Wall clock time and date at job start Sat Mar 6 2021 03:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86303 * 109.47386 * 2 1 4 4 C 1.50704 * 109.47162 * 119.99883 * 2 1 3 5 5 C 1.35449 * 125.56517 * 245.04372 * 4 2 1 6 6 C 1.39836 * 107.86305 * 179.70526 * 5 4 2 7 7 C 1.37874 * 107.08599 * 0.41307 * 6 5 4 8 8 C 1.46676 * 126.23428 * 179.85038 * 7 6 5 9 9 O 1.21699 * 120.00214 * 359.68869 * 8 7 6 10 10 N 1.34775 * 120.00203 * 179.69219 * 8 7 6 11 11 C 1.46500 * 120.00395 * 179.97438 * 10 8 7 12 12 H 1.09007 * 112.84813 * 23.80390 * 11 10 8 13 13 C 1.53780 * 113.61769 * 154.99823 * 11 10 8 14 14 C 1.53779 * 87.07820 * 89.20273 * 13 11 10 15 15 H 1.09003 * 113.61553 * 270.79606 * 14 13 11 16 16 C 1.50696 * 113.61464 * 139.98615 * 14 13 11 17 17 C 1.38007 * 119.94544 * 119.99945 * 16 14 13 18 18 C 1.39319 * 119.88339 * 180.02562 * 17 16 14 19 19 C 1.48467 * 120.12073 * 179.97438 * 18 17 16 20 20 N 1.31806 * 126.67406 * 179.73031 * 19 18 17 21 21 N 1.28874 * 107.81546 * 179.89421 * 20 19 18 22 22 N 1.28729 * 109.31758 * 0.37518 * 21 20 19 23 23 N 1.28989 * 108.94633 * 359.76604 * 22 21 20 24 24 C 1.39285 * 119.76532 * 359.97438 * 18 17 16 25 25 C 1.38052 * 119.88073 * 0.02562 * 24 18 17 26 26 C 1.38288 * 120.11702 * 0.02562 * 25 24 18 27 27 C 1.53774 * 87.08444 * 25.43207 * 14 13 11 28 28 N 1.35533 * 125.55986 * 64.99656 * 4 2 1 29 29 H 0.96702 * 113.99677 * 60.00090 * 1 2 3 30 30 H 1.09000 * 109.47331 * 239.99808 * 2 1 3 31 31 H 1.48503 * 109.99889 * 298.68078 * 3 2 1 32 32 H 1.48505 * 109.99544 * 59.99866 * 3 2 1 33 33 H 1.07999 * 126.07004 * 359.97438 * 5 4 2 34 34 H 1.07995 * 126.46135 * 180.30281 * 6 5 4 35 35 H 0.97008 * 120.00014 * 359.97438 * 10 8 7 36 36 H 1.08997 * 113.61436 * 334.65499 * 13 11 10 37 37 H 1.09001 * 113.61447 * 203.75193 * 13 11 10 38 38 H 1.08000 * 120.06253 * 0.02562 * 17 16 14 39 39 H 0.97000 * 125.34442 * 180.11804 * 21 20 19 40 40 H 1.08001 * 120.05901 * 179.72516 * 24 18 17 41 41 H 1.08000 * 119.93673 * 179.97438 * 25 24 18 42 42 H 1.07995 * 119.88401 * 179.97438 * 26 25 24 43 43 H 1.09004 * 113.61544 * 89.11434 * 27 14 13 44 44 H 1.09003 * 113.61932 * 220.01796 * 27 14 13 45 45 H 0.97002 * 125.68431 * 0.02562 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 2.6323 -0.1392 2.2390 6 6 2.9013 -1.1294 3.1890 7 6 2.3526 -2.3030 2.7173 8 6 2.3931 -3.6086 3.3845 9 8 2.9562 -3.7267 4.4570 10 7 1.8069 -4.6775 2.8100 11 6 1.8478 -5.9817 3.4761 12 1 1.9896 -5.9022 4.5540 13 6 0.6940 -6.9154 3.0738 14 6 1.5982 -7.4122 1.9334 15 1 1.4992 -6.8345 1.0144 16 6 1.5156 -8.8990 1.7016 17 6 1.1051 -9.3833 0.4762 18 6 1.0286 -10.7581 0.2635 19 6 0.5871 -11.2849 -1.0525 20 7 0.4731 -12.5526 -1.3948 21 7 0.0610 -12.5959 -2.6152 22 7 -0.0821 -11.3961 -3.0591 23 7 0.2325 -10.5637 -2.1254 24 6 1.3679 -11.6365 1.2898 25 6 1.7773 -11.1414 2.5117 26 6 1.8503 -9.7759 2.7179 27 6 2.7941 -6.9899 2.8030 28 7 1.7547 -2.0250 1.5090 29 1 -0.3933 0.4417 -0.7651 30 1 1.7924 -0.5139 -0.8899 31 1 1.5880 2.4585 -1.2243 32 1 1.5615 2.4678 1.2085 33 1 2.9269 0.8980 2.3008 34 1 3.4393 -0.9998 4.1164 35 1 1.3578 -4.5834 1.9553 36 1 -0.1946 -6.3875 2.7280 37 1 0.4708 -7.6794 3.8185 38 1 0.8435 -8.6980 -0.3164 39 1 -0.1106 -13.4055 -3.1211 40 1 1.3061 -12.7031 1.1315 41 1 2.0401 -11.8217 3.3082 42 1 2.1707 -9.3927 3.6754 43 1 3.1449 -7.7743 3.4737 44 1 3.6008 -6.5220 2.2387 45 1 1.2851 -2.6637 0.9500 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_280130_17857610_17902476.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 03:31:05 Heat of formation + Delta-G solvation = 158.400913 kcal Electronic energy + Delta-G solvation = -30863.177784 eV Core-core repulsion = 26465.830116 eV Total energy + Delta-G solvation = -4397.347668 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 367.143 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -45.52134 -42.52947 -41.43685 -40.16841 -38.81634 -37.79513 -35.50954 -34.99583 -34.33515 -32.33906 -31.97052 -31.58346 -31.15121 -27.26427 -26.70454 -26.21237 -25.54299 -25.43514 -23.44942 -23.07017 -22.16731 -21.55667 -21.16245 -20.44308 -19.86663 -19.61583 -18.62432 -18.20550 -18.04298 -17.14602 -16.82220 -16.57095 -16.39020 -16.23847 -15.91344 -15.58778 -15.32071 -15.14183 -14.94632 -14.78496 -14.54877 -14.41792 -14.24014 -14.08498 -13.85005 -13.51983 -13.50046 -13.43007 -13.33000 -12.85744 -12.69798 -12.48265 -12.46438 -12.27017 -12.08860 -12.00767 -11.76981 -11.60810 -11.31659 -11.24171 -10.62451 -10.24018 -10.06830 -9.78940 -9.57332 -9.26689 -4.82999 -0.31309 0.12310 0.28993 0.38105 1.22349 1.28128 1.36500 1.53324 1.66255 1.92179 2.00879 2.18796 2.26923 2.62361 2.76045 3.10988 3.28538 3.45193 3.68244 3.70623 3.78787 3.82702 3.92855 4.00977 4.08364 4.19529 4.21045 4.22890 4.28557 4.36883 4.41681 4.46973 4.55902 4.65838 4.79035 4.84443 4.84705 4.95977 4.99748 5.03968 5.06876 5.11108 5.14356 5.42278 5.45214 5.48204 5.55034 5.61478 5.66778 5.79272 5.93278 6.27763 6.45079 6.54616 7.03870 7.05243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.561 6.561 2 C -0.066 4.066 3 Si 0.787 3.213 4 C 0.069 3.931 5 C -0.208 4.208 6 C -0.116 4.116 7 C -0.064 4.064 8 C 0.593 3.407 9 O -0.567 6.567 10 N -0.700 5.700 11 C 0.113 3.887 12 H 0.092 0.908 13 C -0.125 4.125 14 C -0.066 4.066 15 H 0.107 0.893 16 C -0.073 4.073 17 C -0.081 4.081 18 C -0.036 4.036 19 C 0.209 3.791 20 N -0.298 5.298 21 N -0.202 5.202 22 N -0.059 5.059 23 N -0.295 5.295 24 C -0.090 4.090 25 C -0.118 4.118 26 C -0.095 4.095 27 C -0.139 4.139 28 N -0.513 5.513 29 H 0.401 0.599 30 H 0.106 0.894 31 H -0.280 1.280 32 H -0.299 1.299 33 H 0.164 0.836 34 H 0.149 0.851 35 H 0.409 0.591 36 H 0.083 0.917 37 H 0.109 0.891 38 H 0.132 0.868 39 H 0.494 0.506 40 H 0.135 0.865 41 H 0.152 0.848 42 H 0.149 0.851 43 H 0.106 0.894 44 H 0.067 0.933 45 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.104 -2.448 -4.408 5.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.372 6.372 2 C -0.174 4.174 3 Si 0.691 3.309 4 C -0.050 4.050 5 C -0.232 4.232 6 C -0.143 4.143 7 C -0.178 4.178 8 C 0.382 3.618 9 O -0.446 6.446 10 N -0.351 5.351 11 C 0.008 3.992 12 H 0.110 0.890 13 C -0.163 4.163 14 C -0.084 4.084 15 H 0.125 0.875 16 C -0.074 4.074 17 C -0.101 4.101 18 C -0.040 4.040 19 C -0.071 4.071 20 N -0.151 5.151 21 N -0.053 5.053 22 N -0.054 5.054 23 N -0.168 5.168 24 C -0.110 4.110 25 C -0.136 4.136 26 C -0.113 4.113 27 C -0.177 4.177 28 N -0.110 5.110 29 H 0.252 0.748 30 H 0.124 0.876 31 H -0.207 1.207 32 H -0.227 1.227 33 H 0.181 0.819 34 H 0.166 0.834 35 H 0.245 0.755 36 H 0.102 0.898 37 H 0.127 0.873 38 H 0.150 0.850 39 H 0.353 0.647 40 H 0.153 0.847 41 H 0.170 0.830 42 H 0.166 0.834 43 H 0.125 0.875 44 H 0.086 0.914 45 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 0.069 -2.157 -3.850 4.414 hybrid contribution -1.592 -1.091 -1.140 2.242 sum -1.523 -3.248 -4.991 6.146 Atomic orbital electron populations 1.86534 1.18109 1.80983 1.51560 1.24734 0.84387 1.12174 0.96132 0.93429 0.90308 0.70552 0.76640 1.20187 1.02674 0.83805 0.98334 1.20897 1.06869 1.00738 0.94705 1.21476 1.01509 0.90833 1.00453 1.20304 1.11006 0.95520 0.90934 1.17154 0.77900 0.82728 0.84023 1.90843 1.45854 1.85112 1.22782 1.45443 1.56796 1.08102 1.24744 1.21931 0.98181 0.81314 0.97764 0.88967 1.23412 0.96565 0.98274 0.98011 1.21582 0.97169 0.90953 0.98743 0.87527 1.19690 0.99061 0.95731 0.92877 1.21116 0.97851 0.93364 0.97759 1.17385 1.04903 0.94074 0.87596 1.24023 1.01069 0.85356 0.96651 1.74898 1.19483 1.22005 0.98691 1.47818 1.39809 1.10392 1.07292 1.78877 1.15831 0.88964 1.21716 1.76061 1.16766 1.25698 0.98242 1.21326 0.97189 1.00029 0.92485 1.21375 0.99154 0.96093 0.96972 1.21495 0.97206 0.92977 0.99636 1.23572 0.96572 0.98672 0.98921 1.41864 1.42539 1.09593 1.17013 0.74776 0.87626 1.20693 1.22673 0.81889 0.83352 0.75523 0.89837 0.87306 0.84974 0.64732 0.84678 0.83008 0.83367 0.87548 0.91372 0.73256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 1.06 12.86 -148.98 -1.92 -0.86 16 2 C -0.07 0.28 3.07 71.24 0.22 0.50 16 3 Si 0.79 -3.52 30.56 68.60 2.10 -1.43 16 4 C 0.07 0.02 6.50 41.34 0.27 0.29 16 5 C -0.21 -0.48 9.32 22.01 0.21 -0.28 16 6 C -0.12 -0.67 10.65 22.57 0.24 -0.43 16 7 C -0.06 -0.29 7.06 40.35 0.28 0.00 16 8 C 0.59 3.73 7.79 86.45 0.67 4.41 16 9 O -0.57 -8.24 16.48 -4.35 -0.07 -8.31 16 10 N -0.70 0.86 5.26 -443.99 -2.34 -1.48 16 11 C 0.11 -0.22 4.32 45.52 0.20 -0.02 16 12 H 0.09 0.20 7.46 -2.38 -0.02 0.18 16 13 C -0.12 0.73 7.29 31.12 0.23 0.96 16 14 C -0.07 0.35 3.86 -11.02 -0.04 0.31 16 15 H 0.11 -0.73 8.09 -2.39 -0.02 -0.75 16 16 C -0.07 0.18 5.28 -19.90 -0.11 0.07 16 17 C -0.08 -0.09 9.36 22.48 0.21 0.12 16 18 C -0.04 -0.12 5.88 -20.04 -0.12 -0.24 16 19 C 0.21 1.22 7.94 137.38 1.09 2.31 16 20 N -0.30 -0.97 12.08 -52.13 -0.63 -1.60 16 21 N -0.20 0.20 7.90 37.02 0.29 0.49 16 22 N -0.06 -0.28 13.47 37.02 0.50 0.22 16 23 N -0.30 -2.32 12.23 -52.18 -0.64 -2.96 16 24 C -0.09 -0.03 9.70 22.48 0.22 0.19 16 25 C -0.12 0.36 10.03 22.24 0.22 0.59 16 26 C -0.09 0.36 8.60 22.31 0.19 0.56 16 27 C -0.14 0.52 7.25 31.12 0.23 0.75 16 28 N -0.51 0.40 5.99 -171.93 -1.03 -0.63 16 29 H 0.40 -3.94 8.74 -74.06 -0.65 -4.59 16 30 H 0.11 -1.01 7.96 -2.39 -0.02 -1.02 16 31 H -0.28 0.27 7.11 99.48 0.71 0.98 16 32 H -0.30 -1.16 7.11 99.48 0.71 -0.45 16 33 H 0.16 -0.22 6.19 -2.91 -0.02 -0.24 16 34 H 0.15 0.86 8.06 -2.91 -0.02 0.84 16 35 H 0.41 -2.82 7.83 -92.70 -0.73 -3.55 16 36 H 0.08 -0.54 8.14 -2.39 -0.02 -0.56 16 37 H 0.11 -0.75 7.72 -2.39 -0.02 -0.77 16 38 H 0.13 0.10 7.88 -2.91 -0.02 0.08 16 39 H 0.49 -5.19 8.96 -347.53 -3.12 -8.31 16 40 H 0.14 -0.13 7.88 -2.91 -0.02 -0.15 16 41 H 0.15 -1.14 8.06 -2.91 -0.02 -1.16 16 42 H 0.15 -1.17 6.65 -2.91 -0.02 -1.19 16 43 H 0.11 -0.57 6.31 -2.38 -0.02 -0.58 16 44 H 0.07 -0.10 8.14 -2.39 -0.02 -0.12 16 45 H 0.43 -2.80 8.19 -92.71 -0.76 -3.56 16 Total: 0.00 -27.79 387.22 -3.62 -31.41 By element: Atomic # 1 Polarization: -20.84 SS G_CDS: -4.09 Total: -24.93 kcal Atomic # 6 Polarization: 5.88 SS G_CDS: 4.21 Total: 10.09 kcal Atomic # 7 Polarization: -2.13 SS G_CDS: -3.84 Total: -5.97 kcal Atomic # 8 Polarization: -7.18 SS G_CDS: -1.99 Total: -9.17 kcal Atomic # 14 Polarization: -3.52 SS G_CDS: 2.10 Total: -1.43 kcal Total: -27.79 -3.62 -31.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_280130_17857610_17902476.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.810 kcal (2) G-P(sol) polarization free energy of solvation -27.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 162.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 158.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds