Wall clock time and date at job start Sat Mar 6 2021 03:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.33813 * 122.45279 * 2 1 4 4 C 1.50696 * 124.52356 * 359.97438 * 3 2 1 5 5 O 1.42904 * 109.47126 * 113.32543 * 4 3 2 6 6 Si 1.86297 * 109.47351 * 233.32780 * 4 3 2 7 7 S 1.70611 * 110.95573 * 180.02562 * 3 2 1 8 8 C 1.75831 * 91.56299 * 359.97438 * 7 3 2 9 9 C 1.46583 * 125.45963 * 180.02562 * 8 7 3 10 10 O 1.21699 * 120.00277 * 180.02562 * 9 8 7 11 11 N 1.34782 * 119.99847 * 0.02826 * 9 8 7 12 12 C 1.46500 * 119.99634 * 180.02562 * 11 9 8 13 13 H 1.09004 * 112.85466 * 336.19458 * 12 11 9 14 14 C 1.53787 * 113.69091 * 107.46566 * 12 11 9 15 15 C 1.53784 * 87.08021 * 89.12507 * 14 12 11 16 16 H 1.08999 * 113.68727 * 270.87238 * 15 14 12 17 17 C 1.50700 * 113.61327 * 139.98260 * 15 14 12 18 18 C 1.38007 * 119.93751 * 142.49946 * 17 15 14 19 19 C 1.39326 * 119.88050 * 180.02562 * 18 17 15 20 20 C 1.48456 * 120.12140 * 180.02562 * 19 18 17 21 21 N 1.31813 * 126.67521 * 179.69064 * 20 19 18 22 22 N 1.28879 * 107.81550 * 179.83900 * 21 20 19 23 23 N 1.28733 * 109.31549 * 0.43616 * 22 21 20 24 24 N 1.28986 * 108.94772 * 359.72989 * 23 22 21 25 25 C 1.39281 * 119.76047 * 0.02562 * 19 18 17 26 26 C 1.38047 * 119.88497 * 359.97438 * 25 19 18 27 27 C 1.38290 * 120.11745 * 0.02562 * 26 25 19 28 28 C 1.53783 * 87.08239 * 25.43317 * 15 14 12 29 29 C 1.36645 * 109.08645 * 0.26588 * 8 7 3 30 30 H 1.08999 * 109.47154 * 84.89329 * 1 2 3 31 31 H 1.08995 * 109.47280 * 204.90100 * 1 2 3 32 32 H 1.09001 * 109.46427 * 324.89866 * 1 2 3 33 33 H 1.09004 * 109.47276 * 353.32513 * 4 3 2 34 34 H 0.96695 * 113.99962 * 60.00380 * 5 4 3 35 35 H 1.48503 * 110.00213 * 180.02562 * 6 4 3 36 36 H 1.48503 * 109.99880 * 301.31910 * 6 4 3 37 37 H 0.96995 * 119.99961 * 359.97438 * 11 9 8 38 38 H 1.08997 * 113.61447 * 334.57631 * 14 12 11 39 39 H 1.09004 * 113.61617 * 203.67172 * 14 12 11 40 40 H 1.08000 * 120.06616 * 0.04591 * 18 17 15 41 41 H 0.96997 * 125.34009 * 180.16296 * 22 21 20 42 42 H 1.08007 * 120.05538 * 179.72284 * 25 19 18 43 43 H 1.08006 * 119.94366 * 179.97438 * 26 25 19 44 44 H 1.08003 * 119.88021 * 179.97438 * 27 26 25 45 45 H 1.08998 * 113.61251 * 89.11946 * 28 15 14 46 46 H 1.09005 * 113.61015 * 219.93413 * 28 15 14 47 47 H 1.07994 * 123.35749 * 179.73281 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2251 1.1292 0.0000 4 6 1.6357 2.5161 -0.0006 5 8 1.9399 3.1634 1.2366 6 14 2.3588 3.4976 -1.4093 7 16 3.8970 0.7891 -0.0007 8 6 3.5936 -0.9429 -0.0002 9 6 4.6230 -1.9864 0.0000 10 8 4.3000 -3.1598 -0.0001 11 7 5.9272 -1.6465 0.0005 12 6 6.9560 -2.6896 0.0002 13 1 6.5989 -3.6365 0.4051 14 6 7.6911 -2.8320 -1.3431 15 6 8.6834 -1.7791 -0.8220 16 1 8.3919 -0.7533 -1.0474 17 6 10.1177 -2.0720 -1.1799 18 6 10.9697 -1.0383 -1.5116 19 6 12.2954 -1.3105 -1.8428 20 6 13.2167 -0.2025 -2.1999 21 7 14.4890 -0.3110 -2.5268 22 7 14.9362 0.8732 -2.7692 23 7 13.9900 1.7290 -2.5974 24 7 12.9179 1.1034 -2.2468 25 6 12.7531 -2.6260 -1.8378 26 6 11.8924 -3.6525 -1.5045 27 6 10.5775 -3.3767 -1.1765 28 6 8.2976 -2.2317 0.5962 29 6 2.2446 -1.1602 -0.0055 30 1 -0.3633 0.0915 -1.0236 31 1 -0.3633 -0.9321 0.4327 32 1 -0.3632 0.8408 0.5910 33 1 0.5542 2.4513 -0.1204 34 1 2.8867 3.2559 1.4097 35 1 1.7860 4.8677 -1.4204 36 1 3.8361 3.5663 -1.2747 37 1 6.1847 -0.7114 0.0003 38 1 7.1062 -2.4950 -2.1988 39 1 8.1371 -3.8150 -1.4947 40 1 10.6097 -0.0200 -1.5141 41 1 15.8442 1.0864 -3.0352 42 1 13.7786 -2.8428 -2.0981 43 1 12.2462 -4.6729 -1.5007 44 1 9.9073 -4.1828 -0.9168 45 1 8.9095 -3.0505 0.9747 46 1 8.2038 -1.4100 1.3063 47 1 1.8018 -2.1452 -0.0106 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_280130_17857610_17904420.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 03:31:15 Heat of formation + Delta-G solvation = 141.838594 kcal Electronic energy + Delta-G solvation = -32632.810668 eV Core-core repulsion = 28105.559202 eV Total energy + Delta-G solvation = -4527.251466 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 398.120 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -45.41827 -41.67606 -40.55480 -39.78824 -38.82931 -37.67244 -35.41456 -34.88893 -34.24553 -32.58235 -31.97711 -31.35908 -29.90672 -27.32877 -26.83818 -26.16374 -25.48704 -25.38507 -24.31344 -23.10835 -22.26745 -21.89217 -20.53108 -20.21435 -19.81050 -19.52620 -18.14632 -18.10203 -17.80178 -17.47377 -17.03960 -16.60674 -16.44655 -16.14871 -15.99280 -15.86269 -15.48638 -15.39921 -15.03292 -14.86546 -14.65466 -14.51060 -14.41160 -14.25229 -14.04965 -13.62623 -13.51523 -13.44257 -13.33886 -13.19775 -13.05968 -12.92251 -12.55321 -12.48835 -12.35393 -12.32764 -12.16186 -12.06379 -11.83751 -11.80063 -11.65741 -11.33942 -11.11091 -10.97065 -10.20241 -9.83281 -9.72238 -9.60797 -9.49006 -5.10650 -0.65872 -0.29406 0.21905 0.27080 0.32428 0.68123 1.04447 1.26035 1.27467 1.35988 1.44688 1.83155 1.94957 2.14660 2.67277 2.71936 3.15615 3.18822 3.33843 3.46995 3.57357 3.62227 3.69963 3.81235 3.90424 4.04024 4.06812 4.09960 4.16395 4.19971 4.37341 4.40219 4.42455 4.43671 4.52515 4.58438 4.62729 4.66157 4.71229 4.76955 4.82345 4.89399 4.92897 4.95388 4.99969 5.03255 5.24446 5.33923 5.35205 5.40317 5.43456 5.44243 5.58213 5.85145 6.16693 6.32535 7.07649 7.17003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.093 4.093 3 C -0.227 4.227 4 C -0.042 4.042 5 O -0.522 6.522 6 Si 0.672 3.328 7 S 0.185 5.815 8 C -0.258 4.258 9 C 0.596 3.404 10 O -0.522 6.522 11 N -0.710 5.710 12 C 0.120 3.880 13 H 0.110 0.890 14 C -0.143 4.143 15 C -0.074 4.074 16 H 0.100 0.900 17 C -0.073 4.073 18 C -0.072 4.072 19 C -0.017 4.017 20 C 0.218 3.782 21 N -0.293 5.293 22 N -0.226 5.226 23 N -0.046 5.046 24 N -0.269 5.269 25 C -0.083 4.083 26 C -0.118 4.118 27 C -0.095 4.095 28 C -0.136 4.136 29 C -0.043 4.043 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.131 0.869 34 H 0.374 0.626 35 H -0.240 1.240 36 H -0.243 1.243 37 H 0.399 0.601 38 H 0.077 0.923 39 H 0.099 0.901 40 H 0.135 0.865 41 H 0.477 0.523 42 H 0.133 0.867 43 H 0.132 0.868 44 H 0.130 0.870 45 H 0.102 0.898 46 H 0.078 0.922 47 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.982 0.077 -1.979 2.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.106 4.106 3 C -0.346 4.346 4 C -0.154 4.154 5 O -0.328 6.328 6 Si 0.570 3.430 7 S 0.454 5.546 8 C -0.379 4.379 9 C 0.383 3.617 10 O -0.399 6.399 11 N -0.361 5.361 12 C 0.015 3.985 13 H 0.128 0.872 14 C -0.182 4.182 15 C -0.092 4.092 16 H 0.118 0.882 17 C -0.073 4.073 18 C -0.092 4.092 19 C -0.020 4.020 20 C -0.062 4.062 21 N -0.145 5.145 22 N -0.072 5.072 23 N -0.041 5.041 24 N -0.142 5.142 25 C -0.103 4.103 26 C -0.136 4.136 27 C -0.114 4.114 28 C -0.174 4.174 29 C -0.076 4.076 30 H 0.096 0.904 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.148 0.852 34 H 0.222 0.778 35 H -0.164 1.164 36 H -0.167 1.167 37 H 0.233 0.767 38 H 0.096 0.904 39 H 0.117 0.883 40 H 0.153 0.847 41 H 0.332 0.668 42 H 0.151 0.849 43 H 0.150 0.850 44 H 0.148 0.852 45 H 0.120 0.880 46 H 0.097 0.903 47 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 3.092 1.526 -2.268 4.127 hybrid contribution 0.093 -0.586 0.861 1.045 sum 3.184 0.940 -1.407 3.606 Atomic orbital electron populations 1.20629 0.88875 1.03538 1.02975 1.18688 0.98221 0.90671 1.03008 1.24375 0.98368 1.00816 1.11050 1.24590 1.05701 0.89869 0.95235 1.86676 1.29414 1.79647 1.37084 0.94716 0.81076 0.81788 0.85381 1.82912 1.03577 0.98886 1.69216 1.24451 0.98009 0.96497 1.18906 1.16901 0.81486 0.87412 0.75926 1.90862 1.81502 1.18099 1.49418 1.45527 1.05062 1.09782 1.75773 1.21887 0.86961 0.92356 0.97320 0.87243 1.23590 0.96950 0.99817 0.97836 1.21620 0.90687 1.00203 0.96738 0.88195 1.19563 0.95098 0.92907 0.99725 1.21061 0.91404 0.99940 0.96765 1.17204 0.91445 0.89003 1.04338 1.23725 0.89107 0.92365 1.01011 1.74930 1.12576 1.06747 1.20213 1.47765 1.14936 1.01280 1.43211 1.78953 0.92301 1.19534 1.13332 1.76097 1.17519 1.03659 1.16921 1.21197 1.00466 0.90933 0.97694 1.21102 0.93427 0.99347 0.99683 1.21219 0.95778 0.96313 0.98051 1.23453 0.95445 1.02418 0.96065 1.20725 0.90845 1.00137 0.95904 0.90369 0.90887 0.90921 0.85158 0.77805 1.16406 1.16651 0.76664 0.90432 0.88315 0.84717 0.66834 0.84949 0.85007 0.85240 0.88006 0.90318 0.82488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.18 9.48 36.01 0.34 0.52 16 2 C -0.09 0.00 5.78 -106.45 -0.62 -0.62 16 3 C -0.23 0.08 4.83 -35.86 -0.17 -0.09 16 4 C -0.04 0.04 2.77 36.00 0.10 0.14 16 5 O -0.52 -0.29 12.88 -35.23 -0.45 -0.75 16 6 Si 0.67 -1.07 32.13 -169.99 -5.46 -6.53 16 7 S 0.19 -0.16 20.83 -107.50 -2.24 -2.40 16 8 C -0.26 -0.32 6.45 -36.79 -0.24 -0.55 16 9 C 0.60 1.45 7.78 -12.89 -0.10 1.35 16 10 O -0.52 -3.07 16.44 5.19 0.09 -2.99 16 11 N -0.71 0.25 5.26 -54.34 -0.29 -0.03 16 12 C 0.12 -0.12 4.32 -67.11 -0.29 -0.41 16 13 H 0.11 0.04 7.46 -51.93 -0.39 -0.34 16 14 C -0.14 0.24 7.25 -25.91 -0.19 0.05 16 15 C -0.07 0.16 3.86 -90.96 -0.35 -0.19 16 16 H 0.10 -0.27 8.09 -51.93 -0.42 -0.69 16 17 C -0.07 0.06 5.28 -104.67 -0.55 -0.49 16 18 C -0.07 -0.03 9.36 -39.26 -0.37 -0.40 16 19 C -0.02 -0.02 5.88 -104.89 -0.62 -0.64 16 20 C 0.22 0.57 7.94 -156.30 -1.24 -0.67 16 21 N -0.29 -0.45 12.08 32.17 0.39 -0.06 16 22 N -0.23 0.11 7.90 60.35 0.48 0.58 16 23 N -0.05 -0.10 13.47 60.35 0.81 0.71 16 24 N -0.27 -0.97 12.23 32.16 0.39 -0.57 16 25 C -0.08 -0.01 9.70 -39.26 -0.38 -0.40 16 26 C -0.12 0.13 10.03 -39.63 -0.40 -0.27 16 27 C -0.09 0.13 8.60 -39.53 -0.34 -0.21 16 28 C -0.14 0.34 7.29 -25.92 -0.19 0.15 16 29 C -0.04 -0.05 9.78 -40.43 -0.40 -0.44 16 30 H 0.08 -0.24 8.14 -51.93 -0.42 -0.66 16 31 H 0.07 -0.15 8.10 -51.93 -0.42 -0.57 16 32 H 0.07 -0.13 6.99 -51.93 -0.36 -0.49 16 33 H 0.13 -0.25 6.25 -51.93 -0.32 -0.57 16 34 H 0.37 -0.81 8.70 45.56 0.40 -0.42 16 35 H -0.24 -0.29 7.11 56.52 0.40 0.11 16 36 H -0.24 0.05 7.11 56.52 0.40 0.45 16 37 H 0.40 -0.90 7.82 -40.82 -0.32 -1.22 16 38 H 0.08 -0.06 8.14 -51.93 -0.42 -0.48 16 39 H 0.10 -0.24 6.30 -51.93 -0.33 -0.56 16 40 H 0.13 0.02 7.88 -52.49 -0.41 -0.40 16 41 H 0.48 -2.42 8.96 -340.36 -3.05 -5.47 16 42 H 0.13 -0.07 7.88 -52.48 -0.41 -0.48 16 43 H 0.13 -0.39 8.06 -52.48 -0.42 -0.82 16 44 H 0.13 -0.41 6.64 -52.48 -0.35 -0.75 16 45 H 0.10 -0.30 7.72 -51.93 -0.40 -0.70 16 46 H 0.08 -0.21 8.14 -51.93 -0.42 -0.63 16 47 H 0.16 0.13 8.06 -52.49 -0.42 -0.30 16 LS Contribution 413.17 15.07 6.23 6.23 Total: 0.00 -9.81 413.17 -14.16 -23.96 By element: Atomic # 1 Polarization: -6.88 SS G_CDS: -8.11 Total: -14.99 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: -5.99 Total: -3.17 kcal Atomic # 7 Polarization: -1.16 SS G_CDS: 1.79 Total: 0.63 kcal Atomic # 8 Polarization: -3.37 SS G_CDS: -0.37 Total: -3.73 kcal Atomic # 14 Polarization: -1.07 SS G_CDS: -5.46 Total: -6.53 kcal Atomic # 16 Polarization: -0.16 SS G_CDS: -2.24 Total: -2.40 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -9.81 -14.16 -23.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_280130_17857610_17904420.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.802 kcal (2) G-P(sol) polarization free energy of solvation -9.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 155.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 141.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds