Wall clock time and date at job start Sat Mar 6 2021 03:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86305 * 109.46948 * 2 1 4 4 C 1.50704 * 109.46956 * 240.00139 * 2 1 3 5 5 C 1.32771 * 124.71347 * 300.27140 * 4 2 1 6 6 C 1.44420 * 113.08192 * 180.18263 * 5 4 2 7 7 C 1.47193 * 123.45894 * 179.80587 * 6 5 4 8 8 O 1.21640 * 120.00028 * 359.73166 * 7 6 5 9 9 N 1.34771 * 119.99891 * 179.72746 * 7 6 5 10 10 C 1.46504 * 120.00199 * 180.02562 * 9 7 6 11 11 H 1.08999 * 112.84535 * 23.80636 * 10 9 7 12 12 C 1.53783 * 113.61642 * 154.99790 * 10 9 7 13 13 C 1.53783 * 87.07831 * 89.11969 * 12 10 9 14 14 H 1.08995 * 113.61379 * 270.79911 * 13 12 10 15 15 C 1.50699 * 113.61424 * 139.98010 * 13 12 10 16 16 C 1.38004 * 119.93841 * 120.02266 * 15 13 12 17 17 C 1.39329 * 119.87784 * 180.02562 * 16 15 13 18 18 C 1.48469 * 120.11506 * 179.97438 * 17 16 15 19 19 N 1.31810 * 126.67470 * 179.97438 * 18 17 16 20 20 N 1.28866 * 107.82093 * 180.02562 * 19 18 17 21 21 N 1.28735 * 109.31668 * 359.97438 * 20 19 18 22 22 N 1.28987 * 108.94013 * 359.72617 * 21 20 19 23 23 C 1.39271 * 119.76763 * 359.97403 * 17 16 15 24 24 C 1.38055 * 119.88127 * 0.02562 * 23 17 16 25 25 C 1.38291 * 120.11393 * 0.02562 * 24 23 17 26 26 C 1.53775 * 113.61493 * 252.50252 * 10 9 7 27 27 C 1.36010 * 113.08202 * 359.54216 * 6 5 4 28 28 S 1.70447 * 110.81270 * 0.24336 * 27 6 5 29 29 H 0.96704 * 114.00404 * 59.99880 * 1 2 3 30 30 H 1.08997 * 109.47415 * 119.99899 * 2 1 3 31 31 H 1.48502 * 109.99973 * 298.68166 * 3 2 1 32 32 H 1.48490 * 109.99977 * 60.00149 * 3 2 1 33 33 H 1.07994 * 123.45347 * 359.97438 * 5 4 2 34 34 H 0.97006 * 120.00563 * 359.97438 * 9 7 6 35 35 H 1.08992 * 113.61511 * 334.57129 * 12 10 9 36 36 H 1.08997 * 113.61325 * 203.66442 * 12 10 9 37 37 H 1.08000 * 120.06268 * 359.97438 * 16 15 13 38 38 H 0.97001 * 125.34481 * 180.02562 * 20 19 18 39 39 H 1.08001 * 120.06052 * 180.27950 * 23 17 16 40 40 H 1.07997 * 119.94171 * 179.97438 * 24 23 17 41 41 H 1.08006 * 119.87891 * 179.97438 * 25 24 23 42 42 H 1.09005 * 113.61829 * 156.33690 * 26 10 9 43 43 H 1.08992 * 113.61550 * 25.42519 * 26 10 9 44 44 H 1.07997 * 124.59417 * 180.28921 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 1.6646 -1.9748 -1.5354 6 6 2.2779 -2.4006 -2.7717 7 6 2.1355 -3.7580 -3.3228 8 8 1.4772 -4.5900 -2.7279 9 7 2.7345 -4.0790 -4.4866 10 6 2.5924 -5.4298 -5.0356 11 1 1.6972 -5.9394 -4.6792 12 6 2.7734 -5.4971 -6.5612 13 6 4.2736 -5.7055 -6.2951 14 1 4.8392 -4.7759 -6.2325 15 6 4.9135 -6.7195 -7.2080 16 6 5.9563 -6.3446 -8.0305 17 6 6.5466 -7.2830 -8.8744 18 6 7.6684 -6.8853 -9.7618 19 7 8.3180 -7.6619 -10.6058 20 7 9.2183 -6.9463 -11.1872 21 7 9.1594 -5.7410 -10.7389 22 7 8.2136 -5.6651 -9.8651 23 6 6.0806 -8.5955 -8.8825 24 6 5.0368 -8.9599 -8.0557 25 6 4.4538 -8.0242 -7.2208 26 6 3.8709 -6.2772 -4.9254 27 6 2.9958 -1.4169 -3.3772 28 16 2.9440 0.0209 -2.4633 29 1 -0.3934 0.4417 -0.7650 30 1 1.7923 -0.5138 0.8900 31 1 1.5878 2.4586 -1.2242 32 1 1.5615 2.4679 1.2084 33 1 1.0546 -2.6196 -0.9203 34 1 3.2592 -3.4154 -4.9614 35 1 2.5462 -4.5601 -7.0695 36 1 2.2878 -6.3578 -7.0210 37 1 6.3136 -5.3255 -8.0206 38 1 9.8420 -7.2656 -11.8580 39 1 6.5376 -9.3278 -9.5315 40 1 4.6744 -9.9772 -8.0615 41 1 3.6372 -8.3133 -6.5758 42 1 3.6854 -7.3512 -4.9380 43 1 4.5297 -5.9699 -4.1133 44 1 3.5262 -1.5311 -4.3110 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_280130_17857610_17900784.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 03:31:02 Heat of formation + Delta-G solvation = 146.234678 kcal Electronic energy + Delta-G solvation = -30382.323843 eV Core-core repulsion = 26010.800624 eV Total energy + Delta-G solvation = -4371.523219 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 384.104 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -45.49512 -41.65050 -40.55867 -39.20500 -38.60434 -37.15318 -35.47966 -34.93801 -34.27769 -32.22028 -31.67195 -31.16133 -26.99713 -26.75316 -26.67060 -25.86913 -25.50634 -24.97981 -23.06185 -22.37711 -22.00735 -20.57418 -20.45062 -19.84831 -18.88466 -18.31226 -18.17895 -17.83946 -17.66015 -16.88734 -16.51729 -16.43930 -16.24146 -16.02343 -15.70641 -15.51102 -15.26110 -15.06105 -14.64996 -14.48014 -14.38969 -14.17088 -14.03306 -13.72691 -13.58047 -13.46232 -13.37050 -13.26330 -12.82977 -12.63579 -12.45233 -12.43095 -12.42127 -12.24291 -12.05592 -11.86259 -11.70866 -11.57071 -11.21067 -11.04835 -10.76388 -10.18030 -9.95467 -9.76481 -9.55138 -9.42726 -5.04100 -0.32281 -0.28951 0.14993 0.40234 0.41063 0.71726 0.82971 1.23778 1.30566 1.38986 1.57089 1.91438 2.07858 2.26375 2.64947 2.78343 3.13505 3.30935 3.49154 3.60721 3.72809 3.75294 3.91647 3.95632 4.00413 4.04338 4.10766 4.21963 4.26371 4.30131 4.39538 4.44182 4.51488 4.58658 4.69341 4.73061 4.81896 4.87842 4.88747 5.01685 5.03712 5.07077 5.09951 5.18135 5.20086 5.44611 5.48645 5.53853 5.57443 5.70184 5.95358 6.41072 6.47591 7.07929 7.16223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.545 6.545 2 C -0.046 4.046 3 Si 0.730 3.270 4 C -0.247 4.247 5 C -0.076 4.076 6 C -0.183 4.183 7 C 0.578 3.422 8 O -0.583 6.583 9 N -0.694 5.694 10 C 0.113 3.887 11 H 0.086 0.914 12 C -0.124 4.124 13 C -0.065 4.065 14 H 0.111 0.889 15 C -0.073 4.073 16 C -0.079 4.079 17 C -0.035 4.035 18 C 0.208 3.792 19 N -0.299 5.299 20 N -0.203 5.203 21 N -0.059 5.059 22 N -0.294 5.294 23 C -0.091 4.091 24 C -0.119 4.119 25 C -0.096 4.096 26 C -0.141 4.141 27 C -0.190 4.190 28 S 0.250 5.750 29 H 0.388 0.612 30 H 0.130 0.870 31 H -0.252 1.252 32 H -0.276 1.276 33 H 0.132 0.868 34 H 0.414 0.586 35 H 0.087 0.913 36 H 0.106 0.894 37 H 0.135 0.865 38 H 0.494 0.506 39 H 0.135 0.865 40 H 0.151 0.849 41 H 0.147 0.853 42 H 0.103 0.897 43 H 0.067 0.933 44 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.535 1.388 -4.561 6.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.353 6.353 2 C -0.157 4.157 3 Si 0.630 3.370 4 C -0.363 4.363 5 C -0.105 4.105 6 C -0.201 4.201 7 C 0.365 3.635 8 O -0.464 6.464 9 N -0.345 5.345 10 C 0.007 3.993 11 H 0.105 0.895 12 C -0.161 4.161 13 C -0.083 4.083 14 H 0.129 0.871 15 C -0.073 4.073 16 C -0.099 4.099 17 C -0.039 4.039 18 C -0.072 4.072 19 N -0.151 5.151 20 N -0.053 5.053 21 N -0.054 5.054 22 N -0.166 5.166 23 C -0.111 4.111 24 C -0.137 4.137 25 C -0.114 4.114 26 C -0.179 4.179 27 C -0.328 4.328 28 S 0.517 5.483 29 H 0.238 0.762 30 H 0.147 0.853 31 H -0.177 1.177 32 H -0.202 1.202 33 H 0.150 0.850 34 H 0.252 0.748 35 H 0.106 0.894 36 H 0.124 0.876 37 H 0.152 0.848 38 H 0.353 0.647 39 H 0.153 0.847 40 H 0.168 0.832 41 H 0.164 0.836 42 H 0.121 0.879 43 H 0.086 0.914 44 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 5.041 3.205 -4.094 7.242 hybrid contribution -1.277 -2.131 -0.766 2.600 sum 3.764 1.074 -4.860 6.240 Atomic orbital electron populations 1.86610 1.18210 1.80381 1.50105 1.24728 0.83275 1.11325 0.96369 0.94462 0.90315 0.72218 0.79967 1.24832 1.08752 0.98792 1.03971 1.20971 0.99110 0.95002 0.95429 1.20094 1.06673 0.94714 0.98612 1.17891 0.78172 0.86719 0.80694 1.90794 1.42680 1.51964 1.60959 1.45391 1.52590 1.13901 1.22616 1.21901 0.99181 0.82931 0.95257 0.89536 1.23398 0.94629 1.04403 0.93714 1.21590 0.95658 0.97623 0.93443 0.87134 1.19697 0.95566 0.95050 0.96999 1.21130 0.95203 0.99388 0.94230 1.17379 0.93771 0.95391 0.97335 1.24027 0.99023 0.86590 0.97530 1.74895 1.04570 1.24170 1.11468 1.47818 1.23853 1.04440 1.29235 1.78881 1.14719 1.04055 1.07737 1.76055 1.05686 1.21320 1.13529 1.21314 0.96638 0.94260 0.98870 1.21361 0.95666 1.01095 0.95564 1.21485 0.99613 0.92356 0.97982 1.23574 0.96703 1.00919 0.96740 1.26188 1.02645 0.98140 1.05825 1.82966 1.44634 1.09888 1.10827 0.76222 0.85266 1.17658 1.20207 0.85033 0.74773 0.89441 0.87579 0.84757 0.64748 0.84735 0.83153 0.83562 0.87894 0.91439 0.77854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -1.68 12.85 -148.98 -1.91 -3.59 16 2 C -0.05 0.03 2.95 71.24 0.21 0.24 16 3 Si 0.73 -2.51 30.91 68.60 2.12 -0.39 16 4 C -0.25 0.03 5.69 24.51 0.14 0.17 16 5 C -0.08 -0.35 9.91 22.67 0.22 -0.13 16 6 C -0.18 -0.44 5.98 -19.87 -0.12 -0.56 16 7 C 0.58 3.46 7.79 86.60 0.67 4.13 16 8 O -0.58 -9.04 16.40 -4.16 -0.07 -9.11 16 9 N -0.69 1.22 5.23 -443.52 -2.32 -1.10 16 10 C 0.11 -0.21 4.32 45.52 0.20 -0.02 16 11 H 0.09 0.25 7.46 -2.39 -0.02 0.23 16 12 C -0.12 0.77 7.29 31.12 0.23 1.00 16 13 C -0.06 0.37 3.85 -11.01 -0.04 0.33 16 14 H 0.11 -0.85 8.09 -2.39 -0.02 -0.87 16 15 C -0.07 0.19 5.28 -19.90 -0.11 0.09 16 16 C -0.08 -0.05 9.36 22.48 0.21 0.16 16 17 C -0.04 -0.11 5.88 -20.04 -0.12 -0.22 16 18 C 0.21 1.16 7.94 137.38 1.09 2.25 16 19 N -0.30 -0.90 12.08 -52.13 -0.63 -1.53 16 20 N -0.20 0.25 7.90 37.02 0.29 0.54 16 21 N -0.06 -0.26 13.47 37.02 0.50 0.24 16 22 N -0.29 -2.18 12.23 -52.18 -0.64 -2.82 16 23 C -0.09 -0.02 9.70 22.47 0.22 0.19 16 24 C -0.12 0.35 10.03 22.24 0.22 0.57 16 25 C -0.10 0.36 8.60 22.30 0.19 0.55 16 26 C -0.14 0.49 7.25 31.12 0.23 0.72 16 27 C -0.19 0.94 10.38 67.30 0.70 1.64 16 28 S 0.25 -1.37 20.18 -56.49 -1.14 -2.51 16 29 H 0.39 -1.19 8.70 -74.05 -0.64 -1.84 16 30 H 0.13 -0.21 7.96 -2.39 -0.02 -0.23 16 31 H -0.25 0.33 7.11 99.48 0.71 1.04 16 32 H -0.28 -0.99 7.11 99.48 0.71 -0.29 16 33 H 0.13 1.16 8.06 -2.91 -0.02 1.14 16 34 H 0.41 -3.46 7.20 -92.70 -0.67 -4.13 16 35 H 0.09 -0.66 8.14 -2.39 -0.02 -0.68 16 36 H 0.11 -0.74 7.72 -2.39 -0.02 -0.75 16 37 H 0.13 0.00 7.88 -2.91 -0.02 -0.02 16 38 H 0.49 -5.30 8.96 -347.54 -3.12 -8.42 16 39 H 0.13 -0.13 7.88 -2.91 -0.02 -0.15 16 40 H 0.15 -1.08 8.06 -2.91 -0.02 -1.10 16 41 H 0.15 -1.09 6.65 -2.91 -0.02 -1.11 16 42 H 0.10 -0.48 6.31 -2.38 -0.02 -0.50 16 43 H 0.07 -0.08 8.14 -2.39 -0.02 -0.10 16 44 H 0.20 -2.53 7.01 -2.91 -0.02 -2.55 16 Total: 0.00 -26.56 391.89 -2.93 -29.49 By element: Atomic # 1 Polarization: -17.05 SS G_CDS: -3.27 Total: -20.33 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: 4.15 Total: 11.11 kcal Atomic # 7 Polarization: -1.87 SS G_CDS: -2.80 Total: -4.67 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: -1.98 Total: -12.70 kcal Atomic # 14 Polarization: -2.51 SS G_CDS: 2.12 Total: -0.39 kcal Atomic # 16 Polarization: -1.37 SS G_CDS: -1.14 Total: -2.51 kcal Total: -26.56 -2.93 -29.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_280130_17857610_17900784.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.720 kcal (2) G-P(sol) polarization free energy of solvation -26.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 146.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds