Wall clock time and date at job start Sat Mar 6 2021 03:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.37937 * 120.07310 * 2 1 4 4 C 1.38375 * 120.14287 * 180.27624 * 3 2 1 5 5 C 1.50704 * 119.85076 * 179.72269 * 4 3 2 6 6 C 1.38333 * 120.29534 * 359.74183 * 4 3 2 7 7 C 1.50705 * 119.92790 * 179.97438 * 6 4 3 8 8 O 1.42894 * 109.46983 * 285.02263 * 7 6 4 9 9 Si 1.86304 * 109.46881 * 165.02032 * 7 6 4 10 10 C 1.37977 * 120.14550 * 0.02562 * 6 4 3 11 11 C 1.39555 * 119.85029 * 359.97438 * 10 6 4 12 12 C 1.47848 * 120.14554 * 179.97438 * 11 10 6 13 13 O 1.21554 * 120.00252 * 173.75676 * 12 11 10 14 14 N 1.34781 * 119.99638 * 353.75789 * 12 11 10 15 15 C 1.46498 * 119.99746 * 179.97438 * 14 12 11 16 16 H 1.09003 * 112.85144 * 336.20128 * 15 14 12 17 17 C 1.53781 * 113.61367 * 107.50561 * 15 14 12 18 18 C 1.53780 * 87.08307 * 89.11594 * 17 15 14 19 19 H 1.09001 * 113.68980 * 270.87772 * 18 17 15 20 20 C 1.50698 * 113.61741 * 139.98219 * 18 17 15 21 21 C 1.38010 * 119.94248 * 142.50569 * 20 18 17 22 22 C 1.39316 * 119.88069 * 180.02562 * 21 20 18 23 23 C 1.48465 * 120.11740 * 180.02562 * 22 21 20 24 24 N 1.31808 * 126.67222 * 179.68434 * 23 22 21 25 25 N 1.28874 * 107.81632 * 179.83912 * 24 23 22 26 26 N 1.28732 * 109.31619 * 0.43612 * 25 24 23 27 27 N 1.28982 * 108.94169 * 359.72751 * 26 25 24 28 28 C 1.39284 * 119.76591 * 359.97438 * 22 21 20 29 29 C 1.38050 * 119.88344 * 0.02562 * 28 22 21 30 30 C 1.38290 * 120.11439 * 359.97438 * 29 28 22 31 31 C 1.53784 * 113.61791 * 205.00360 * 15 14 12 32 32 H 1.08993 * 109.47062 * 263.62409 * 1 2 3 33 33 H 1.08999 * 109.46965 * 23.62935 * 1 2 3 34 34 H 1.09002 * 109.46552 * 143.62507 * 1 2 3 35 35 H 1.08000 * 119.92391 * 0.02562 * 3 2 1 36 36 H 1.09004 * 109.46984 * 270.02067 * 5 4 3 37 37 H 1.09002 * 109.47552 * 30.01713 * 5 4 3 38 38 H 1.08999 * 109.47187 * 150.02473 * 5 4 3 39 39 H 1.09005 * 109.46801 * 45.02312 * 7 6 4 40 40 H 0.96698 * 114.00234 * 60.00652 * 8 7 6 41 41 H 1.48504 * 109.99778 * 178.68115 * 9 7 6 42 42 H 1.48500 * 110.00366 * 300.00209 * 9 7 6 43 43 H 1.08004 * 120.07840 * 179.97438 * 10 6 4 44 44 H 0.97002 * 120.00244 * 0.02562 * 14 12 11 45 45 H 1.09003 * 113.61612 * 334.56718 * 17 15 14 46 46 H 1.08996 * 113.61597 * 203.66425 * 17 15 14 47 47 H 1.07993 * 120.05528 * 0.04192 * 21 20 18 48 48 H 0.97004 * 125.34323 * 180.17232 * 25 24 23 49 49 H 1.08000 * 120.05866 * 179.72580 * 28 22 21 50 50 H 1.08001 * 119.94555 * 179.97438 * 29 28 22 51 51 H 1.08003 * 119.88380 * 179.97438 * 30 29 28 52 52 H 1.08992 * 113.61909 * 156.33834 * 31 15 14 53 53 H 1.09006 * 113.61176 * 25.43019 * 31 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1937 0.0000 4 6 3.5820 1.1954 -0.0058 5 6 4.3305 2.5034 -0.0121 6 6 4.2813 0.0018 -0.0062 7 6 5.7883 0.0133 -0.0131 8 8 6.2560 0.3631 -1.3172 9 14 6.4243 -1.6776 0.4420 10 6 3.6021 -1.1992 -0.0014 11 6 2.2066 -1.2080 0.0045 12 6 1.4722 -2.4912 0.0091 13 8 0.2626 -2.4988 0.1286 14 7 2.1441 -3.6525 -0.1193 15 6 1.4164 -4.9240 -0.1142 16 1 0.4538 -4.8588 0.3930 17 6 1.3431 -5.5973 -1.4948 18 6 2.6677 -6.2928 -1.1389 19 1 3.5519 -5.7220 -1.4224 20 6 2.7325 -7.7314 -1.5828 21 6 3.9177 -8.2517 -2.0617 22 6 3.9761 -9.5817 -2.4722 23 6 5.2485 -10.1471 -2.9877 24 7 5.4503 -11.3817 -3.4029 25 7 6.6808 -11.4769 -3.7736 26 7 7.2673 -10.3444 -3.5979 27 7 6.4169 -9.5029 -3.1159 28 6 2.8369 -10.3795 -2.3964 29 6 1.6564 -9.8490 -1.9159 30 6 1.6040 -8.5281 -1.5097 31 6 2.2705 -6.1208 0.3368 32 1 -0.3633 -0.1141 1.0212 33 1 -0.3633 0.9415 -0.4119 34 1 -0.3632 -0.8275 -0.6095 35 1 1.6583 2.1290 0.0004 36 1 4.5064 2.8164 -1.0413 37 1 3.7409 3.2620 0.5027 38 1 5.2858 2.3778 0.4977 39 1 6.1494 0.7442 0.7106 40 1 5.9627 1.2334 -1.6199 41 1 7.9089 -1.6880 0.4078 42 1 5.9448 -2.0532 1.7963 43 1 4.1492 -2.1304 -0.0021 44 1 3.1094 -3.6465 -0.2143 45 1 1.4269 -4.8980 -2.3267 46 1 0.5039 -6.2847 -1.6013 47 1 4.7983 -7.6291 -2.1177 48 1 7.1005 -12.2774 -4.1259 49 1 2.8757 -11.4099 -2.7176 50 1 0.7724 -10.4666 -1.8571 51 1 0.6784 -8.1168 -1.1347 52 1 1.6849 -6.9512 0.7310 53 1 3.1030 -5.8439 0.9837 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_280130_17857610_17915580.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 03:31:46 Heat of formation + Delta-G solvation = 135.799108 kcal Electronic energy + Delta-G solvation = -37081.099996 eV Core-core repulsion = 32308.896773 eV Total energy + Delta-G solvation = -4772.203224 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 406.179 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -45.47234 -41.86950 -41.06151 -40.00755 -38.83603 -37.55973 -35.47168 -35.06820 -34.42556 -34.30399 -33.17829 -31.92953 -31.32256 -29.32411 -28.57221 -26.60770 -26.37161 -25.67026 -25.47889 -25.31537 -23.76099 -23.03199 -22.85214 -21.92092 -21.02259 -20.37192 -19.74208 -18.91125 -18.29350 -18.15680 -17.87980 -17.15447 -16.69436 -16.43208 -16.40246 -16.31273 -16.12757 -15.97527 -15.53660 -15.25897 -15.13740 -14.91541 -14.78068 -14.57591 -14.47549 -14.37353 -14.12134 -14.08401 -13.84113 -13.46600 -13.41733 -13.34539 -13.23475 -12.96754 -12.77097 -12.73062 -12.68844 -12.53319 -12.42013 -12.38607 -12.21205 -12.12818 -12.01592 -11.65802 -11.51580 -11.34365 -11.19874 -11.14308 -10.66492 -10.11907 -9.87461 -9.72601 -9.60964 -9.50290 -4.96694 -0.25933 -0.25742 0.17488 0.18153 0.44381 1.33723 1.34815 1.40952 1.58345 1.75823 1.94405 2.08500 2.65674 2.67808 2.82362 3.16326 3.47079 3.53620 3.57151 3.65819 3.78450 3.79121 3.82686 3.84323 4.00568 4.08219 4.09880 4.13472 4.14566 4.25723 4.31667 4.38607 4.42329 4.48071 4.51078 4.54224 4.62719 4.67472 4.70931 4.74488 4.81131 4.87795 4.87929 4.92759 4.96486 5.05508 5.08786 5.09604 5.13686 5.15139 5.22665 5.28064 5.43659 5.48318 5.50907 5.52372 5.59371 5.60784 5.75902 5.80561 5.99431 6.49746 6.60624 7.10345 7.18500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.028 4.028 3 C -0.133 4.133 4 C -0.043 4.043 5 C -0.131 4.131 6 C -0.137 4.137 7 C -0.083 4.083 8 O -0.545 6.545 9 Si 0.789 3.211 10 C -0.065 4.065 11 C -0.157 4.157 12 C 0.560 3.440 13 O -0.560 6.560 14 N -0.700 5.700 15 C 0.115 3.885 16 H 0.092 0.908 17 C -0.140 4.140 18 C -0.069 4.069 19 H 0.112 0.888 20 C -0.072 4.072 21 C -0.080 4.080 22 C -0.037 4.037 23 C 0.209 3.791 24 N -0.300 5.300 25 N -0.204 5.204 26 N -0.059 5.059 27 N -0.293 5.293 28 C -0.091 4.091 29 C -0.120 4.120 30 C -0.095 4.095 31 C -0.127 4.127 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.148 0.852 36 H 0.095 0.905 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.375 0.625 41 H -0.295 1.295 42 H -0.261 1.261 43 H 0.148 0.852 44 H 0.412 0.588 45 H 0.067 0.933 46 H 0.104 0.896 47 H 0.136 0.864 48 H 0.493 0.507 49 H 0.134 0.866 50 H 0.150 0.850 51 H 0.148 0.852 52 H 0.107 0.893 53 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.078 -1.039 -0.471 1.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.029 4.029 3 C -0.151 4.151 4 C -0.044 4.044 5 C -0.187 4.187 6 C -0.138 4.138 7 C -0.191 4.191 8 O -0.352 6.352 9 Si 0.692 3.308 10 C -0.084 4.084 11 C -0.160 4.160 12 C 0.349 3.651 13 O -0.440 6.440 14 N -0.351 5.351 15 C 0.009 3.991 16 H 0.110 0.890 17 C -0.179 4.179 18 C -0.088 4.088 19 H 0.130 0.870 20 C -0.072 4.072 21 C -0.100 4.100 22 C -0.040 4.040 23 C -0.070 4.070 24 N -0.152 5.152 25 N -0.054 5.054 26 N -0.054 5.054 27 N -0.166 5.166 28 C -0.112 4.112 29 C -0.138 4.138 30 C -0.113 4.113 31 C -0.164 4.164 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.165 0.835 36 H 0.113 0.887 37 H 0.101 0.899 38 H 0.094 0.906 39 H 0.102 0.898 40 H 0.225 0.775 41 H -0.222 1.222 42 H -0.187 1.187 43 H 0.165 0.835 44 H 0.250 0.750 45 H 0.086 0.914 46 H 0.122 0.878 47 H 0.153 0.847 48 H 0.352 0.648 49 H 0.152 0.848 50 H 0.168 0.832 51 H 0.166 0.834 52 H 0.125 0.875 53 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.653 -2.096 0.034 2.196 hybrid contribution 0.251 0.999 0.049 1.031 sum 0.904 -1.097 0.082 1.424 Atomic orbital electron populations 1.21017 0.90012 1.03289 1.03053 1.20246 0.97061 0.91997 0.93598 1.21183 0.93629 0.98037 1.02275 1.20251 0.93770 0.95783 0.94572 1.21073 1.00424 0.92968 1.04193 1.20138 0.96335 0.93178 1.04125 1.25513 0.91838 1.13252 0.88490 1.86757 1.75856 1.41078 1.31508 0.92408 0.77675 0.79515 0.81242 1.21177 0.92513 0.98009 0.96652 1.19713 0.93636 0.93084 1.09576 1.18370 0.86767 0.84294 0.75676 1.90734 1.14992 1.87461 1.50832 1.45553 1.11345 1.04748 1.73491 1.21902 0.96768 0.82335 0.98053 0.89007 1.23569 0.97881 0.99362 0.97046 1.21645 0.99375 0.91231 0.96501 0.86953 1.19710 0.92652 0.96087 0.98724 1.21157 0.98861 0.93282 0.96686 1.17390 0.87724 0.94792 1.04112 1.24033 0.95541 0.86798 1.00664 1.74895 1.00743 1.21010 1.18580 1.47818 1.04633 1.13415 1.39544 1.78882 1.22125 0.90827 1.13592 1.76060 0.99273 1.24529 1.16712 1.21304 0.91738 1.00051 0.98063 1.21355 0.97919 0.95973 0.98505 1.21488 0.98841 0.93509 0.97500 1.23427 1.00264 0.97056 0.95695 0.91244 0.90781 0.90280 0.83476 0.88702 0.89929 0.90594 0.89823 0.77549 1.22209 1.18684 0.83478 0.75025 0.91389 0.87821 0.84658 0.64794 0.84849 0.83198 0.83439 0.87497 0.89452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.50 8.73 71.24 0.62 0.12 16 2 C -0.03 -0.11 5.91 -19.61 -0.12 -0.22 16 3 C -0.13 -0.05 9.31 22.23 0.21 0.16 16 4 C -0.04 0.05 5.87 -19.81 -0.12 -0.06 16 5 C -0.13 0.81 8.73 71.24 0.62 1.43 16 6 C -0.14 0.06 5.26 -19.90 -0.10 -0.04 16 7 C -0.08 0.12 2.09 71.24 0.15 0.27 16 8 O -0.54 0.22 12.65 -148.98 -1.89 -1.66 16 9 Si 0.79 -1.17 30.17 68.60 2.07 0.89 16 10 C -0.07 0.03 8.13 22.53 0.18 0.21 16 11 C -0.16 -0.52 5.87 -20.09 -0.12 -0.64 16 12 C 0.56 2.65 7.70 86.79 0.67 3.32 16 13 O -0.56 -6.20 12.95 -3.89 -0.05 -6.25 16 14 N -0.70 1.19 5.21 -442.89 -2.31 -1.12 16 15 C 0.11 -0.32 4.32 45.52 0.20 -0.12 16 16 H 0.09 0.09 7.46 -2.39 -0.02 0.07 16 17 C -0.14 0.59 7.25 31.12 0.23 0.81 16 18 C -0.07 0.40 3.85 -11.01 -0.04 0.35 16 19 H 0.11 -0.85 8.09 -2.39 -0.02 -0.87 16 20 C -0.07 0.19 5.28 -19.89 -0.11 0.09 16 21 C -0.08 -0.07 9.36 22.48 0.21 0.14 16 22 C -0.04 -0.12 5.88 -20.04 -0.12 -0.24 16 23 C 0.21 1.25 7.94 137.38 1.09 2.34 16 24 N -0.30 -1.05 12.08 -52.13 -0.63 -1.68 16 25 N -0.20 0.13 7.90 37.02 0.29 0.43 16 26 N -0.06 -0.30 13.47 37.02 0.50 0.20 16 27 N -0.29 -2.35 12.23 -52.18 -0.64 -2.99 16 28 C -0.09 -0.04 9.70 22.48 0.22 0.17 16 29 C -0.12 0.35 10.03 22.24 0.22 0.58 16 30 C -0.09 0.37 8.60 22.31 0.19 0.57 16 31 C -0.13 0.83 7.29 31.12 0.23 1.05 16 32 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.07 0.04 8.04 -2.39 -0.02 0.02 16 34 H 0.08 0.65 5.87 -2.39 -0.01 0.63 16 35 H 0.15 -0.50 8.06 -2.91 -0.02 -0.52 16 36 H 0.09 -0.84 7.77 -2.39 -0.02 -0.86 16 37 H 0.08 -0.59 8.08 -2.39 -0.02 -0.61 16 38 H 0.08 -0.51 6.22 -2.39 -0.01 -0.53 16 39 H 0.08 -0.25 6.48 -2.38 -0.02 -0.26 16 40 H 0.37 -2.21 7.71 -74.06 -0.57 -2.78 16 41 H -0.29 -1.70 7.11 99.48 0.71 -1.00 16 42 H -0.26 -0.23 7.11 99.48 0.71 0.48 16 43 H 0.15 -0.87 3.52 -2.91 -0.01 -0.88 16 44 H 0.41 -2.85 6.77 -92.71 -0.63 -3.48 16 45 H 0.07 -0.12 8.14 -2.39 -0.02 -0.14 16 46 H 0.10 -0.58 6.30 -2.39 -0.02 -0.60 16 47 H 0.14 0.04 7.88 -2.91 -0.02 0.02 16 48 H 0.49 -5.01 8.96 -347.53 -3.12 -8.13 16 49 H 0.13 -0.08 7.88 -2.91 -0.02 -0.11 16 50 H 0.15 -1.08 8.06 -2.91 -0.02 -1.11 16 51 H 0.15 -1.17 6.65 -2.91 -0.02 -1.19 16 52 H 0.11 -0.80 7.72 -2.39 -0.02 -0.82 16 53 H 0.09 -0.67 8.14 -2.38 -0.02 -0.69 16 Total: 0.00 -23.29 429.95 -1.59 -24.88 By element: Atomic # 1 Polarization: -19.73 SS G_CDS: -3.25 Total: -22.99 kcal Atomic # 6 Polarization: 5.97 SS G_CDS: 4.31 Total: 10.29 kcal Atomic # 7 Polarization: -2.37 SS G_CDS: -2.79 Total: -5.16 kcal Atomic # 8 Polarization: -5.98 SS G_CDS: -1.94 Total: -7.91 kcal Atomic # 14 Polarization: -1.17 SS G_CDS: 2.07 Total: 0.89 kcal Total: -23.29 -1.59 -24.88 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_280130_17857610_17915580.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.675 kcal (2) G-P(sol) polarization free energy of solvation -23.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds