Wall clock time and date at job start Sat Mar 6 2021 03:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86305 * 109.46753 * 2 1 4 4 C 1.50699 * 109.46973 * 119.99707 * 2 1 3 5 5 C 1.34849 * 125.89046 * 244.96129 * 4 2 1 6 6 C 1.40894 * 107.41711 * 179.80785 * 5 4 2 7 7 C 1.34857 * 107.41542 * 0.37839 * 6 5 4 8 8 C 1.50696 * 125.88832 * 179.88466 * 7 6 5 9 9 C 1.50698 * 109.47454 * 274.69253 * 8 7 6 10 10 O 1.21279 * 119.99693 * 0.02562 * 9 8 7 11 11 N 1.34771 * 120.00224 * 180.02562 * 9 8 7 12 12 C 1.46496 * 120.00199 * 179.97438 * 11 9 8 13 13 H 1.09001 * 112.85125 * 23.80817 * 12 11 9 14 14 C 1.53781 * 113.61508 * 154.99655 * 12 11 9 15 15 C 1.53783 * 87.07825 * 89.12293 * 14 12 11 16 16 H 1.08998 * 113.61552 * 270.79825 * 15 14 12 17 17 C 1.50700 * 113.61576 * 139.98115 * 15 14 12 18 18 C 1.38014 * 119.94273 * 121.55033 * 17 15 14 19 19 C 1.39315 * 119.88062 * 179.97438 * 18 17 15 20 20 C 1.48469 * 120.11370 * 180.02562 * 19 18 17 21 21 N 1.31814 * 126.67224 * 179.68984 * 20 19 18 22 22 N 1.28871 * 107.81560 * 179.89725 * 21 20 19 23 23 N 1.28736 * 109.31847 * 0.37360 * 22 21 20 24 24 N 1.28981 * 108.94374 * 359.76784 * 23 22 21 25 25 C 1.39271 * 119.76918 * 359.97438 * 19 18 17 26 26 C 1.38055 * 119.88127 * 0.02562 * 25 19 18 27 27 C 1.38292 * 120.11393 * 359.97438 * 26 25 19 28 28 C 1.53777 * 87.17413 * 25.39222 * 15 14 12 29 29 N 1.36338 * 108.21645 * 359.62087 * 7 6 5 30 30 H 0.96697 * 114.00079 * 60.00198 * 1 2 3 31 31 H 1.08991 * 109.47485 * 240.00123 * 2 1 3 32 32 H 1.48501 * 109.99827 * 59.99832 * 3 2 1 33 33 H 1.48500 * 110.00009 * 181.31393 * 3 2 1 34 34 H 1.08001 * 126.29390 * 0.02562 * 5 4 2 35 35 H 1.07997 * 126.29579 * 180.23923 * 6 5 4 36 36 H 1.09005 * 109.47050 * 154.68914 * 8 7 6 37 37 H 1.09003 * 109.47324 * 34.69387 * 8 7 6 38 38 H 0.97004 * 120.00003 * 0.02562 * 11 9 8 39 39 H 1.09000 * 113.61880 * 334.57799 * 14 12 11 40 40 H 1.09003 * 113.61758 * 203.66716 * 14 12 11 41 41 H 1.08001 * 120.05814 * 0.02562 * 18 17 15 42 42 H 0.97001 * 125.34254 * 180.14184 * 22 21 20 43 43 H 1.08001 * 120.06052 * 180.29852 * 25 19 18 44 44 H 1.07997 * 119.94171 * 179.97438 * 26 25 19 45 45 H 1.08006 * 119.87891 * 179.97438 * 27 26 25 46 46 H 1.08998 * 113.62108 * 89.15884 * 28 15 14 47 47 H 1.09004 * 113.61692 * 220.06347 * 28 15 14 48 48 H 0.96995 * 125.63457 * 180.21299 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7103 1.2305 5 6 2.6307 -0.1487 2.2374 6 6 2.8942 -1.1594 3.1830 7 6 2.3529 -2.3021 2.7138 8 6 2.3934 -3.6445 3.3974 9 6 3.6800 -4.3472 3.0486 10 8 4.4851 -3.8106 2.3174 11 7 3.9361 -5.5720 3.5493 12 6 5.1866 -6.2554 3.2098 13 1 5.9790 -5.5669 2.9163 14 6 5.6272 -7.2906 4.2582 15 6 4.7913 -8.3194 3.4787 16 1 3.7531 -8.3764 3.8057 17 6 5.4460 -9.6725 3.3715 18 6 4.8019 -10.7903 3.8619 19 6 5.4082 -12.0406 3.7617 20 6 4.7197 -13.2466 4.2870 21 7 5.1683 -14.4856 4.2555 22 7 4.2832 -15.2397 4.8111 23 7 3.2847 -14.5189 5.1865 24 7 3.5183 -13.2879 4.8803 25 6 6.6618 -12.1555 3.1660 26 6 7.2974 -11.0310 2.6787 27 6 6.6911 -9.7922 2.7808 28 6 4.9988 -7.4348 2.2381 29 7 1.7577 -2.0319 1.5174 30 1 -0.3933 0.4417 -0.7650 31 1 1.7924 -0.5138 -0.8899 32 1 1.5613 2.4679 1.2085 33 1 3.5345 1.7705 -0.0320 34 1 2.9306 0.8864 2.3079 35 1 3.4327 -1.0414 4.1116 36 1 1.5483 -4.2473 3.0646 37 1 2.3369 -3.5044 4.4769 38 1 3.2919 -6.0014 4.1338 39 1 5.2467 -7.0874 5.2593 40 1 6.6973 -7.4974 4.2449 41 1 3.8293 -10.6960 4.3218 42 1 4.3562 -16.2002 4.9253 43 1 7.1340 -13.1231 3.0814 44 1 8.2697 -11.1189 2.2169 45 1 7.1920 -8.9149 2.3986 46 1 5.8967 -7.6809 1.6714 47 1 4.1117 -7.3476 1.6106 48 1 1.2887 -2.6739 0.9618 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_280130_17857610_17907336.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 03:31:22 Heat of formation + Delta-G solvation = 153.860669 kcal Electronic energy + Delta-G solvation = -32401.265485 eV Core-core repulsion = 27848.183318 eV Total energy + Delta-G solvation = -4553.082167 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 381.159 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -45.51200 -42.44966 -41.50318 -40.30239 -38.84713 -37.65132 -35.49110 -34.90702 -34.28226 -33.18027 -32.10475 -31.97546 -31.37003 -29.48403 -26.67478 -26.46356 -25.66742 -25.52244 -24.94696 -23.08623 -22.47783 -21.94639 -21.50099 -21.11794 -20.43584 -19.80664 -18.51193 -18.39414 -18.19619 -18.15195 -17.77079 -16.93798 -16.55651 -16.36454 -16.19605 -15.83270 -15.53560 -15.36371 -15.10487 -15.04541 -14.95548 -14.64483 -14.44423 -14.38693 -14.28756 -14.12525 -13.62468 -13.46952 -13.43903 -13.39641 -13.27792 -12.87538 -12.81727 -12.53217 -12.46465 -12.45331 -12.25825 -12.06305 -12.04981 -11.74141 -11.57782 -11.22040 -11.02202 -10.43122 -10.06999 -9.96389 -9.78620 -9.56602 -9.08442 -4.98393 -0.30963 0.13190 0.38163 0.98029 1.23887 1.28591 1.37321 1.58143 1.67383 1.74166 2.04597 2.20282 2.40882 2.63098 2.76265 3.11726 3.44334 3.49822 3.61192 3.71818 3.73477 3.91555 3.93724 3.99600 4.02935 4.08700 4.15381 4.20135 4.25220 4.25506 4.31359 4.37756 4.42222 4.55811 4.57109 4.65719 4.69785 4.80414 4.86494 4.89799 5.02264 5.05231 5.06086 5.08518 5.13030 5.20065 5.42649 5.46594 5.54526 5.55913 5.69861 5.83693 5.93249 5.96272 6.49916 6.59718 6.85393 7.06185 7.24815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.566 6.566 2 C -0.059 4.059 3 Si 0.815 3.185 4 C 0.019 3.981 5 C -0.227 4.227 6 C -0.201 4.201 7 C 0.040 3.960 8 C -0.066 4.066 9 C 0.515 3.485 10 O -0.577 6.577 11 N -0.700 5.700 12 C 0.114 3.886 13 H 0.082 0.918 14 C -0.125 4.125 15 C -0.065 4.065 16 H 0.111 0.889 17 C -0.074 4.074 18 C -0.080 4.080 19 C -0.035 4.035 20 C 0.208 3.792 21 N -0.298 5.298 22 N -0.203 5.203 23 N -0.059 5.059 24 N -0.294 5.294 25 C -0.091 4.091 26 C -0.119 4.119 27 C -0.096 4.096 28 C -0.141 4.141 29 N -0.531 5.531 30 H 0.406 0.594 31 H 0.090 0.910 32 H -0.297 1.297 33 H -0.298 1.298 34 H 0.126 0.874 35 H 0.142 0.858 36 H 0.133 0.867 37 H 0.145 0.855 38 H 0.418 0.582 39 H 0.087 0.913 40 H 0.102 0.898 41 H 0.134 0.866 42 H 0.494 0.506 43 H 0.135 0.865 44 H 0.151 0.849 45 H 0.146 0.854 46 H 0.098 0.902 47 H 0.067 0.933 48 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.136 -3.634 -1.897 4.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.376 6.376 2 C -0.168 4.168 3 Si 0.720 3.280 4 C -0.095 4.095 5 C -0.252 4.252 6 C -0.225 4.225 7 C -0.075 4.075 8 C -0.106 4.106 9 C 0.302 3.698 10 O -0.455 6.455 11 N -0.352 5.352 12 C 0.009 3.991 13 H 0.100 0.900 14 C -0.163 4.163 15 C -0.083 4.083 16 H 0.129 0.871 17 C -0.074 4.074 18 C -0.100 4.100 19 C -0.039 4.039 20 C -0.072 4.072 21 N -0.151 5.151 22 N -0.053 5.053 23 N -0.054 5.054 24 N -0.166 5.166 25 C -0.111 4.111 26 C -0.137 4.137 27 C -0.115 4.115 28 C -0.179 4.179 29 N -0.126 5.126 30 H 0.258 0.742 31 H 0.108 0.892 32 H -0.225 1.225 33 H -0.226 1.226 34 H 0.144 0.856 35 H 0.160 0.840 36 H 0.151 0.849 37 H 0.163 0.837 38 H 0.256 0.744 39 H 0.106 0.894 40 H 0.121 0.879 41 H 0.152 0.848 42 H 0.353 0.647 43 H 0.153 0.847 44 H 0.169 0.831 45 H 0.163 0.837 46 H 0.117 0.883 47 H 0.086 0.914 48 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -0.623 -3.454 -1.247 3.725 hybrid contribution 0.150 -1.562 0.251 1.589 sum -0.473 -5.016 -0.996 5.136 Atomic orbital electron populations 1.86433 1.17033 1.82515 1.51597 1.24555 0.85903 1.11397 0.94948 0.94492 0.76558 0.73188 0.83769 1.20124 1.05710 0.84743 0.98963 1.20725 1.08127 0.99435 0.96937 1.20794 1.07220 0.92550 1.01985 1.19949 1.02643 0.96441 0.88437 1.20271 0.96271 0.90287 1.03819 1.20924 0.88414 0.81209 0.79257 1.90756 1.49918 1.66653 1.38216 1.45554 1.21444 1.17274 1.50935 1.21863 0.86981 0.93095 0.97197 0.89973 1.23388 1.01489 0.93000 0.98397 1.21588 1.00076 0.89229 0.97398 0.87095 1.19725 0.94926 0.94510 0.98208 1.21133 1.00140 0.90461 0.98261 1.17380 0.95224 0.88079 1.03181 1.24027 0.91024 0.92319 0.99808 1.74898 1.18643 1.02867 1.18662 1.47821 1.08496 1.14257 1.34759 1.78881 1.12629 0.97597 1.16291 1.76059 1.14801 1.10049 1.15705 1.21314 0.93026 1.00374 0.96368 1.21362 1.01059 0.91701 0.99570 1.21471 0.94460 0.98457 0.97080 1.23581 1.03218 0.94714 0.96391 1.41850 1.43909 1.08907 1.17975 0.74233 0.89228 1.22496 1.22606 0.85645 0.84011 0.84928 0.83733 0.74399 0.89414 0.87931 0.84801 0.64737 0.84703 0.83148 0.83668 0.88333 0.91409 0.73826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 -0.36 12.86 -148.98 -1.92 -2.28 16 2 C -0.06 -0.12 3.07 71.24 0.22 0.10 16 3 Si 0.81 0.54 30.60 68.60 2.10 2.64 16 4 C 0.02 0.17 6.53 41.08 0.27 0.44 16 5 C -0.23 -2.79 9.37 22.14 0.21 -2.58 16 6 C -0.20 -2.06 10.77 22.14 0.24 -1.83 16 7 C 0.04 0.23 5.66 41.08 0.23 0.47 16 8 C -0.07 0.21 6.24 29.10 0.18 0.39 16 9 C 0.51 1.01 7.82 87.66 0.69 1.69 16 10 O -0.58 -7.48 15.63 -3.03 -0.05 -7.53 16 11 N -0.70 3.04 5.26 -439.78 -2.31 0.72 16 12 C 0.11 -0.31 4.33 45.58 0.20 -0.12 16 13 H 0.08 0.21 7.46 -2.39 -0.02 0.20 16 14 C -0.12 0.79 7.29 31.12 0.23 1.02 16 15 C -0.06 0.37 3.85 -11.01 -0.04 0.33 16 16 H 0.11 -0.86 8.08 -2.39 -0.02 -0.88 16 17 C -0.07 0.18 5.29 -19.90 -0.11 0.07 16 18 C -0.08 -0.07 9.36 22.48 0.21 0.14 16 19 C -0.04 -0.11 5.88 -20.04 -0.12 -0.23 16 20 C 0.21 1.21 7.94 137.38 1.09 2.30 16 21 N -0.30 -0.96 12.08 -52.12 -0.63 -1.59 16 22 N -0.20 0.20 7.90 37.02 0.29 0.49 16 23 N -0.06 -0.28 13.47 37.02 0.50 0.22 16 24 N -0.29 -2.27 12.23 -52.17 -0.64 -2.91 16 25 C -0.09 -0.04 9.70 22.47 0.22 0.18 16 26 C -0.12 0.32 10.03 22.24 0.22 0.55 16 27 C -0.10 0.33 8.53 22.30 0.19 0.52 16 28 C -0.14 0.56 7.27 31.18 0.23 0.78 16 29 N -0.53 -3.17 6.07 -171.12 -1.04 -4.21 16 30 H 0.41 -4.23 8.74 -74.06 -0.65 -4.88 16 31 H 0.09 -0.17 7.96 -2.39 -0.02 -0.19 16 32 H -0.30 -2.48 7.11 99.48 0.71 -1.77 16 33 H -0.30 -2.32 7.11 99.48 0.71 -1.61 16 34 H 0.13 1.51 6.24 -2.91 -0.02 1.49 16 35 H 0.14 1.08 8.06 -2.91 -0.02 1.06 16 36 H 0.13 -1.23 8.14 -2.38 -0.02 -1.25 16 37 H 0.14 -1.19 8.14 -2.39 -0.02 -1.21 16 38 H 0.42 -4.53 8.70 -92.71 -0.81 -5.34 16 39 H 0.09 -0.67 8.14 -2.39 -0.02 -0.69 16 40 H 0.10 -0.68 7.64 -2.39 -0.02 -0.70 16 41 H 0.13 0.06 7.88 -2.91 -0.02 0.04 16 42 H 0.49 -5.20 8.96 -347.53 -3.12 -8.32 16 43 H 0.14 -0.10 7.88 -2.91 -0.02 -0.13 16 44 H 0.15 -1.05 8.06 -2.91 -0.02 -1.08 16 45 H 0.15 -1.03 6.71 -2.91 -0.02 -1.05 16 46 H 0.10 -0.45 6.39 -2.39 -0.02 -0.46 16 47 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 48 H 0.42 0.36 8.96 -92.71 -0.83 -0.47 16 Total: 0.00 -34.02 409.53 -3.63 -37.65 By element: Atomic # 1 Polarization: -23.13 SS G_CDS: -4.28 Total: -27.42 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: 4.35 Total: 4.22 kcal Atomic # 7 Polarization: -3.45 SS G_CDS: -3.83 Total: -7.28 kcal Atomic # 8 Polarization: -7.84 SS G_CDS: -1.96 Total: -9.81 kcal Atomic # 14 Polarization: 0.54 SS G_CDS: 2.10 Total: 2.64 kcal Total: -34.02 -3.63 -37.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_280130_17857610_17907336.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.506 kcal (2) G-P(sol) polarization free energy of solvation -34.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 157.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 153.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds