Wall clock time and date at job start Sat Mar 6 2021 03:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37782 * 119.84975 * 2 1 4 4 C 1.39713 * 119.90799 * 179.97438 * 3 2 1 5 5 C 1.47540 * 120.19218 * 179.97438 * 4 3 2 6 6 O 1.21587 * 119.99986 * 179.97438 * 5 4 3 7 7 N 1.34778 * 119.99667 * 0.02562 * 5 4 3 8 8 C 1.46497 * 119.99707 * 179.97438 * 7 5 4 9 9 H 1.09001 * 112.85130 * 23.80355 * 8 7 5 10 10 C 1.53781 * 113.61535 * 154.99583 * 8 7 5 11 11 C 1.53785 * 87.08227 * 89.11674 * 10 8 7 12 12 H 1.08995 * 113.61117 * 270.80560 * 11 10 8 13 13 C 1.50701 * 113.61587 * 139.98163 * 11 10 8 14 14 C 1.37999 * 119.93996 * 121.53337 * 13 11 10 15 15 C 1.39319 * 119.88124 * 180.02562 * 14 13 11 16 16 C 1.48467 * 120.12109 * 180.02562 * 15 14 13 17 17 N 1.31810 * 126.67672 * 179.97438 * 16 15 14 18 18 N 1.28868 * 107.81718 * 179.97438 * 17 16 15 19 19 N 1.28730 * 109.31881 * 0.02562 * 18 17 16 20 20 N 1.28987 * 108.94296 * 359.74442 * 19 18 17 21 21 C 1.39285 * 119.76532 * 359.97438 * 15 14 13 22 22 C 1.38052 * 119.88073 * 0.02562 * 21 15 14 23 23 C 1.38288 * 120.11702 * 359.97438 * 22 21 15 24 24 C 1.53782 * 87.16886 * 25.38946 * 11 10 8 25 25 C 1.40131 * 119.61590 * 0.26018 * 4 3 2 26 26 O 1.35653 * 120.14889 * 179.71991 * 25 4 3 27 27 C 1.38714 * 119.70222 * 359.50810 * 25 4 3 28 28 C 1.50691 * 119.95856 * 180.20725 * 27 25 4 29 29 O 1.42894 * 109.47494 * 285.28024 * 28 27 25 30 30 Si 1.86302 * 109.47044 * 165.28108 * 28 27 25 31 31 C 1.38058 * 120.07705 * 0.49389 * 27 25 4 32 32 H 1.09001 * 109.47046 * 90.00057 * 1 2 3 33 33 H 1.08996 * 109.47316 * 209.99388 * 1 2 3 34 34 H 1.09001 * 109.47229 * 330.00355 * 1 2 3 35 35 H 1.08000 * 120.04731 * 0.02635 * 3 2 1 36 36 H 0.96998 * 120.00554 * 359.97438 * 7 5 4 37 37 H 1.09005 * 113.61459 * 334.56793 * 10 8 7 38 38 H 1.09002 * 113.61516 * 203.66505 * 10 8 7 39 39 H 1.08001 * 120.05902 * 359.97438 * 14 13 11 40 40 H 0.97000 * 125.34347 * 179.97438 * 18 17 16 41 41 H 1.08001 * 120.05901 * 179.72516 * 21 15 14 42 42 H 1.08000 * 119.94219 * 179.97438 * 22 21 15 43 43 H 1.07994 * 119.88365 * 180.02562 * 23 22 21 44 44 H 1.09004 * 113.61139 * 89.16323 * 24 11 10 45 45 H 1.09000 * 113.61370 * 220.05499 * 24 11 10 46 46 H 0.96705 * 114.00084 * 90.00135 * 26 25 4 47 47 H 1.08996 * 109.47282 * 45.28658 * 28 27 25 48 48 H 0.96701 * 114.00562 * 300.00240 * 29 28 27 49 49 H 1.48500 * 110.00479 * 180.02562 * 30 28 27 50 50 H 1.48504 * 110.00108 * 301.32256 * 30 28 27 51 51 H 1.08003 * 119.79898 * 179.76331 * 31 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1928 1.1950 0.0000 4 6 3.5899 1.1964 0.0005 5 6 4.3306 2.4725 0.0000 6 8 5.5465 2.4696 0.0009 7 7 3.6594 3.6412 -0.0005 8 6 4.3948 4.9082 -0.0005 9 1 5.4023 4.8128 -0.4055 10 6 3.5999 6.0819 -0.5967 11 6 3.0601 6.3339 0.8211 12 1 2.1473 5.7820 1.0452 13 6 2.9640 7.7944 1.1798 14 6 1.7474 8.3363 1.5411 15 6 1.6599 9.6868 1.8719 16 6 0.3538 10.2752 2.2620 17 7 0.1240 11.5288 2.5984 18 7 -1.1313 11.6412 2.8672 19 7 -1.7039 10.4987 2.7124 20 7 -0.8222 9.6360 2.3357 21 6 2.8023 10.4829 1.8365 22 6 4.0144 9.9306 1.4736 23 6 4.0956 8.5896 1.1462 24 6 4.3357 5.6534 1.3453 25 6 4.2837 -0.0211 -0.0045 26 8 5.6401 -0.0323 -0.0097 27 6 3.5771 -1.2148 0.0005 28 6 4.3173 -2.5274 -0.0001 29 8 4.8554 -2.7702 -1.3014 30 14 3.1443 -3.9019 0.4532 31 6 2.1966 -1.2016 -0.0001 32 1 -0.3633 0.0000 -1.0277 33 1 -0.3634 -0.8900 0.5137 34 1 -0.3634 0.8900 0.5138 35 1 1.6511 2.1294 0.0004 36 1 2.6894 3.6435 -0.0009 37 1 2.8331 5.7737 -1.3075 38 1 4.2288 6.8882 -0.9742 39 1 0.8645 7.7148 1.5666 40 1 -1.5750 12.4583 3.1436 41 1 2.7390 11.5313 2.0878 42 1 4.9007 10.5471 1.4454 43 1 5.0459 8.1614 0.8633 44 1 5.1661 6.3424 1.4998 45 1 4.1621 4.9998 2.2002 46 1 6.0369 -0.0373 0.8722 47 1 5.1284 -2.4874 0.7268 48 1 4.1886 -2.8184 -2.0001 49 1 3.8622 -5.2019 0.4568 50 1 2.5535 -3.6449 1.7912 51 1 1.6509 -2.1337 -0.0001 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_280130_17857610_17914554.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 03:31:37 Heat of formation + Delta-G solvation = 95.829968 kcal Electronic energy + Delta-G solvation = -36952.262288 eV Core-core repulsion = 32015.181299 eV Total energy + Delta-G solvation = -4937.080989 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 408.163 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -45.49846 -41.91749 -41.17211 -40.02699 -38.78383 -38.02330 -37.60412 -35.48007 -34.95084 -34.34954 -33.02278 -32.76891 -31.87243 -31.26404 -27.50254 -26.82673 -26.68055 -26.58152 -25.75317 -25.51084 -24.72378 -23.06730 -22.28004 -21.89010 -21.60008 -20.44418 -19.87702 -19.54480 -18.54664 -18.18190 -18.00453 -17.77539 -17.39426 -16.82152 -16.73836 -16.48061 -16.23613 -16.05514 -15.94528 -15.52867 -15.46051 -15.15312 -15.00716 -14.86557 -14.58442 -14.42437 -14.33940 -14.25066 -14.12074 -13.63102 -13.48290 -13.42515 -13.33139 -13.27996 -12.84841 -12.81452 -12.51689 -12.45713 -12.43670 -12.24723 -12.18067 -12.08831 -12.05772 -11.75917 -11.70249 -11.58093 -11.21906 -10.98251 -10.39768 -10.24287 -9.98970 -9.77294 -9.55580 -9.48648 -5.03501 -0.33710 -0.29540 0.08657 0.14677 0.39526 1.26290 1.30031 1.38704 1.63346 1.71674 1.94239 2.04404 2.56755 2.64520 2.77557 3.13106 3.17282 3.41299 3.48372 3.54775 3.65495 3.71683 3.75686 3.82647 3.95260 4.02793 4.10131 4.13947 4.19173 4.21928 4.26089 4.34856 4.39076 4.43404 4.50709 4.57777 4.63060 4.68700 4.80609 4.83106 4.87439 4.88423 4.94896 5.00500 5.02281 5.05194 5.09268 5.16564 5.21203 5.29491 5.43887 5.44885 5.47871 5.53006 5.57100 5.69117 5.70896 5.94510 6.46240 6.70025 6.76241 7.07648 7.16225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.093 4.093 3 C -0.062 4.062 4 C -0.182 4.182 5 C 0.558 3.442 6 O -0.564 6.564 7 N -0.696 5.696 8 C 0.113 3.887 9 H 0.085 0.915 10 C -0.124 4.124 11 C -0.064 4.064 12 H 0.110 0.890 13 C -0.073 4.073 14 C -0.079 4.079 15 C -0.035 4.035 16 C 0.208 3.792 17 N -0.299 5.299 18 N -0.203 5.203 19 N -0.059 5.059 20 N -0.293 5.293 21 C -0.090 4.090 22 C -0.119 4.119 23 C -0.096 4.096 24 C -0.140 4.140 25 C 0.160 3.840 26 O -0.491 6.491 27 C -0.161 4.161 28 C -0.075 4.075 29 O -0.555 6.555 30 Si 0.790 3.210 31 C -0.070 4.070 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.159 0.841 36 H 0.413 0.587 37 H 0.087 0.913 38 H 0.106 0.894 39 H 0.135 0.865 40 H 0.494 0.506 41 H 0.135 0.865 42 H 0.151 0.849 43 H 0.146 0.854 44 H 0.102 0.898 45 H 0.066 0.934 46 H 0.398 0.602 47 H 0.096 0.904 48 H 0.392 0.608 49 H -0.301 1.301 50 H -0.277 1.277 51 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.757 2.663 0.014 8.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.093 4.093 3 C -0.080 4.080 4 C -0.186 4.186 5 C 0.346 3.654 6 O -0.443 6.443 7 N -0.349 5.349 8 C 0.008 3.992 9 H 0.103 0.897 10 C -0.162 4.162 11 C -0.083 4.083 12 H 0.128 0.872 13 C -0.073 4.073 14 C -0.099 4.099 15 C -0.038 4.038 16 C -0.072 4.072 17 N -0.151 5.151 18 N -0.053 5.053 19 N -0.054 5.054 20 N -0.166 5.166 21 C -0.111 4.111 22 C -0.137 4.137 23 C -0.114 4.114 24 C -0.178 4.178 25 C 0.114 3.886 26 O -0.303 6.303 27 C -0.162 4.162 28 C -0.184 4.184 29 O -0.363 6.363 30 Si 0.694 3.306 31 C -0.088 4.088 32 H 0.106 0.894 33 H 0.101 0.899 34 H 0.099 0.901 35 H 0.177 0.823 36 H 0.252 0.748 37 H 0.106 0.894 38 H 0.124 0.876 39 H 0.153 0.847 40 H 0.353 0.647 41 H 0.153 0.847 42 H 0.168 0.832 43 H 0.164 0.836 44 H 0.120 0.880 45 H 0.085 0.915 46 H 0.257 0.743 47 H 0.114 0.886 48 H 0.242 0.758 49 H -0.229 1.229 50 H -0.203 1.203 51 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -7.267 2.069 0.428 7.568 hybrid contribution 0.715 1.181 0.971 1.688 sum -6.551 3.250 1.400 7.446 Atomic orbital electron populations 1.20935 0.87805 1.04611 1.04071 1.20148 0.98229 0.91700 0.99261 1.21442 0.90899 1.00003 0.95705 1.20421 0.95138 0.92495 1.10497 1.18319 0.86900 0.84364 0.75795 1.90808 1.15016 1.87885 1.50590 1.45469 1.10655 1.04235 1.74503 1.21920 0.96759 0.82605 0.97915 0.89694 1.23404 0.99930 0.96847 0.96020 1.21581 0.99144 0.90899 0.96629 0.87153 1.19697 0.92469 0.95905 0.99247 1.21127 0.98594 0.93090 0.97115 1.17377 0.86929 0.94290 1.05251 1.24021 0.95497 0.86620 1.01045 1.74897 0.99397 1.20653 1.20150 1.47817 1.03469 1.12661 1.41397 1.78879 1.22426 0.90107 1.13966 1.76057 0.98261 1.24555 1.17686 1.21317 0.91572 1.00235 0.97942 1.21357 0.97765 0.95697 0.98871 1.21475 0.99022 0.93591 0.97351 1.23592 0.98242 0.99019 0.96984 1.18586 0.83484 0.90966 0.95584 1.84771 1.15518 1.96094 1.33917 1.20783 0.94939 0.95109 1.05353 1.25269 1.04127 1.00013 0.88952 1.86532 1.38608 1.94256 1.16857 0.93823 0.80951 0.73010 0.82829 1.21313 0.91731 0.99503 0.96215 0.89368 0.89875 0.90091 0.82341 0.74844 0.89429 0.87582 0.84730 0.64744 0.84717 0.83165 0.83631 0.87989 0.91503 0.74272 0.88638 0.75817 1.22871 1.20326 0.81898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 1.27 10.00 71.24 0.71 1.98 16 2 C -0.09 0.51 5.87 -19.90 -0.12 0.39 16 3 C -0.06 0.23 9.18 22.52 0.21 0.43 16 4 C -0.18 -0.67 5.89 -20.01 -0.12 -0.79 16 5 C 0.56 3.73 7.76 86.70 0.67 4.41 16 6 O -0.56 -8.72 14.76 16.93 0.25 -8.47 16 7 N -0.70 0.73 5.21 -442.92 -2.31 -1.58 16 8 C 0.11 -0.15 4.33 45.58 0.20 0.05 16 9 H 0.08 0.31 7.46 -2.39 -0.02 0.29 16 10 C -0.12 0.72 7.29 31.12 0.23 0.94 16 11 C -0.06 0.35 3.85 -11.01 -0.04 0.30 16 12 H 0.11 -0.82 8.08 -2.39 -0.02 -0.84 16 13 C -0.07 0.18 5.29 -19.90 -0.11 0.07 16 14 C -0.08 -0.06 9.36 22.47 0.21 0.15 16 15 C -0.04 -0.11 5.88 -20.04 -0.12 -0.22 16 16 C 0.21 1.15 7.94 137.38 1.09 2.25 16 17 N -0.30 -0.90 12.08 -52.13 -0.63 -1.53 16 18 N -0.20 0.26 7.90 37.02 0.29 0.55 16 19 N -0.06 -0.26 13.47 37.02 0.50 0.24 16 20 N -0.29 -2.16 12.23 -52.18 -0.64 -2.80 16 21 C -0.09 -0.03 9.70 22.48 0.22 0.19 16 22 C -0.12 0.33 10.03 22.24 0.22 0.55 16 23 C -0.10 0.34 8.53 22.31 0.19 0.53 16 24 C -0.14 0.44 7.27 31.18 0.23 0.67 16 25 C 0.16 1.04 6.69 22.84 0.15 1.19 16 26 O -0.49 -5.27 10.91 -68.77 -0.75 -6.02 16 27 C -0.16 -0.24 5.27 -19.80 -0.10 -0.34 16 28 C -0.08 -0.13 2.37 71.23 0.17 0.04 16 29 O -0.55 -2.44 12.88 -148.98 -1.92 -4.36 16 30 Si 0.79 -2.24 29.91 68.60 2.05 -0.19 16 31 C -0.07 0.29 8.30 22.30 0.19 0.48 16 32 H 0.09 -1.07 8.14 -2.39 -0.02 -1.09 16 33 H 0.08 -1.01 8.08 -2.39 -0.02 -1.03 16 34 H 0.08 -0.98 8.08 -2.39 -0.02 -1.00 16 35 H 0.16 -1.62 6.40 -2.91 -0.02 -1.64 16 36 H 0.41 -3.03 6.73 -92.71 -0.62 -3.65 16 37 H 0.09 -0.62 8.14 -2.38 -0.02 -0.64 16 38 H 0.11 -0.69 7.64 -2.39 -0.02 -0.71 16 39 H 0.13 0.01 7.88 -2.91 -0.02 -0.01 16 40 H 0.49 -5.32 8.96 -347.54 -3.12 -8.44 16 41 H 0.13 -0.12 7.88 -2.91 -0.02 -0.14 16 42 H 0.15 -1.05 8.06 -2.91 -0.02 -1.08 16 43 H 0.15 -1.04 6.71 -2.91 -0.02 -1.06 16 44 H 0.10 -0.44 6.39 -2.39 -0.02 -0.45 16 45 H 0.07 -0.07 8.14 -2.39 -0.02 -0.09 16 46 H 0.40 1.86 9.06 -74.05 -0.67 1.19 16 47 H 0.10 0.37 7.83 -2.39 -0.02 0.36 16 48 H 0.39 -1.75 8.70 -74.06 -0.64 -2.40 16 49 H -0.30 -1.59 7.11 99.48 0.71 -0.89 16 50 H -0.28 -0.22 7.11 99.48 0.71 0.49 16 51 H 0.16 -1.69 5.10 -2.91 -0.01 -1.70 16 Total: 0.00 -32.38 427.85 -3.02 -35.40 By element: Atomic # 1 Polarization: -20.56 SS G_CDS: -3.95 Total: -24.51 kcal Atomic # 6 Polarization: 9.19 SS G_CDS: 4.08 Total: 13.27 kcal Atomic # 7 Polarization: -2.33 SS G_CDS: -2.79 Total: -5.12 kcal Atomic # 8 Polarization: -16.43 SS G_CDS: -2.42 Total: -18.85 kcal Atomic # 14 Polarization: -2.24 SS G_CDS: 2.05 Total: -0.19 kcal Total: -32.38 -3.02 -35.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_280130_17857610_17914554.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.235 kcal (2) G-P(sol) polarization free energy of solvation -32.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds