Wall clock time and date at job start Sat Mar 6 2021 03:31:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.33813 * 122.45279 * 2 1 4 4 C 1.50696 * 124.52356 * 359.97438 * 3 2 1 5 5 O 1.42904 * 109.47126 * 113.32543 * 4 3 2 6 6 Si 1.86297 * 109.47351 * 233.32780 * 4 3 2 7 7 S 1.70611 * 110.95573 * 180.02562 * 3 2 1 8 8 C 1.75831 * 91.56299 * 359.97438 * 7 3 2 9 9 C 1.46583 * 125.45963 * 180.02562 * 8 7 3 10 10 O 1.21699 * 120.00277 * 180.02562 * 9 8 7 11 11 N 1.34782 * 119.99847 * 0.02826 * 9 8 7 12 12 C 1.46500 * 119.99634 * 180.02562 * 11 9 8 13 13 H 1.09004 * 112.85466 * 336.19458 * 12 11 9 14 14 C 1.53787 * 113.69091 * 107.46566 * 12 11 9 15 15 C 1.53784 * 87.08021 * 89.12507 * 14 12 11 16 16 H 1.08999 * 113.68727 * 270.87238 * 15 14 12 17 17 C 1.50700 * 113.61327 * 139.98260 * 15 14 12 18 18 C 1.38007 * 119.93751 * 142.49946 * 17 15 14 19 19 C 1.39326 * 119.88050 * 180.02562 * 18 17 15 20 20 C 1.48456 * 120.12140 * 180.02562 * 19 18 17 21 21 N 1.31813 * 126.67521 * 179.69064 * 20 19 18 22 22 N 1.28879 * 107.81550 * 179.83900 * 21 20 19 23 23 N 1.28733 * 109.31549 * 0.43616 * 22 21 20 24 24 N 1.28986 * 108.94772 * 359.72989 * 23 22 21 25 25 C 1.39281 * 119.76047 * 0.02562 * 19 18 17 26 26 C 1.38047 * 119.88497 * 359.97438 * 25 19 18 27 27 C 1.38290 * 120.11745 * 0.02562 * 26 25 19 28 28 C 1.53783 * 87.08239 * 25.43317 * 15 14 12 29 29 C 1.36645 * 109.08645 * 0.26588 * 8 7 3 30 30 H 1.08999 * 109.47154 * 84.89329 * 1 2 3 31 31 H 1.08995 * 109.47280 * 204.90100 * 1 2 3 32 32 H 1.09001 * 109.46427 * 324.89866 * 1 2 3 33 33 H 1.09004 * 109.47276 * 353.32513 * 4 3 2 34 34 H 0.96695 * 113.99962 * 60.00380 * 5 4 3 35 35 H 1.48503 * 110.00213 * 180.02562 * 6 4 3 36 36 H 1.48503 * 109.99880 * 301.31910 * 6 4 3 37 37 H 0.96995 * 119.99961 * 359.97438 * 11 9 8 38 38 H 1.08997 * 113.61447 * 334.57631 * 14 12 11 39 39 H 1.09004 * 113.61617 * 203.67172 * 14 12 11 40 40 H 1.08000 * 120.06616 * 0.04591 * 18 17 15 41 41 H 0.96997 * 125.34009 * 180.16296 * 22 21 20 42 42 H 1.08007 * 120.05538 * 179.72284 * 25 19 18 43 43 H 1.08006 * 119.94366 * 179.97438 * 26 25 19 44 44 H 1.08003 * 119.88021 * 179.97438 * 27 26 25 45 45 H 1.08998 * 113.61251 * 89.11946 * 28 15 14 46 46 H 1.09005 * 113.61015 * 219.93413 * 28 15 14 47 47 H 1.07994 * 123.35749 * 179.73281 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2251 1.1292 0.0000 4 6 1.6357 2.5161 -0.0006 5 8 1.9399 3.1634 1.2366 6 14 2.3588 3.4976 -1.4093 7 16 3.8970 0.7891 -0.0007 8 6 3.5936 -0.9429 -0.0002 9 6 4.6230 -1.9864 0.0000 10 8 4.3000 -3.1598 -0.0001 11 7 5.9272 -1.6465 0.0005 12 6 6.9560 -2.6896 0.0002 13 1 6.5989 -3.6365 0.4051 14 6 7.6911 -2.8320 -1.3431 15 6 8.6834 -1.7791 -0.8220 16 1 8.3919 -0.7533 -1.0474 17 6 10.1177 -2.0720 -1.1799 18 6 10.9697 -1.0383 -1.5116 19 6 12.2954 -1.3105 -1.8428 20 6 13.2167 -0.2025 -2.1999 21 7 14.4890 -0.3110 -2.5268 22 7 14.9362 0.8732 -2.7692 23 7 13.9900 1.7290 -2.5974 24 7 12.9179 1.1034 -2.2468 25 6 12.7531 -2.6260 -1.8378 26 6 11.8924 -3.6525 -1.5045 27 6 10.5775 -3.3767 -1.1765 28 6 8.2976 -2.2317 0.5962 29 6 2.2446 -1.1602 -0.0055 30 1 -0.3633 0.0915 -1.0236 31 1 -0.3633 -0.9321 0.4327 32 1 -0.3632 0.8408 0.5910 33 1 0.5542 2.4513 -0.1204 34 1 2.8867 3.2559 1.4097 35 1 1.7860 4.8677 -1.4204 36 1 3.8361 3.5663 -1.2747 37 1 6.1847 -0.7114 0.0003 38 1 7.1062 -2.4950 -2.1988 39 1 8.1371 -3.8150 -1.4947 40 1 10.6097 -0.0200 -1.5141 41 1 15.8442 1.0864 -3.0352 42 1 13.7786 -2.8428 -2.0981 43 1 12.2462 -4.6729 -1.5007 44 1 9.9073 -4.1828 -0.9168 45 1 8.9095 -3.0505 0.9747 46 1 8.2038 -1.4100 1.3063 47 1 1.8018 -2.1452 -0.0106 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_280130_17857610_17904420.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 03:31:13 Heat of formation + Delta-G solvation = 142.858033 kcal Electronic energy + Delta-G solvation = -32632.766462 eV Core-core repulsion = 28105.559202 eV Total energy + Delta-G solvation = -4527.207260 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 398.120 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -45.51096 -41.65162 -40.58205 -39.76419 -38.83438 -37.67363 -35.49864 -34.97214 -34.31633 -32.56451 -31.92346 -31.33920 -29.81935 -27.30801 -26.69720 -26.14823 -25.53071 -25.40307 -24.30720 -23.07269 -22.23781 -21.94742 -20.53264 -20.21573 -19.78073 -19.53159 -18.19613 -18.10308 -17.78926 -17.44921 -17.03710 -16.56373 -16.39183 -16.24177 -15.96455 -15.83901 -15.46941 -15.42790 -15.09525 -14.81711 -14.63225 -14.44240 -14.38185 -14.20239 -14.03595 -13.50345 -13.45210 -13.44165 -13.33287 -13.15270 -12.99951 -12.84970 -12.48980 -12.46760 -12.44342 -12.29923 -12.25564 -12.08000 -11.78441 -11.75169 -11.59962 -11.30588 -11.22855 -10.94132 -10.25176 -9.77743 -9.72146 -9.56022 -9.43848 -4.99622 -0.69510 -0.30301 0.13237 0.27915 0.39125 0.69063 1.09528 1.26575 1.29196 1.37358 1.52125 1.88671 1.93706 2.04221 2.63389 2.77212 3.11955 3.26420 3.45283 3.51456 3.63881 3.70403 3.75292 3.93449 4.01808 4.09527 4.09752 4.20634 4.24085 4.24222 4.37839 4.42747 4.45567 4.53055 4.56878 4.64204 4.77601 4.79953 4.85301 4.86787 4.89877 5.00371 5.02559 5.04937 5.08097 5.14268 5.31786 5.42067 5.43490 5.46407 5.49390 5.55947 5.67405 5.94490 6.29963 6.31517 6.98681 7.06171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.099 4.099 3 C -0.230 4.230 4 C -0.048 4.048 5 O -0.540 6.540 6 Si 0.738 3.262 7 S 0.221 5.779 8 C -0.279 4.279 9 C 0.594 3.406 10 O -0.566 6.566 11 N -0.699 5.699 12 C 0.113 3.887 13 H 0.095 0.905 14 C -0.139 4.139 15 C -0.069 4.069 16 H 0.105 0.895 17 C -0.073 4.073 18 C -0.081 4.081 19 C -0.036 4.036 20 C 0.209 3.791 21 N -0.298 5.298 22 N -0.203 5.203 23 N -0.059 5.059 24 N -0.296 5.296 25 C -0.090 4.090 26 C -0.118 4.118 27 C -0.094 4.094 28 C -0.125 4.125 29 C -0.052 4.052 30 H 0.093 0.907 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.141 0.859 34 H 0.384 0.616 35 H -0.280 1.280 36 H -0.258 1.258 37 H 0.409 0.591 38 H 0.068 0.932 39 H 0.108 0.892 40 H 0.132 0.868 41 H 0.494 0.506 42 H 0.135 0.865 43 H 0.153 0.847 44 H 0.150 0.850 45 H 0.111 0.889 46 H 0.084 0.916 47 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.333 0.002 -2.022 3.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.112 4.112 3 C -0.350 4.350 4 C -0.159 4.159 5 O -0.348 6.348 6 Si 0.639 3.361 7 S 0.491 5.509 8 C -0.399 4.399 9 C 0.381 3.619 10 O -0.446 6.446 11 N -0.350 5.350 12 C 0.008 3.992 13 H 0.113 0.887 14 C -0.178 4.178 15 C -0.087 4.087 16 H 0.123 0.877 17 C -0.073 4.073 18 C -0.101 4.101 19 C -0.040 4.040 20 C -0.071 4.071 21 N -0.151 5.151 22 N -0.053 5.053 23 N -0.054 5.054 24 N -0.168 5.168 25 C -0.110 4.110 26 C -0.136 4.136 27 C -0.113 4.113 28 C -0.163 4.163 29 C -0.086 4.086 30 H 0.111 0.889 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.159 0.841 34 H 0.233 0.767 35 H -0.206 1.206 36 H -0.183 1.183 37 H 0.245 0.755 38 H 0.087 0.913 39 H 0.127 0.873 40 H 0.150 0.850 41 H 0.353 0.647 42 H 0.153 0.847 43 H 0.170 0.830 44 H 0.167 0.833 45 H 0.129 0.871 46 H 0.102 0.898 47 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 3.489 1.477 -2.312 4.439 hybrid contribution 0.036 -0.529 0.873 1.022 sum 3.525 0.948 -1.439 3.923 Atomic orbital electron populations 1.20688 0.87712 1.03677 1.03991 1.18832 0.99157 0.90278 1.02933 1.24540 0.98748 1.01032 1.10666 1.24787 1.06585 0.89473 0.95057 1.86651 1.30566 1.79780 1.37794 0.93918 0.78955 0.78986 0.84235 1.82718 1.03068 0.96804 1.68332 1.24473 0.97922 0.97644 1.19878 1.17119 0.82352 0.87071 0.75366 1.90830 1.82236 1.19781 1.51771 1.45482 1.04449 1.10568 1.74462 1.21965 0.87260 0.91762 0.98257 0.88712 1.23584 0.96738 1.00487 0.96943 1.21598 0.89869 1.00381 0.96836 0.87667 1.19673 0.95333 0.92916 0.99358 1.21122 0.91438 1.00270 0.97297 1.17381 0.91776 0.89249 1.05550 1.24027 0.89588 0.92452 1.01024 1.74899 1.12362 1.07318 1.20481 1.47820 1.15405 1.00513 1.41584 1.78879 0.92655 1.19949 1.13925 1.76065 1.18302 1.04297 1.18118 1.21323 1.00951 0.90808 0.97936 1.21374 0.93367 0.99997 0.98836 1.21492 0.96026 0.96587 0.97146 1.23424 0.94137 1.02805 0.95924 1.20834 0.91109 1.00469 0.96158 0.88887 0.90809 0.90710 0.84117 0.76657 1.20588 1.18325 0.75492 0.91319 0.87349 0.85035 0.64740 0.84681 0.82979 0.83287 0.87089 0.89782 0.82999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.39 9.48 71.24 0.68 1.07 16 2 C -0.10 0.00 5.78 -21.05 -0.12 -0.12 16 3 C -0.23 0.25 4.83 24.68 0.12 0.37 16 4 C -0.05 0.12 2.77 71.23 0.20 0.32 16 5 O -0.54 -0.36 12.88 -148.98 -1.92 -2.28 16 6 Si 0.74 -2.61 32.13 68.60 2.20 -0.41 16 7 S 0.22 -0.44 20.83 -56.49 -1.18 -1.61 16 8 C -0.28 -0.88 6.45 24.08 0.16 -0.72 16 9 C 0.59 3.54 7.78 86.42 0.67 4.21 16 10 O -0.57 -7.72 16.44 -4.35 -0.07 -7.79 16 11 N -0.70 0.21 5.26 -444.06 -2.34 -2.13 16 12 C 0.11 -0.20 4.32 45.52 0.20 0.00 16 13 H 0.09 0.16 7.46 -2.38 -0.02 0.14 16 14 C -0.14 0.50 7.25 31.12 0.23 0.73 16 15 C -0.07 0.33 3.86 -11.01 -0.04 0.29 16 16 H 0.11 -0.61 8.09 -2.39 -0.02 -0.63 16 17 C -0.07 0.16 5.28 -19.90 -0.11 0.06 16 18 C -0.08 -0.11 9.36 22.48 0.21 0.10 16 19 C -0.04 -0.12 5.88 -20.04 -0.12 -0.24 16 20 C 0.21 1.27 7.94 137.38 1.09 2.36 16 21 N -0.30 -1.02 12.08 -52.13 -0.63 -1.65 16 22 N -0.20 0.15 7.90 37.02 0.29 0.45 16 23 N -0.06 -0.30 13.47 37.02 0.50 0.20 16 24 N -0.30 -2.42 12.23 -52.18 -0.64 -3.06 16 25 C -0.09 -0.03 9.70 22.48 0.22 0.19 16 26 C -0.12 0.37 10.03 22.24 0.22 0.60 16 27 C -0.09 0.37 8.60 22.30 0.19 0.56 16 28 C -0.13 0.71 7.29 31.12 0.23 0.93 16 29 C -0.05 -0.16 9.78 21.72 0.21 0.06 16 30 H 0.09 -0.64 8.14 -2.39 -0.02 -0.66 16 31 H 0.07 -0.29 8.10 -2.39 -0.02 -0.31 16 32 H 0.07 -0.31 6.99 -2.39 -0.02 -0.33 16 33 H 0.14 -0.66 6.25 -2.38 -0.01 -0.67 16 34 H 0.38 -1.85 8.70 -74.06 -0.64 -2.49 16 35 H -0.28 -0.86 7.11 99.48 0.71 -0.16 16 36 H -0.26 0.27 7.11 99.48 0.71 0.97 16 37 H 0.41 -1.89 7.82 -92.71 -0.72 -2.61 16 38 H 0.07 -0.10 8.14 -2.39 -0.02 -0.11 16 39 H 0.11 -0.61 6.30 -2.39 -0.02 -0.62 16 40 H 0.13 0.17 7.88 -2.91 -0.02 0.15 16 41 H 0.49 -5.10 8.96 -347.53 -3.12 -8.22 16 42 H 0.14 -0.13 7.88 -2.91 -0.02 -0.15 16 43 H 0.15 -1.16 8.06 -2.91 -0.02 -1.18 16 44 H 0.15 -1.21 6.64 -2.91 -0.02 -1.23 16 45 H 0.11 -0.79 7.72 -2.39 -0.02 -0.81 16 46 H 0.08 -0.53 8.14 -2.38 -0.02 -0.54 16 47 H 0.15 0.50 8.06 -2.91 -0.02 0.48 16 Total: 0.00 -23.62 413.17 -2.91 -26.53 By element: Atomic # 1 Polarization: -15.63 SS G_CDS: -3.36 Total: -18.99 kcal Atomic # 6 Polarization: 6.52 SS G_CDS: 4.23 Total: 10.74 kcal Atomic # 7 Polarization: -3.38 SS G_CDS: -2.81 Total: -6.19 kcal Atomic # 8 Polarization: -8.08 SS G_CDS: -1.99 Total: -10.07 kcal Atomic # 14 Polarization: -2.61 SS G_CDS: 2.20 Total: -0.41 kcal Atomic # 16 Polarization: -0.44 SS G_CDS: -1.18 Total: -1.61 kcal Total: -23.62 -2.91 -26.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_280130_17857610_17904420.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.386 kcal (2) G-P(sol) polarization free energy of solvation -23.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds