Wall clock time and date at job start Sat Mar 6 2021 03:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38970 * 119.95580 * 2 1 4 4 O 1.35712 * 119.91422 * 359.97438 * 3 2 1 5 5 C 1.39016 * 120.17547 * 179.97438 * 3 2 1 6 6 C 1.50703 * 119.95783 * 180.02562 * 5 3 2 7 7 O 1.42894 * 109.47495 * 74.99379 * 6 5 3 8 8 Si 1.86298 * 109.47203 * 195.00086 * 6 5 3 9 9 C 1.37685 * 120.09083 * 359.73822 * 5 3 2 10 10 C 1.39751 * 119.90573 * 0.49398 * 9 5 3 11 11 C 1.47609 * 120.08790 * 179.78354 * 10 9 5 12 12 O 1.21587 * 119.99859 * 359.72872 * 11 10 9 13 13 N 1.34776 * 119.99939 * 179.72059 * 11 10 9 14 14 C 1.46505 * 119.99677 * 180.02562 * 13 11 10 15 15 H 1.08997 * 112.84844 * 336.19389 * 14 13 11 16 16 C 1.53954 * 113.61324 * 107.46666 * 14 13 11 17 17 C 1.53781 * 87.01637 * 89.19843 * 16 14 13 18 18 H 1.08996 * 113.61621 * 270.76939 * 17 16 14 19 19 C 1.50700 * 113.61206 * 139.95066 * 17 16 14 20 20 C 1.38007 * 119.94211 * 140.86430 * 19 17 16 21 21 C 1.39319 * 119.88339 * 179.97438 * 20 19 17 22 22 C 1.48459 * 120.11911 * 180.02562 * 21 20 19 23 23 N 1.31817 * 126.67413 * 179.68797 * 22 21 20 24 24 N 1.28875 * 107.81642 * 179.83456 * 23 22 21 25 25 N 1.28729 * 109.31782 * 0.43413 * 24 23 22 26 26 N 1.28989 * 108.94639 * 359.72839 * 25 24 23 27 27 C 1.39285 * 119.76532 * 359.97438 * 21 20 19 28 28 C 1.38052 * 119.88073 * 0.02562 * 27 21 20 29 29 C 1.38288 * 120.11702 * 359.97438 * 28 27 21 30 30 C 1.53775 * 87.17579 * 25.36028 * 17 16 14 31 31 C 1.37719 * 119.95370 * 179.97438 * 2 1 3 32 32 H 1.09001 * 109.47393 * 270.02571 * 1 2 3 33 33 H 1.08996 * 109.47155 * 30.02377 * 1 2 3 34 34 H 1.08997 * 109.47076 * 150.02176 * 1 2 3 35 35 H 0.96702 * 113.99876 * 89.99979 * 4 3 2 36 36 H 1.09009 * 109.46909 * 314.99731 * 6 5 3 37 37 H 0.96706 * 113.99621 * 60.00266 * 7 6 5 38 38 H 1.48499 * 110.00324 * 58.67543 * 8 6 5 39 39 H 1.48502 * 110.00062 * 179.97438 * 8 6 5 40 40 H 1.08004 * 120.04714 * 180.25053 * 9 5 3 41 41 H 0.96996 * 120.00578 * 0.02562 * 13 11 10 42 42 H 1.08998 * 113.66895 * 334.66854 * 16 14 13 43 43 H 1.09003 * 113.61040 * 203.71584 * 16 14 13 44 44 H 1.08000 * 120.05722 * 359.97438 * 20 19 17 45 45 H 0.97000 * 125.34422 * 180.17045 * 24 23 22 46 46 H 1.08001 * 120.05901 * 179.72516 * 27 21 20 47 47 H 1.08000 * 119.94219 * 179.97438 * 28 27 21 48 48 H 1.07995 * 119.88385 * 179.97438 * 29 28 27 49 49 H 1.08999 * 113.61592 * 89.15704 * 30 17 16 50 50 H 1.08997 * 113.61719 * 220.05807 * 30 17 16 51 51 H 1.08006 * 120.04799 * 359.97321 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2009 1.2041 0.0000 4 8 1.5197 2.3778 -0.0005 5 6 3.5911 1.2094 0.0005 6 6 4.3386 2.5179 0.0011 7 8 4.2715 3.1043 1.3025 8 14 6.1199 2.2157 -0.4529 9 6 4.2859 0.0208 0.0065 10 6 3.5918 -1.1922 0.0016 11 6 4.3327 -2.4688 0.0032 12 8 5.5486 -2.4660 0.0037 13 7 3.6615 -3.6375 0.0041 14 6 4.3969 -4.9046 0.0062 15 1 5.4045 -4.8098 -0.3986 16 6 4.3393 -5.6488 1.3527 17 6 3.0637 -6.3303 0.8299 18 1 2.1507 -5.7788 1.0544 19 6 2.9687 -7.7906 1.1897 20 6 1.7526 -8.3330 1.5524 21 6 1.6661 -9.6833 1.8842 22 6 0.3604 -10.2723 2.2745 23 7 0.1304 -11.5273 2.6059 24 7 -1.1237 -11.6390 2.8809 25 7 -1.6971 -10.4970 2.7256 26 7 -0.8150 -9.6327 2.3530 27 6 2.8087 -10.4790 1.8475 28 6 4.0202 -9.9263 1.4833 29 6 4.1005 -8.5854 1.1549 30 6 3.6021 -6.0791 -0.5884 31 6 2.1946 -1.1932 0.0005 32 1 -0.3634 0.0005 1.0277 33 1 -0.3633 0.8897 -0.5142 34 1 -0.3633 -0.8902 -0.5135 35 1 1.3219 2.7182 0.8827 36 1 3.8881 3.1941 -0.7257 37 1 4.6550 2.5564 2.0010 38 1 6.2018 1.5769 -1.7909 39 1 6.8679 3.4986 -0.4565 40 1 5.3659 0.0257 0.0110 41 1 2.6915 -3.6398 0.0034 42 1 4.1661 -4.9947 2.2072 43 1 5.1702 -6.3373 1.5069 44 1 0.8695 -7.7118 1.5789 45 1 -1.5668 -12.4563 3.1576 46 1 2.7479 -11.5253 2.1081 47 1 4.9069 -10.5423 1.4549 48 1 5.0502 -8.1569 0.8709 49 1 4.2311 -6.8853 -0.9658 50 1 2.8346 -5.7718 -1.2988 51 1 1.6546 -2.1286 0.0014 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_280130_17857610_17915012.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 03:31:41 Heat of formation + Delta-G solvation = 93.395359 kcal Electronic energy + Delta-G solvation = -36778.530647 eV Core-core repulsion = 31841.344085 eV Total energy + Delta-G solvation = -4937.186561 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 408.163 amu Computer time = 1.91 seconds Orbital eigenvalues (eV) -45.48735 -41.86344 -41.19984 -40.21755 -38.85968 -37.83432 -37.45905 -35.47368 -34.95584 -34.32380 -33.92100 -32.24199 -31.66005 -31.10311 -27.98088 -26.99256 -26.62472 -26.43438 -25.66517 -25.49361 -24.54745 -23.04424 -22.28642 -21.92158 -21.57903 -20.42050 -19.81695 -19.50622 -18.81492 -18.17266 -18.10833 -17.87091 -17.27547 -16.77122 -16.60231 -16.40600 -16.26265 -16.10889 -15.98977 -15.72044 -15.42820 -15.19509 -15.03981 -14.70846 -14.55373 -14.40280 -14.35841 -14.18425 -14.12187 -13.85771 -13.44731 -13.40724 -13.29060 -13.27974 -12.92825 -12.80480 -12.75355 -12.43863 -12.41872 -12.34176 -12.23311 -12.22062 -12.03469 -11.70649 -11.61265 -11.54200 -11.17031 -11.07881 -10.49051 -10.14847 -9.94935 -9.74776 -9.63955 -9.52289 -5.06159 -0.38850 -0.27693 0.08728 0.15738 0.42192 1.20994 1.31752 1.39558 1.54276 1.64534 1.87054 2.03956 2.57505 2.66028 2.80285 3.14431 3.14739 3.39849 3.52393 3.55214 3.59221 3.72877 3.75882 3.80708 3.98782 4.03721 4.07095 4.12412 4.18933 4.24184 4.29251 4.37345 4.40522 4.44862 4.46376 4.60451 4.64102 4.72417 4.74195 4.81499 4.85993 4.90509 4.92242 5.05130 5.06180 5.09659 5.11311 5.12646 5.21034 5.23031 5.33671 5.46322 5.50314 5.54832 5.58127 5.61343 5.72970 5.97431 6.47354 6.69179 6.72516 7.08540 7.14895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.122 4.122 3 C 0.153 3.847 4 O -0.500 6.500 5 C -0.159 4.159 6 C -0.052 4.052 7 O -0.547 6.547 8 Si 0.749 3.251 9 C -0.055 4.055 10 C -0.150 4.150 11 C 0.563 3.437 12 O -0.571 6.571 13 N -0.695 5.695 14 C 0.114 3.886 15 H 0.091 0.909 16 C -0.139 4.139 17 C -0.067 4.067 18 H 0.109 0.891 19 C -0.073 4.073 20 C -0.080 4.080 21 C -0.036 4.036 22 C 0.208 3.792 23 N -0.299 5.299 24 N -0.203 5.203 25 N -0.059 5.059 26 N -0.294 5.294 27 C -0.091 4.091 28 C -0.119 4.119 29 C -0.095 4.095 30 C -0.126 4.126 31 C -0.055 4.055 32 H 0.085 0.915 33 H 0.067 0.933 34 H 0.084 0.916 35 H 0.413 0.587 36 H 0.107 0.893 37 H 0.395 0.605 38 H -0.297 1.297 39 H -0.287 1.287 40 H 0.143 0.857 41 H 0.414 0.586 42 H 0.069 0.931 43 H 0.103 0.897 44 H 0.134 0.866 45 H 0.494 0.506 46 H 0.134 0.866 47 H 0.151 0.849 48 H 0.148 0.852 49 H 0.106 0.894 50 H 0.085 0.915 51 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.521 -5.640 3.005 6.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.122 4.122 3 C 0.107 3.893 4 O -0.314 6.314 5 C -0.160 4.160 6 C -0.163 4.163 7 O -0.355 6.355 8 Si 0.655 3.345 9 C -0.073 4.073 10 C -0.153 4.153 11 C 0.351 3.649 12 O -0.451 6.451 13 N -0.347 5.347 14 C 0.008 3.992 15 H 0.109 0.891 16 C -0.178 4.178 17 C -0.085 4.085 18 H 0.128 0.872 19 C -0.073 4.073 20 C -0.100 4.100 21 C -0.040 4.040 22 C -0.072 4.072 23 N -0.151 5.151 24 N -0.054 5.054 25 N -0.054 5.054 26 N -0.166 5.166 27 C -0.112 4.112 28 C -0.137 4.137 29 C -0.113 4.113 30 C -0.164 4.164 31 C -0.073 4.073 32 H 0.104 0.896 33 H 0.086 0.914 34 H 0.103 0.897 35 H 0.273 0.727 36 H 0.124 0.876 37 H 0.245 0.755 38 H -0.224 1.224 39 H -0.214 1.214 40 H 0.160 0.840 41 H 0.252 0.748 42 H 0.088 0.912 43 H 0.122 0.878 44 H 0.152 0.848 45 H 0.352 0.648 46 H 0.152 0.848 47 H 0.168 0.832 48 H 0.166 0.834 49 H 0.124 0.876 50 H 0.104 0.896 51 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -1.982 -5.062 1.653 5.682 hybrid contribution -0.913 -0.330 0.333 1.026 sum -2.894 -5.392 1.986 6.434 Atomic orbital electron populations 1.20765 0.88428 1.04021 1.03688 1.20435 0.98264 0.91798 1.01718 1.18491 0.88831 0.85880 0.96067 1.84625 1.75567 1.35823 1.35411 1.20614 0.94199 0.95710 1.05494 1.24785 1.09099 0.93000 0.89429 1.86473 1.84807 1.47847 1.16324 0.94015 0.75796 0.80520 0.84149 1.21007 1.00059 0.90579 0.95678 1.19825 0.94246 0.92782 1.08447 1.18288 0.86808 0.84337 0.75428 1.90790 1.14934 1.87994 1.51369 1.45482 1.10796 1.04367 1.74034 1.21949 0.96904 0.82412 0.97909 0.89052 1.23594 0.98047 0.99031 0.97085 1.21608 0.99351 0.90808 0.96760 0.87242 1.19721 0.92393 0.96029 0.99134 1.21135 0.98669 0.93050 0.97178 1.17384 0.86915 0.94329 1.05327 1.24047 0.95547 0.86529 1.01038 1.74902 0.99469 1.20648 1.20121 1.47819 1.03536 1.12688 1.41326 1.78879 1.22397 0.90131 1.14025 1.76060 0.98268 1.24507 1.17770 1.21313 0.91625 1.00195 0.98019 1.21364 0.97693 0.95772 0.98883 1.21487 0.99075 0.93508 0.97239 1.23411 0.99983 0.97034 0.95951 1.21376 0.91815 0.98933 0.95202 0.89596 0.91396 0.89671 0.72664 0.87562 0.75488 1.22383 1.21406 0.83988 0.74773 0.91180 0.87845 0.84842 0.64763 0.84826 0.83157 0.83390 0.87556 0.89603 0.81988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.66 9.78 71.24 0.70 1.35 16 2 C -0.12 0.27 5.89 -19.81 -0.12 0.16 16 3 C 0.15 0.13 6.66 22.63 0.15 0.28 16 4 O -0.50 -0.19 11.84 -90.33 -1.07 -1.26 16 5 C -0.16 -0.25 5.27 -19.81 -0.10 -0.36 16 6 C -0.05 -0.09 2.37 71.24 0.17 0.08 16 7 O -0.55 0.06 12.88 -148.98 -1.92 -1.86 16 8 Si 0.75 1.75 29.92 68.60 2.05 3.80 16 9 C -0.05 -0.12 8.20 22.50 0.18 0.07 16 10 C -0.15 -0.10 5.88 -20.08 -0.12 -0.22 16 11 C 0.56 1.56 7.76 86.72 0.67 2.24 16 12 O -0.57 -6.00 15.94 -3.99 -0.06 -6.07 16 13 N -0.70 2.69 5.21 -442.84 -2.31 0.38 16 14 C 0.11 -0.46 4.33 45.57 0.20 -0.26 16 15 H 0.09 0.00 7.46 -2.39 -0.02 -0.02 16 16 C -0.14 0.76 7.27 31.18 0.23 0.99 16 17 C -0.07 0.46 3.85 -11.02 -0.04 0.42 16 18 H 0.11 -0.95 8.08 -2.39 -0.02 -0.97 16 19 C -0.07 0.26 5.29 -19.89 -0.11 0.15 16 20 C -0.08 -0.01 9.36 22.48 0.21 0.20 16 21 C -0.04 -0.09 5.88 -20.04 -0.12 -0.21 16 22 C 0.21 1.10 7.94 137.38 1.09 2.19 16 23 N -0.30 -0.85 12.08 -52.13 -0.63 -1.48 16 24 N -0.20 0.28 7.90 37.02 0.29 0.57 16 25 N -0.06 -0.26 13.47 37.02 0.50 0.24 16 26 N -0.29 -2.12 12.24 -52.18 -0.64 -2.76 16 27 C -0.09 0.02 9.70 22.48 0.22 0.24 16 28 C -0.12 0.44 10.03 22.24 0.22 0.66 16 29 C -0.09 0.45 8.53 22.31 0.19 0.64 16 30 C -0.13 0.95 7.29 31.12 0.23 1.18 16 31 C -0.05 0.22 9.18 22.50 0.21 0.43 16 32 H 0.09 -0.68 8.14 -2.39 -0.02 -0.70 16 33 H 0.07 -0.23 7.52 -2.39 -0.02 -0.25 16 34 H 0.08 -0.71 8.08 -2.39 -0.02 -0.73 16 35 H 0.41 -2.77 9.06 -74.06 -0.67 -3.44 16 36 H 0.11 0.45 7.82 -2.38 -0.02 0.43 16 37 H 0.40 -3.15 8.70 -74.05 -0.64 -3.79 16 38 H -0.30 -2.73 7.11 99.48 0.71 -2.02 16 39 H -0.29 -2.37 7.11 99.48 0.71 -1.67 16 40 H 0.14 0.27 4.71 -2.91 -0.01 0.26 16 41 H 0.41 -3.98 6.73 -92.71 -0.62 -4.61 16 42 H 0.07 -0.25 8.14 -2.39 -0.02 -0.27 16 43 H 0.10 -0.69 6.39 -2.39 -0.02 -0.71 16 44 H 0.13 -0.05 7.88 -2.91 -0.02 -0.07 16 45 H 0.49 -5.35 8.96 -347.53 -3.12 -8.47 16 46 H 0.13 -0.17 7.88 -2.91 -0.02 -0.19 16 47 H 0.15 -1.19 8.06 -2.91 -0.02 -1.21 16 48 H 0.15 -1.30 6.71 -2.91 -0.02 -1.32 16 49 H 0.11 -0.88 7.63 -2.39 -0.02 -0.89 16 50 H 0.09 -0.73 8.14 -2.39 -0.02 -0.75 16 51 H 0.16 -1.77 6.39 -2.91 -0.02 -1.79 16 Total: 0.00 -27.70 428.63 -3.67 -31.37 By element: Atomic # 1 Polarization: -29.21 SS G_CDS: -3.95 Total: -33.16 kcal Atomic # 6 Polarization: 6.16 SS G_CDS: 4.06 Total: 10.22 kcal Atomic # 7 Polarization: -0.26 SS G_CDS: -2.79 Total: -3.05 kcal Atomic # 8 Polarization: -6.14 SS G_CDS: -3.05 Total: -9.19 kcal Atomic # 14 Polarization: 1.75 SS G_CDS: 2.05 Total: 3.80 kcal Total: -27.70 -3.67 -31.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_280130_17857610_17915012.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.766 kcal (2) G-P(sol) polarization free energy of solvation -27.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.91 seconds