Wall clock time and date at job start Sat Mar 6 2021 03:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86305 * 109.46948 * 2 1 4 4 C 1.50704 * 109.46956 * 240.00139 * 2 1 3 5 5 C 1.32771 * 124.71347 * 300.27140 * 4 2 1 6 6 C 1.44420 * 113.08192 * 180.18263 * 5 4 2 7 7 C 1.47193 * 123.45894 * 179.80587 * 6 5 4 8 8 O 1.21640 * 120.00028 * 359.73166 * 7 6 5 9 9 N 1.34771 * 119.99891 * 179.72746 * 7 6 5 10 10 C 1.46504 * 120.00199 * 180.02562 * 9 7 6 11 11 H 1.08999 * 112.84535 * 23.80636 * 10 9 7 12 12 C 1.53783 * 113.61642 * 154.99790 * 10 9 7 13 13 C 1.53783 * 87.07831 * 89.11969 * 12 10 9 14 14 H 1.08995 * 113.61379 * 270.79911 * 13 12 10 15 15 C 1.50699 * 113.61424 * 139.98010 * 13 12 10 16 16 C 1.38004 * 119.93841 * 120.02266 * 15 13 12 17 17 C 1.39329 * 119.87784 * 180.02562 * 16 15 13 18 18 C 1.48469 * 120.11506 * 179.97438 * 17 16 15 19 19 N 1.31810 * 126.67470 * 179.97438 * 18 17 16 20 20 N 1.28866 * 107.82093 * 180.02562 * 19 18 17 21 21 N 1.28735 * 109.31668 * 359.97438 * 20 19 18 22 22 N 1.28987 * 108.94013 * 359.72617 * 21 20 19 23 23 C 1.39271 * 119.76763 * 359.97403 * 17 16 15 24 24 C 1.38055 * 119.88127 * 0.02562 * 23 17 16 25 25 C 1.38291 * 120.11393 * 0.02562 * 24 23 17 26 26 C 1.53775 * 113.61493 * 252.50252 * 10 9 7 27 27 C 1.36010 * 113.08202 * 359.54216 * 6 5 4 28 28 S 1.70447 * 110.81270 * 0.24336 * 27 6 5 29 29 H 0.96704 * 114.00404 * 59.99880 * 1 2 3 30 30 H 1.08997 * 109.47415 * 119.99899 * 2 1 3 31 31 H 1.48502 * 109.99973 * 298.68166 * 3 2 1 32 32 H 1.48490 * 109.99977 * 60.00149 * 3 2 1 33 33 H 1.07994 * 123.45347 * 359.97438 * 5 4 2 34 34 H 0.97006 * 120.00563 * 359.97438 * 9 7 6 35 35 H 1.08992 * 113.61511 * 334.57129 * 12 10 9 36 36 H 1.08997 * 113.61325 * 203.66442 * 12 10 9 37 37 H 1.08000 * 120.06268 * 359.97438 * 16 15 13 38 38 H 0.97001 * 125.34481 * 180.02562 * 20 19 18 39 39 H 1.08001 * 120.06052 * 180.27950 * 23 17 16 40 40 H 1.07997 * 119.94171 * 179.97438 * 24 23 17 41 41 H 1.08006 * 119.87891 * 179.97438 * 25 24 23 42 42 H 1.09005 * 113.61829 * 156.33690 * 26 10 9 43 43 H 1.08992 * 113.61550 * 25.42519 * 26 10 9 44 44 H 1.07997 * 124.59417 * 180.28921 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 1.6646 -1.9748 -1.5354 6 6 2.2779 -2.4006 -2.7717 7 6 2.1355 -3.7580 -3.3228 8 8 1.4772 -4.5900 -2.7279 9 7 2.7345 -4.0790 -4.4866 10 6 2.5924 -5.4298 -5.0356 11 1 1.6972 -5.9394 -4.6792 12 6 2.7734 -5.4971 -6.5612 13 6 4.2736 -5.7055 -6.2951 14 1 4.8392 -4.7759 -6.2325 15 6 4.9135 -6.7195 -7.2080 16 6 5.9563 -6.3446 -8.0305 17 6 6.5466 -7.2830 -8.8744 18 6 7.6684 -6.8853 -9.7618 19 7 8.3180 -7.6619 -10.6058 20 7 9.2183 -6.9463 -11.1872 21 7 9.1594 -5.7410 -10.7389 22 7 8.2136 -5.6651 -9.8651 23 6 6.0806 -8.5955 -8.8825 24 6 5.0368 -8.9599 -8.0557 25 6 4.4538 -8.0242 -7.2208 26 6 3.8709 -6.2772 -4.9254 27 6 2.9958 -1.4169 -3.3772 28 16 2.9440 0.0209 -2.4633 29 1 -0.3934 0.4417 -0.7650 30 1 1.7923 -0.5138 0.8900 31 1 1.5878 2.4586 -1.2242 32 1 1.5615 2.4679 1.2084 33 1 1.0546 -2.6196 -0.9203 34 1 3.2592 -3.4154 -4.9614 35 1 2.5462 -4.5601 -7.0695 36 1 2.2878 -6.3578 -7.0210 37 1 6.3136 -5.3255 -8.0206 38 1 9.8420 -7.2656 -11.8580 39 1 6.5376 -9.3278 -9.5315 40 1 4.6744 -9.9772 -8.0615 41 1 3.6372 -8.3133 -6.5758 42 1 3.6854 -7.3512 -4.9380 43 1 4.5297 -5.9699 -4.1133 44 1 3.5262 -1.5311 -4.3110 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_280130_17857610_17900784.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 03:31:03 Heat of formation + Delta-G solvation = 146.972293 kcal Electronic energy + Delta-G solvation = -30382.291857 eV Core-core repulsion = 26010.800624 eV Total energy + Delta-G solvation = -4371.491234 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 384.104 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -45.41935 -41.68778 -40.54933 -39.25592 -38.57512 -37.11055 -35.41271 -34.87844 -34.23148 -32.27789 -31.70664 -31.19754 -27.02928 -26.82266 -26.79154 -25.84760 -25.46192 -24.99891 -23.10721 -22.40210 -21.99750 -20.56195 -20.46092 -19.88227 -18.94429 -18.32812 -18.10195 -17.87687 -17.66339 -16.95167 -16.58218 -16.44428 -16.29019 -15.94885 -15.68936 -15.50890 -15.31300 -15.01931 -14.68733 -14.53274 -14.41857 -14.21970 -14.04387 -13.77663 -13.58542 -13.55584 -13.35185 -13.27934 -12.89868 -12.68630 -12.53551 -12.40032 -12.35088 -12.16090 -12.05123 -11.85813 -11.80754 -11.64440 -11.31463 -10.94144 -10.75754 -10.14450 -10.00296 -9.82953 -9.60733 -9.51658 -5.13678 -0.37916 -0.29129 0.22023 0.32424 0.32748 0.67293 0.89220 1.17264 1.27562 1.36153 1.50103 1.85296 2.05049 2.34782 2.67380 2.72332 3.18945 3.22997 3.35943 3.52250 3.60780 3.65118 3.80449 3.82697 3.91243 3.95307 4.04405 4.10568 4.20222 4.26588 4.37962 4.42944 4.45110 4.53328 4.60174 4.64344 4.69880 4.77455 4.78818 4.90347 4.94628 5.00107 5.01632 5.08239 5.21286 5.34160 5.40941 5.44441 5.48118 5.60269 5.85459 6.28362 6.43688 7.17073 7.20758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.522 6.522 2 C -0.032 4.032 3 Si 0.650 3.350 4 C -0.242 4.242 5 C -0.053 4.053 6 C -0.156 4.156 7 C 0.581 3.419 8 O -0.529 6.529 9 N -0.709 5.709 10 C 0.120 3.880 11 H 0.108 0.892 12 C -0.136 4.136 13 C -0.073 4.073 14 H 0.100 0.900 15 C -0.073 4.073 16 C -0.072 4.072 17 C -0.016 4.016 18 C 0.217 3.783 19 N -0.293 5.293 20 N -0.226 5.226 21 N -0.046 5.046 22 N -0.269 5.269 23 C -0.083 4.083 24 C -0.118 4.118 25 C -0.095 4.095 26 C -0.144 4.144 27 C -0.206 4.206 28 S 0.199 5.801 29 H 0.378 0.622 30 H 0.128 0.872 31 H -0.239 1.239 32 H -0.234 1.234 33 H 0.157 0.843 34 H 0.400 0.600 35 H 0.078 0.922 36 H 0.100 0.900 37 H 0.135 0.865 38 H 0.477 0.523 39 H 0.133 0.867 40 H 0.132 0.868 41 H 0.130 0.870 42 H 0.097 0.903 43 H 0.076 0.924 44 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.559 0.705 -3.257 4.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.329 6.329 2 C -0.145 4.145 3 Si 0.548 3.452 4 C -0.359 4.359 5 C -0.082 4.082 6 C -0.174 4.174 7 C 0.367 3.633 8 O -0.406 6.406 9 N -0.361 5.361 10 C 0.015 3.985 11 H 0.126 0.874 12 C -0.174 4.174 13 C -0.091 4.091 14 H 0.118 0.882 15 C -0.073 4.073 16 C -0.092 4.092 17 C -0.020 4.020 18 C -0.062 4.062 19 N -0.145 5.145 20 N -0.072 5.072 21 N -0.041 5.041 22 N -0.142 5.142 23 C -0.103 4.103 24 C -0.136 4.136 25 C -0.114 4.114 26 C -0.182 4.182 27 C -0.344 4.344 28 S 0.466 5.534 29 H 0.226 0.774 30 H 0.146 0.854 31 H -0.163 1.163 32 H -0.157 1.157 33 H 0.174 0.826 34 H 0.235 0.765 35 H 0.096 0.904 36 H 0.119 0.881 37 H 0.153 0.847 38 H 0.332 0.668 39 H 0.150 0.850 40 H 0.150 0.850 41 H 0.147 0.853 42 H 0.115 0.885 43 H 0.095 0.905 44 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 4.022 2.523 -2.733 5.478 hybrid contribution -0.985 -1.921 -1.163 2.452 sum 3.038 0.602 -3.896 4.977 Atomic orbital electron populations 1.86645 1.17144 1.79850 1.49235 1.24407 0.83875 1.09994 0.96188 0.95321 0.91674 0.75032 0.83128 1.24753 1.08621 0.99174 1.03358 1.21044 0.98139 0.94376 0.94677 1.20235 1.04531 0.94629 0.98022 1.17602 0.78751 0.86549 0.80377 1.90829 1.40076 1.50410 1.59295 1.45505 1.53519 1.13425 1.23624 1.21861 0.99637 0.83043 0.93994 0.87437 1.23445 0.95026 1.03654 0.95228 1.21609 0.95506 0.97578 0.94453 0.88219 1.19574 0.95974 0.94533 0.97230 1.21055 0.94756 0.99433 0.93937 1.17203 0.93442 0.94612 0.96713 1.23730 0.98611 0.86714 0.97189 1.74925 1.04200 1.24018 1.11311 1.47763 1.24404 1.05223 1.29795 1.78955 1.14590 1.03166 1.07425 1.76089 1.04915 1.20545 1.12629 1.21195 0.96145 0.94570 0.98401 1.21104 0.96238 1.00074 0.96143 1.21223 0.99449 0.92569 0.98142 1.23583 0.97426 1.00628 0.96580 1.25807 1.04476 0.98899 1.05235 1.83125 1.46536 1.11175 1.12611 0.77417 0.85416 1.16297 1.15691 0.82575 0.76535 0.90372 0.88136 0.84725 0.66829 0.84956 0.85020 0.85256 0.88452 0.90502 0.81124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.52 -0.48 12.85 -35.23 -0.45 -0.93 16 2 C -0.03 0.02 2.95 36.01 0.11 0.13 16 3 Si 0.65 -1.01 30.91 -169.99 -5.25 -6.27 16 4 C -0.24 0.06 5.69 -36.18 -0.21 -0.14 16 5 C -0.05 -0.08 9.91 -39.02 -0.39 -0.46 16 6 C -0.16 -0.14 5.98 -104.63 -0.63 -0.77 16 7 C 0.58 1.35 7.79 -12.63 -0.10 1.26 16 8 O -0.53 -3.35 16.40 5.24 0.09 -3.26 16 9 N -0.71 0.62 5.23 -54.16 -0.28 0.34 16 10 C 0.12 -0.13 4.32 -67.12 -0.29 -0.42 16 11 H 0.11 0.07 7.46 -51.93 -0.39 -0.32 16 12 C -0.14 0.36 7.29 -25.92 -0.19 0.17 16 13 C -0.07 0.17 3.85 -90.96 -0.35 -0.18 16 14 H 0.10 -0.31 8.09 -51.93 -0.42 -0.73 16 15 C -0.07 0.07 5.28 -104.67 -0.55 -0.48 16 16 C -0.07 -0.02 9.36 -39.26 -0.37 -0.39 16 17 C -0.02 -0.02 5.88 -104.89 -0.62 -0.64 16 18 C 0.22 0.55 7.94 -156.31 -1.24 -0.69 16 19 N -0.29 -0.42 12.08 32.17 0.39 -0.03 16 20 N -0.23 0.13 7.90 60.35 0.48 0.61 16 21 N -0.05 -0.10 13.47 60.35 0.81 0.72 16 22 N -0.27 -0.92 12.23 32.16 0.39 -0.52 16 23 C -0.08 -0.01 9.70 -39.26 -0.38 -0.39 16 24 C -0.12 0.13 10.03 -39.63 -0.40 -0.27 16 25 C -0.10 0.13 8.60 -39.53 -0.34 -0.21 16 26 C -0.14 0.24 7.25 -25.92 -0.19 0.05 16 27 C -0.21 0.36 10.38 29.93 0.31 0.67 16 28 S 0.20 -0.38 20.18 -107.50 -2.17 -2.55 16 29 H 0.38 -0.76 8.70 45.56 0.40 -0.36 16 30 H 0.13 -0.18 7.96 -51.93 -0.41 -0.59 16 31 H -0.24 0.01 7.11 56.52 0.40 0.41 16 32 H -0.23 -0.32 7.11 56.52 0.40 0.09 16 33 H 0.16 0.39 8.06 -52.49 -0.42 -0.03 16 34 H 0.40 -1.40 7.20 -40.82 -0.29 -1.69 16 35 H 0.08 -0.23 8.14 -51.93 -0.42 -0.65 16 36 H 0.10 -0.29 7.72 -51.93 -0.40 -0.69 16 37 H 0.13 -0.01 7.88 -52.49 -0.41 -0.43 16 38 H 0.48 -2.48 8.96 -340.37 -3.05 -5.53 16 39 H 0.13 -0.07 7.88 -52.49 -0.41 -0.49 16 40 H 0.13 -0.39 8.06 -52.49 -0.42 -0.81 16 41 H 0.13 -0.39 6.65 -52.48 -0.35 -0.74 16 42 H 0.10 -0.21 6.31 -51.93 -0.33 -0.54 16 43 H 0.08 -0.05 8.14 -51.93 -0.42 -0.48 16 44 H 0.17 -0.80 7.01 -52.49 -0.37 -1.16 16 LS Contribution 391.89 15.07 5.91 5.91 Total: 0.00 -10.26 391.89 -13.24 -23.50 By element: Atomic # 1 Polarization: -7.40 SS G_CDS: -7.33 Total: -14.73 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: -5.81 Total: -2.78 kcal Atomic # 7 Polarization: -0.68 SS G_CDS: 1.79 Total: 1.11 kcal Atomic # 8 Polarization: -3.83 SS G_CDS: -0.37 Total: -4.20 kcal Atomic # 14 Polarization: -1.01 SS G_CDS: -5.25 Total: -6.27 kcal Atomic # 16 Polarization: -0.38 SS G_CDS: -2.17 Total: -2.55 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -10.26 -13.24 -23.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_280130_17857610_17900784.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.476 kcal (2) G-P(sol) polarization free energy of solvation -10.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 160.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 146.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds