 0.70763 0.76461 1.20112 0.98171 0.92960 0.96908 1.21247 1.00711 1.00834 0.94850 1.21324 0.96834 0.93537 0.97147 1.21638 1.03502 0.96330 1.00511 1.19194 0.96228 0.82319 0.95362 1.86125 1.74667 1.20858 1.42011 1.22734 1.02657 0.90083 0.88544 1.20537 0.78692 0.88515 0.82109 1.90767 1.41004 1.75993 1.37264 1.45354 1.57294 1.08915 1.23001 1.21880 0.98445 0.79697 0.99130 0.89810 1.23627 0.98100 1.00590 0.95765 1.21653 0.97312 0.93991 0.95350 0.86845 1.19707 0.95938 0.95725 0.95944 1.21140 0.96540 0.96368 0.95857 1.17389 0.95867 0.95602 0.95081 1.24020 0.99469 0.84326 0.99287 1.74899 1.07378 1.26583 1.06307 1.47817 1.25421 1.06609 1.25522 1.78880 1.17303 0.93298 1.15914 1.76056 1.07067 1.26863 1.06572 1.21311 0.95874 0.97558 0.96378 1.21357 0.97071 0.99000 0.96314 1.21486 0.99136 0.91664 0.99182 1.23378 0.95461 1.01823 0.95358 1.20311 1.04159 0.94605 0.97769 0.76451 0.86387 1.23376 1.20083 0.83529 0.82045 0.82148 0.85566 0.85727 0.74049 0.88132 0.91340 0.84677 0.64764 0.84781 0.83233 0.83610 0.89126 0.87752 0.86997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -3.09 12.83 -148.98 -1.91 -5.00 16 2 C -0.09 -0.17 2.80 71.24 0.20 0.03 16 3 Si 0.78 -1.42 29.88 68.60 2.05 0.63 16 4 C -0.08 -0.18 5.35 -19.88 -0.11 -0.29 16 5 C -0.16 0.32 8.67 22.28 0.19 0.51 16 6 C -0.07 0.30 10.04 22.25 0.22 0.52 16 7 C -0.20 0.55 9.04 22.36 0.20 0.75 16 8 C 0.11 0.49 6.69 22.51 0.15 0.64 16 9 O -0.32 -2.24 9.67 -73.40 -0.71 -2.95 16 10 C 0.04 -0.12 5.22 71.24 0.37 0.25 16 11 C 0.52 1.24 7.91 87.66 0.69 1.94 16 12 O -0.57 -8.30 16.12 16.01 0.26 -8.04 16 13 N -0.69 3.59 5.26 -440.04 -2.32 1.27 16 14 C 0.11 -0.41 4.29 45.52 0.20 -0.22 16 15 H 0.08 0.14 7.50 -2.38 -0.02 0.12 16 16 C -0.14 0.66 7.27 31.21 0.23 0.88 16 17 C -0.06 0.45 3.87 -10.93 -0.04 0.40 16 18 H 0.11 -1.05 8.09 -2.38 -0.02 -1.07 16 19 C -0.07 0.24 5.28 -19.90 -0.11 0.14 16 20 C -0.08 -0.01 9.36 22.48 0.21 0.20 16 21 C -0.04 -0.10 5.88 -20.04 -0.12 -0.21 16 22 C 0.21 1.10 7.94 137.38 1.09 2.19 16 23 N -0.30 -0.85 12.08 -52.13 -0.63 -1.48 16 24 N -0.20 0.28 7.90 37.02 0.29 0.57 16 25 N -0.06 -0.25 13.47 37.02 0.50 0.25 16 26 N -0.29 -2.08 12.23 -52.18 -0.64 -2.72 16 27 C -0.09 -0.01 9.70 22.47 0.22 0.21 16 28 C -0.12 0.38 10.03 22.24 0.22 0.60 16 29 C -0.10 0.39 8.61 22.31 0.19 0.59 16 30 C -0.12 0.94 7.28 31.12 0.23 1.17 16 31 C -0.15 -0.99 9.62 22.37 0.22 -0.77 16 32 H 0.39 -0.25 8.70 -74.05 -0.64 -0.89 16 33 H 0.12 0.15 7.96 -2.38 -0.02 0.14 16 34 H -0.31 -1.90 7.11 99.48 0.71 -1.19 16 35 H -0.27 -0.16 7.01 99.48 0.70 0.54 16 36 H 0.15 -0.89 4.84 -2.91 -0.01 -0.90 16 37 H 0.16 -1.67 8.06 -2.91 -0.02 -1.70 16 38 H 0.16 -1.56 6.30 -2.91 -0.02 -1.58 16 39 H 0.13 -1.23 7.66 -2.39 -0.02 -1.24 16 40 H 0.13 -1.19 7.66 -2.39 -0.02 -1.21 16 41 H 0.42 -5.32 8.70 -92.71 -0.81 -6.13 16 42 H 0.10 -0.53 6.31 -2.39 -0.02 -0.54 16 43 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 44 H 0.14 -0.09 7.88 -2.91 -0.02 -0.11 16 45 H 0.49 -5.35 8.96 -347.54 -3.12 -8.46 16 46 H 0.13 -0.14 7.88 -2.91 -0.02 -0.16 16 47 H 0.15 -1.08 8.06 -2.91 -0.02 -1.11 16 48 H 0.15 -1.13 6.65 -2.91 -0.02 -1.15 16 49 H 0.09 -0.85 8.14 -2.39 -0.02 -0.87 16 50 H 0.10 -0.82 7.73 -2.39 -0.02 -0.84 16 51 H 0.11 1.12 8.06 -2.91 -0.02 1.10 16 Total: 0.00 -33.27 431.69 -2.14 -35.41 By element: Atomic # 1 Polarization: -23.97 SS G_CDS: -3.50 Total: -27.46 kcal Atomic # 6 Polarization: 5.07 SS G_CDS: 4.46 Total: 9.53 kcal Atomic # 7 Polarization: 0.68 SS G_CDS: -2.79 Total: -2.12 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: -2.36 Total: -15.99 kcal Atomic # 14 Polarization: -1.42 SS G_CDS: 2.05 Total: 0.63 kcal Total: -33.27 -2.14 -35.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_280130_17857610_17899772.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.541 kcal (2) G-P(sol) polarization free energy of solvation -33.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds