Wall clock time and date at job start Sat Mar 6 2021 03:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35968 * 116.99753 * 2 1 4 4 C 1.39449 * 120.11916 * 180.02562 * 3 2 1 5 5 O 1.34768 * 133.24954 * 0.02562 * 4 3 2 6 6 C 1.34921 * 110.84846 * 179.97438 * 5 4 3 7 7 C 1.46992 * 125.14146 * 179.97438 * 6 5 4 8 8 O 1.21655 * 119.99904 * 180.02562 * 7 6 5 9 9 N 1.34770 * 120.00009 * 0.02733 * 7 6 5 10 10 C 1.46509 * 119.99850 * 180.02562 * 9 7 6 11 11 H 1.09002 * 112.84690 * 23.79829 * 10 9 7 12 12 C 1.53780 * 113.61477 * 154.99687 * 10 9 7 13 13 C 1.53781 * 87.08188 * 89.11314 * 12 10 9 14 14 H 1.09002 * 113.61828 * 270.88369 * 13 12 10 15 15 C 1.50696 * 113.61424 * 140.06363 * 13 12 10 16 16 C 1.38004 * 119.94099 * 120.00537 * 15 13 12 17 17 C 1.39325 * 119.88326 * 180.02562 * 16 15 13 18 18 C 1.48456 * 120.11848 * 179.97438 * 17 16 15 19 19 N 1.31815 * 126.67376 * 179.70898 * 18 17 16 20 20 N 1.28872 * 107.81867 * 179.83953 * 19 18 17 21 21 N 1.28733 * 109.31532 * 0.43875 * 20 19 18 22 22 N 1.28985 * 108.94421 * 359.72885 * 21 20 19 23 23 C 1.39277 * 119.76425 * 359.97438 * 17 16 15 24 24 C 1.38052 * 119.88089 * 359.97438 * 23 17 16 25 25 C 1.38288 * 120.11584 * 359.72790 * 24 23 17 26 26 C 1.53778 * 113.61109 * 252.49231 * 10 9 7 27 27 C 1.35813 * 109.71772 * 359.76061 * 6 5 4 28 28 C 1.40610 * 119.13406 * 179.97438 * 4 3 2 29 29 C 1.39785 * 120.11908 * 359.97438 * 28 4 3 30 30 C 1.50705 * 120.09049 * 179.97438 * 29 28 4 31 31 O 1.42897 * 109.47195 * 74.99766 * 30 29 28 32 32 Si 1.86295 * 109.46671 * 195.00062 * 30 29 28 33 33 C 1.36624 * 119.81253 * 359.97438 * 29 28 4 34 34 C 1.38263 * 120.11986 * 0.02562 * 3 2 1 35 35 H 1.09000 * 109.46914 * 179.97438 * 1 2 3 36 36 H 1.08990 * 109.47530 * 300.00032 * 1 2 3 37 37 H 1.09000 * 109.46819 * 60.00397 * 1 2 3 38 38 H 0.97001 * 120.00581 * 359.97438 * 9 7 6 39 39 H 1.08996 * 113.61462 * 203.66382 * 12 10 9 40 40 H 1.09003 * 113.61273 * 334.57218 * 12 10 9 41 41 H 1.08006 * 120.05969 * 359.97160 * 16 15 13 42 42 H 0.97004 * 125.34586 * 180.16836 * 20 19 18 43 43 H 1.08003 * 120.06492 * 179.97438 * 23 17 16 44 44 H 1.08007 * 119.93930 * 179.97438 * 24 23 17 45 45 H 1.08004 * 119.88267 * 180.27618 * 25 24 23 46 46 H 1.09003 * 113.61407 * 25.43435 * 26 10 9 47 47 H 1.09005 * 113.61012 * 156.33230 * 26 10 9 48 48 H 1.07997 * 126.95946 * 180.29729 * 27 6 5 49 49 H 1.09000 * 109.46772 * 314.99942 * 30 29 28 50 50 H 0.96696 * 114.00070 * 179.97438 * 31 30 29 51 51 H 1.48492 * 110.00216 * 299.99760 * 32 30 29 52 52 H 1.48504 * 110.00165 * 61.31934 * 32 30 29 53 53 H 1.08000 * 119.74977 * 179.97438 * 33 29 28 54 54 H 1.08000 * 119.66168 * 0.02562 * 34 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 3.4387 1.2875 -0.0005 5 8 4.4142 0.3576 -0.0016 6 6 5.6317 0.9389 -0.0023 7 6 6.9131 0.2188 -0.0029 8 8 7.9596 0.8392 -0.0030 9 7 6.9287 -1.1289 -0.0034 10 6 8.2060 -1.8466 -0.0034 11 1 9.0251 -1.2528 0.4022 12 6 8.1173 -3.2618 0.5916 13 6 7.7809 -3.7520 -0.8266 14 1 6.7144 -3.7389 -1.0516 15 6 8.4386 -5.0595 -1.1853 16 6 7.6636 -6.1522 -1.5171 17 6 8.2730 -7.3606 -1.8480 18 6 7.4444 -8.5395 -2.2053 19 7 7.8819 -9.7363 -2.5426 20 7 6.8557 -10.4805 -2.7745 21 7 5.7822 -9.7907 -2.6038 22 7 6.1058 -8.5923 -2.2534 23 6 9.6623 -7.4587 -1.8425 24 6 10.4281 -6.3593 -1.5100 25 6 9.8183 -5.1605 -1.1884 26 6 8.5355 -2.5174 -1.3474 27 6 5.4943 2.2901 -0.0071 28 6 4.0553 2.5511 -0.0011 29 6 3.2763 3.7118 -0.0016 30 6 3.9380 5.0658 -0.0016 31 8 4.4609 5.3405 -1.3028 32 14 2.6860 6.3686 0.4523 33 6 1.9135 3.6151 -0.0021 34 6 1.2956 2.3726 0.0005 35 1 -0.3633 -1.0277 -0.0005 36 1 -0.3634 0.5138 0.8899 37 1 -0.3633 0.5138 -0.8900 38 1 6.0944 -1.6236 -0.0029 39 1 9.0685 -3.6371 0.9691 40 1 7.3000 -3.3864 1.3019 41 1 6.5866 -6.0709 -1.5195 42 1 6.8872 -11.4129 -3.0402 43 1 10.1397 -8.3933 -2.0978 44 1 11.5055 -6.4344 -1.5050 45 1 10.4212 -4.3015 -0.9332 46 1 8.0558 -2.0410 -2.2024 47 1 9.6010 -2.6892 -1.5000 48 1 6.2872 3.0233 -0.0132 49 1 4.7501 5.0733 0.7254 50 1 4.9016 6.1980 -1.3766 51 1 1.5735 6.3685 -0.5313 52 1 2.1579 6.1122 1.8164 53 1 1.3126 4.5125 -0.0021 54 1 0.2173 2.3119 0.0014 There are 81 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 81 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_280130_17857610_17934800.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 03:31:50 Heat of formation + Delta-G solvation = 120.170556 kcal Electronic energy + Delta-G solvation = -42210.804603 eV Core-core repulsion = 36699.644628 eV Total energy + Delta-G solvation = -5511.159975 eV No. of doubly occupied orbitals = 81 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 448.163 amu Computer time = 2.47 seconds Orbital eigenvalues (eV) -45.52109 -43.86384 -41.65900 -40.84337 -40.31689 -39.05153 -38.92257 -37.11595 -35.51810 -35.02973 -34.33929 -33.76081 -32.23833 -31.99468 -31.48955 -30.97942 -28.68461 -26.77765 -26.71101 -26.25579 -25.75805 -25.53064 -24.76120 -24.15609 -23.07929 -22.29162 -22.02410 -21.77177 -20.47617 -19.96767 -19.82483 -19.01878 -18.55050 -18.43016 -18.20579 -18.02238 -17.80569 -17.20673 -17.13341 -16.69632 -16.57614 -16.41288 -16.31119 -15.93751 -15.76263 -15.51854 -15.45399 -15.12036 -14.88087 -14.67893 -14.57934 -14.43164 -14.33061 -14.22291 -14.14972 -14.00438 -13.52727 -13.47491 -13.42490 -13.34139 -13.21212 -12.86155 -12.60178 -12.48968 -12.46494 -12.44095 -12.27104 -12.14110 -12.10033 -11.92415 -11.84135 -11.61851 -11.58214 -11.25499 -11.11775 -10.33746 -10.29392 -9.96003 -9.78398 -9.56657 -9.13959 -4.92261 -0.77781 -0.31000 -0.07861 0.12388 0.38387 0.51404 1.07963 1.28395 1.29172 1.36665 1.67402 1.81340 1.83346 1.95341 2.01059 2.22513 2.62550 2.76714 3.06589 3.11133 3.31377 3.42308 3.43550 3.63042 3.66336 3.69809 3.71363 3.85729 3.92367 3.96926 4.00628 4.04005 4.08883 4.18582 4.20018 4.22997 4.30206 4.32387 4.33982 4.36981 4.42120 4.55724 4.61307 4.65274 4.70977 4.72314 4.79167 4.82095 4.84265 4.90131 4.98697 5.03859 5.05752 5.07071 5.10380 5.17864 5.38744 5.42983 5.47453 5.50363 5.55402 5.65958 5.94180 6.08102 6.21573 6.77929 6.90654 7.05293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.328 6.328 3 C 0.140 3.860 4 C 0.025 3.975 5 O -0.178 6.178 6 C -0.033 4.033 7 C 0.608 3.392 8 O -0.538 6.538 9 N -0.688 5.688 10 C 0.111 3.889 11 H 0.104 0.896 12 C -0.123 4.123 13 C -0.071 4.071 14 H 0.100 0.900 15 C -0.073 4.073 16 C -0.083 4.083 17 C -0.036 4.036 18 C 0.208 3.792 19 N -0.297 5.297 20 N -0.202 5.202 21 N -0.060 5.060 22 N -0.296 5.296 23 C -0.090 4.090 24 C -0.117 4.117 25 C -0.093 4.093 26 C -0.139 4.139 27 C -0.105 4.105 28 C -0.098 4.098 29 C -0.069 4.069 30 C -0.085 4.085 31 O -0.562 6.562 32 Si 0.782 3.218 33 C -0.106 4.106 34 C -0.171 4.171 35 H 0.121 0.879 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.416 0.584 39 H 0.116 0.884 40 H 0.082 0.918 41 H 0.128 0.872 42 H 0.494 0.506 43 H 0.136 0.864 44 H 0.154 0.846 45 H 0.152 0.848 46 H 0.066 0.934 47 H 0.113 0.887 48 H 0.183 0.817 49 H 0.087 0.913 50 H 0.403 0.597 51 H -0.281 1.281 52 H -0.285 1.285 53 H 0.144 0.856 54 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.117 1.126 1.426 1.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.242 6.242 3 C 0.093 3.907 4 C -0.024 4.024 5 O -0.080 6.080 6 C -0.083 4.083 7 C 0.394 3.606 8 O -0.417 6.417 9 N -0.338 5.338 10 C 0.006 3.994 11 H 0.122 0.878 12 C -0.161 4.161 13 C -0.090 4.090 14 H 0.118 0.882 15 C -0.073 4.073 16 C -0.103 4.103 17 C -0.039 4.039 18 C -0.072 4.072 19 N -0.149 5.149 20 N -0.053 5.053 21 N -0.055 5.055 22 N -0.169 5.169 23 C -0.110 4.110 24 C -0.135 4.135 25 C -0.111 4.111 26 C -0.177 4.177 27 C -0.126 4.126 28 C -0.099 4.099 29 C -0.069 4.069 30 C -0.194 4.194 31 O -0.373 6.373 32 Si 0.686 3.314 33 C -0.124 4.124 34 C -0.189 4.189 35 H 0.139 0.861 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.253 0.747 39 H 0.134 0.866 40 H 0.101 0.899 41 H 0.146 0.854 42 H 0.353 0.647 43 H 0.154 0.846 44 H 0.172 0.828 45 H 0.170 0.830 46 H 0.084 0.916 47 H 0.132 0.868 48 H 0.200 0.800 49 H 0.105 0.895 50 H 0.255 0.745 51 H -0.209 1.209 52 H -0.212 1.212 53 H 0.161 0.839 54 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -0.752 0.254 1.411 1.619 hybrid contribution -0.367 -1.390 -0.315 1.471 sum -1.119 -1.136 1.096 1.935 Atomic orbital electron populations 1.23498 0.75341 1.06232 1.02958 1.86152 1.24284 1.25390 1.88368 1.17882 0.86319 0.86618 0.99839 1.19139 0.88168 0.87242 1.07828 1.84015 1.12758 1.34845 1.76389 1.22064 0.83998 0.92826 1.09398 1.16546 0.84784 0.82708 0.76611 1.90890 1.31038 1.68109 1.51622 1.45573 1.10841 1.04796 1.72601 1.22078 0.85604 0.93256 0.98413 0.87758 1.23418 1.04570 0.92301 0.95766 1.21598 0.99954 0.90325 0.97083 0.88198 1.19664 0.93815 0.94424 0.99375 1.21112 1.00590 0.91187 0.97448 1.17373 0.92073 0.88918 1.05552 1.24041 0.89079 0.93103 1.00961 1.74892 1.15972 1.03616 1.20448 1.47821 0.99936 1.15854 1.41672 1.78881 1.13743 0.98821 1.14014 1.76071 1.12401 1.10302 1.18094 1.21331 0.91425 1.00331 0.97912 1.21390 1.01389 0.91946 0.98749 1.21503 0.93933 0.98617 0.97094 1.23594 1.02461 0.94847 0.96779 1.22878 0.94763 0.94590 1.00335 1.19621 0.93060 0.92396 1.04796 1.18883 0.92780 0.93385 1.01883 1.24957 1.06390 0.98685 0.89363 1.86468 1.78336 1.43820 1.28629 0.94054 0.76628 0.84563 0.76154 1.20680 0.93537 0.98228 0.99961 1.21268 1.01743 0.89647 1.06273 0.86121 0.90792 0.90982 0.74728 0.86612 0.89934 0.85382 0.64713 0.84603 0.82803 0.83017 0.91569 0.86836 0.79952 0.89507 0.74542 1.20863 1.21216 0.83887 0.80642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.05 9.81 113.37 1.11 1.06 16 2 O -0.33 -1.88 10.50 -93.19 -0.98 -2.86 16 3 C 0.14 1.02 6.70 22.57 0.15 1.18 16 4 C 0.02 0.26 7.35 23.14 0.17 0.43 16 5 O -0.18 -1.77 10.28 -13.25 -0.14 -1.91 16 6 C -0.03 -0.29 7.07 24.00 0.17 -0.12 16 7 C 0.61 4.69 7.80 86.54 0.67 5.37 16 8 O -0.54 -6.88 16.42 -4.20 -0.07 -6.95 16 9 N -0.69 -1.20 5.26 -443.70 -2.33 -3.53 16 10 C 0.11 -0.15 4.32 45.51 0.20 0.05 16 11 H 0.10 0.06 7.46 -2.39 -0.02 0.05 16 12 C -0.12 0.59 7.29 31.12 0.23 0.82 16 13 C -0.07 0.23 3.85 -11.02 -0.04 0.19 16 14 H 0.10 -0.29 8.09 -2.39 -0.02 -0.31 16 15 C -0.07 0.07 5.28 -19.90 -0.11 -0.03 16 16 C -0.08 -0.24 9.36 22.48 0.21 -0.03 16 17 C -0.04 -0.16 5.88 -20.04 -0.12 -0.28 16 18 C 0.21 1.49 7.94 137.38 1.09 2.58 16 19 N -0.30 -1.25 12.08 -52.13 -0.63 -1.88 16 20 N -0.20 -0.01 7.90 37.02 0.29 0.28 16 21 N -0.06 -0.37 13.47 37.02 0.50 0.13 16 22 N -0.30 -2.81 12.23 -52.18 -0.64 -3.45 16 23 C -0.09 -0.09 9.70 22.48 0.22 0.13 16 24 C -0.12 0.32 10.03 22.24 0.22 0.54 16 25 C -0.09 0.32 8.62 22.31 0.19 0.51 16 26 C -0.14 0.38 7.25 31.12 0.23 0.61 16 27 C -0.11 -0.90 10.68 23.79 0.25 -0.65 16 28 C -0.10 -0.93 6.16 -20.24 -0.12 -1.05 16 29 C -0.07 -0.47 5.30 -19.87 -0.11 -0.57 16 30 C -0.09 -0.07 2.70 71.24 0.19 0.12 16 31 O -0.56 -0.68 12.86 -148.98 -1.92 -2.60 16 32 Si 0.78 -2.34 30.20 68.60 2.07 -0.27 16 33 C -0.11 -0.51 8.62 22.02 0.19 -0.32 16 34 C -0.17 -0.55 9.03 22.40 0.20 -0.35 16 35 H 0.12 -0.80 8.14 -2.39 -0.02 -0.82 16 36 H 0.07 -0.47 7.66 -2.39 -0.02 -0.49 16 37 H 0.07 -0.43 7.66 -2.39 -0.02 -0.44 16 38 H 0.42 -0.34 8.42 -92.71 -0.78 -1.12 16 39 H 0.12 -0.82 7.73 -2.39 -0.02 -0.83 16 40 H 0.08 -0.39 8.14 -2.39 -0.02 -0.41 16 41 H 0.13 0.45 7.88 -2.91 -0.02 0.43 16 42 H 0.49 -4.77 8.96 -347.53 -3.12 -7.89 16 43 H 0.14 -0.06 7.88 -2.91 -0.02 -0.08 16 44 H 0.15 -1.15 8.06 -2.91 -0.02 -1.18 16 45 H 0.15 -1.24 6.63 -2.91 -0.02 -1.26 16 46 H 0.07 0.01 8.14 -2.39 -0.02 -0.01 16 47 H 0.11 -0.63 6.30 -2.38 -0.02 -0.64 16 48 H 0.18 1.05 8.06 -2.91 -0.02 1.03 16 49 H 0.09 -0.18 7.96 -2.39 -0.02 -0.20 16 50 H 0.40 -3.87 8.74 -74.06 -0.65 -4.51 16 51 H -0.28 -0.64 6.75 99.48 0.67 0.03 16 52 H -0.29 -0.65 7.11 99.48 0.71 0.06 16 53 H 0.14 0.28 4.85 -2.91 -0.01 0.27 16 54 H 0.18 -0.64 6.26 -2.91 -0.02 -0.66 16 Total: 0.00 -29.75 458.84 -2.13 -31.87 By element: Atomic # 1 Polarization: -15.52 SS G_CDS: -3.49 Total: -19.01 kcal Atomic # 6 Polarization: 4.97 SS G_CDS: 5.20 Total: 10.18 kcal Atomic # 7 Polarization: -5.64 SS G_CDS: -2.81 Total: -8.45 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: -3.10 Total: -14.32 kcal Atomic # 14 Polarization: -2.34 SS G_CDS: 2.07 Total: -0.27 kcal Total: -29.75 -2.13 -31.87 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_280130_17857610_17934800.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.044 kcal (2) G-P(sol) polarization free energy of solvation -29.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.47 seconds