Wall clock time and date at job start Sat Mar 6 2021 03:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86295 * 109.47281 * 2 1 4 4 C 1.50708 * 109.46853 * 240.00200 * 2 1 3 5 5 C 1.36450 * 120.29604 * 239.99946 * 4 2 1 6 6 C 1.40087 * 119.25227 * 179.97438 * 5 4 2 7 7 C 1.40853 * 132.86281 * 180.02562 * 6 5 4 8 8 C 1.46565 * 126.58146 * 359.94996 * 7 6 5 9 9 O 1.21713 * 120.00225 * 359.73156 * 8 7 6 10 10 N 1.34784 * 120.00084 * 180.02562 * 8 7 6 11 11 C 1.46499 * 119.99893 * 179.72882 * 10 8 7 12 12 H 1.08994 * 112.85555 * 23.80061 * 11 10 8 13 13 C 1.53777 * 113.61200 * 155.00334 * 11 10 8 14 14 C 1.53781 * 87.08638 * 89.11383 * 13 11 10 15 15 H 1.09000 * 113.61111 * 270.88343 * 14 13 11 16 16 C 1.50696 * 113.61561 * 140.06379 * 14 13 11 17 17 C 1.38006 * 119.94029 * 120.00419 * 16 14 13 18 18 C 1.39318 * 119.88127 * 179.97438 * 17 16 14 19 19 C 1.48469 * 120.11622 * 179.97438 * 18 17 16 20 20 N 1.31812 * 126.66965 * 179.71057 * 19 18 17 21 21 N 1.28872 * 107.81366 * 179.84096 * 20 19 18 22 22 N 1.28728 * 109.31829 * 0.43666 * 21 20 19 23 23 N 1.28981 * 108.94256 * 359.73132 * 22 21 20 24 24 C 1.39280 * 119.76755 * 359.97438 * 18 17 16 25 25 C 1.38049 * 119.87863 * 359.97438 * 24 18 17 26 26 C 1.38301 * 120.11746 * 359.73015 * 25 24 18 27 27 C 1.53776 * 87.07882 * 25.42927 * 14 13 11 28 28 C 1.40559 * 106.83817 * 180.21607 * 7 6 5 29 29 N 1.30738 * 108.74257 * 359.58831 * 28 7 6 30 30 N 1.36573 * 120.23076 * 359.97438 * 6 5 4 31 31 C 1.36240 * 120.08296 * 0.02719 * 30 6 5 32 32 C 1.35180 * 120.70477 * 359.97438 * 31 30 6 33 33 H 0.96697 * 114.00138 * 59.99384 * 1 2 3 34 34 H 1.08995 * 109.47087 * 120.00644 * 2 1 3 35 35 H 1.48504 * 109.99956 * 60.00464 * 3 2 1 36 36 H 1.48502 * 109.99965 * 181.32137 * 3 2 1 37 37 H 1.08002 * 120.37080 * 359.97438 * 5 4 2 38 38 H 0.97005 * 119.99846 * 359.72670 * 10 8 7 39 39 H 1.09002 * 113.61299 * 203.66622 * 13 11 10 40 40 H 1.08999 * 113.61560 * 334.47421 * 13 11 10 41 41 H 1.08004 * 120.06181 * 0.02562 * 17 16 14 42 42 H 0.97001 * 125.34143 * 180.16866 * 21 20 19 43 43 H 1.07997 * 120.06318 * 179.97438 * 24 18 17 44 44 H 1.07998 * 119.93871 * 180.02562 * 25 24 18 45 45 H 1.08001 * 119.87883 * 180.27316 * 26 25 24 46 46 H 1.08998 * 113.61700 * 220.02123 * 27 14 13 47 47 H 1.09006 * 113.61624 * 89.11539 * 27 14 13 48 48 H 1.08007 * 125.62437 * 179.71921 * 28 7 6 49 49 H 1.08004 * 119.64655 * 180.02562 * 31 30 6 50 50 H 1.08006 * 119.84460 * 180.02562 * 32 31 30 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2306 5 6 2.7161 -1.8204 -1.1125 6 6 3.1705 -2.4639 -2.2709 7 6 3.9739 -3.6012 -2.4826 8 6 4.5753 -4.4503 -1.4503 9 8 4.4013 -4.1933 -0.2734 10 7 5.3260 -5.5123 -1.8043 11 6 5.9320 -6.3575 -0.7725 12 1 5.4049 -6.3062 0.1802 13 6 6.2173 -7.7938 -1.2420 14 6 7.5917 -7.2848 -1.7076 15 1 7.5945 -6.9095 -2.7310 16 6 8.7168 -8.2496 -1.4351 17 6 9.4677 -8.7453 -2.4814 18 6 10.5079 -9.6368 -2.2280 19 6 11.3188 -10.1738 -3.3498 20 7 12.3297 -11.0147 -3.2584 21 7 12.7647 -11.2394 -4.4505 22 7 12.0675 -10.5606 -5.2932 23 7 11.1690 -9.8933 -4.6519 24 6 10.7845 -10.0225 -0.9186 25 6 10.0278 -9.5197 0.1208 26 6 9.0003 -8.6303 -0.1358 27 6 7.4543 -6.1801 -0.6467 28 6 4.0934 -3.7621 -3.8738 29 7 3.4159 -2.8137 -4.4661 30 7 2.8295 -1.9835 -3.5030 31 6 2.0454 -0.8746 -3.6107 32 6 1.5956 -0.2374 -2.5065 33 1 -0.3933 0.4418 -0.7650 34 1 1.7923 -0.5139 0.8899 35 1 1.5616 2.4678 1.2086 36 1 3.5347 1.7702 -0.0322 37 1 2.9840 -2.1984 -0.1369 38 1 5.4649 -5.7170 -2.7423 39 1 6.2722 -8.5165 -0.4279 40 1 5.5729 -8.1228 -2.0572 41 1 9.2500 -8.4422 -3.4949 42 1 13.5042 -11.8249 -4.6769 43 1 11.5895 -10.7136 -0.7167 44 1 10.2417 -9.8178 1.1366 45 1 8.4136 -8.2359 0.6807 46 1 7.8096 -5.2058 -0.9823 47 1 7.8474 -6.4616 0.3302 48 1 4.6510 -4.5419 -4.3714 49 1 1.7797 -0.5010 -4.5886 50 1 0.9745 0.6403 -2.6080 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_280130_17857610_17938718.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 03:32:05 Heat of formation + Delta-G solvation = 222.194920 kcal Electronic energy + Delta-G solvation = -37277.407407 eV Core-core repulsion = 32277.184103 eV Total energy + Delta-G solvation = -5000.223304 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 418.154 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -45.39411 -43.29976 -41.49715 -40.16230 -39.39130 -38.65421 -37.26737 -35.37717 -34.78216 -34.27443 -34.02301 -32.13142 -32.04684 -31.41172 -30.21160 -27.41387 -26.75021 -26.39333 -25.56965 -25.42165 -24.91924 -23.78935 -23.08896 -23.06586 -22.06223 -21.30817 -20.38383 -19.78809 -19.15075 -18.54869 -18.09050 -18.07642 -17.87398 -17.44197 -16.95317 -16.94863 -16.56828 -16.52895 -16.20482 -15.89710 -15.71648 -15.45463 -15.39563 -15.14305 -14.92922 -14.62971 -14.55262 -14.41478 -14.23007 -14.16320 -14.02316 -13.57150 -13.52373 -13.34108 -13.29151 -13.17991 -12.85331 -12.49738 -12.42416 -12.32235 -12.17360 -12.12612 -12.00481 -11.95815 -11.77783 -11.60026 -11.51087 -11.24365 -10.82166 -10.76666 -10.33321 -9.99223 -9.79340 -9.56684 -8.77376 -5.18766 -0.56580 -0.26072 -0.15308 0.24797 0.36329 0.99829 1.06706 1.12472 1.30031 1.39185 1.57223 1.87163 2.05614 2.22638 2.58931 2.70294 2.76158 3.05385 3.16776 3.21981 3.33106 3.43143 3.45160 3.64377 3.67730 3.72451 3.84199 3.87116 3.96367 3.98593 4.07983 4.12132 4.15201 4.23052 4.24117 4.33368 4.41726 4.46429 4.49460 4.57310 4.66219 4.70048 4.71310 4.83989 4.87978 4.95656 5.01555 5.04469 5.06888 5.12892 5.16694 5.26190 5.37107 5.44303 5.47421 5.56252 5.63660 5.69315 5.89034 6.30865 6.37255 6.62006 7.19764 7.40374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.532 6.532 2 C -0.068 4.068 3 Si 0.698 3.302 4 C -0.068 4.068 5 C -0.096 4.096 6 C 0.170 3.830 7 C -0.317 4.317 8 C 0.605 3.395 9 O -0.548 6.548 10 N -0.712 5.712 11 C 0.124 3.876 12 H 0.106 0.894 13 C -0.136 4.136 14 C -0.073 4.073 15 H 0.100 0.900 16 C -0.072 4.072 17 C -0.072 4.072 18 C -0.017 4.017 19 C 0.218 3.782 20 N -0.293 5.293 21 N -0.226 5.226 22 N -0.046 5.046 23 N -0.268 5.268 24 C -0.083 4.083 25 C -0.118 4.118 26 C -0.095 4.095 27 C -0.145 4.145 28 C 0.121 3.879 29 N -0.312 5.312 30 N -0.267 5.267 31 C 0.122 3.878 32 C -0.157 4.157 33 H 0.378 0.622 34 H 0.123 0.877 35 H -0.246 1.246 36 H -0.254 1.254 37 H 0.161 0.839 38 H 0.399 0.601 39 H 0.099 0.901 40 H 0.078 0.922 41 H 0.135 0.865 42 H 0.477 0.523 43 H 0.132 0.868 44 H 0.131 0.869 45 H 0.130 0.870 46 H 0.075 0.925 47 H 0.095 0.905 48 H 0.199 0.801 49 H 0.179 0.821 50 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.327 1.343 -1.921 2.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.337 6.337 2 C -0.178 4.178 3 Si 0.597 3.403 4 C -0.074 4.074 5 C -0.116 4.116 6 C 0.049 3.951 7 C -0.332 4.332 8 C 0.394 3.606 9 O -0.427 6.427 10 N -0.363 5.363 11 C 0.018 3.982 12 H 0.124 0.876 13 C -0.174 4.174 14 C -0.092 4.092 15 H 0.118 0.882 16 C -0.072 4.072 17 C -0.092 4.092 18 C -0.020 4.020 19 C -0.062 4.062 20 N -0.145 5.145 21 N -0.072 5.072 22 N -0.042 5.042 23 N -0.141 5.141 24 C -0.104 4.104 25 C -0.136 4.136 26 C -0.114 4.114 27 C -0.183 4.183 28 C -0.060 4.060 29 N -0.132 5.132 30 N -0.031 5.031 31 C -0.004 4.004 32 C -0.179 4.179 33 H 0.226 0.774 34 H 0.140 0.860 35 H -0.171 1.171 36 H -0.179 1.179 37 H 0.179 0.821 38 H 0.233 0.767 39 H 0.117 0.883 40 H 0.097 0.903 41 H 0.153 0.847 42 H 0.331 0.669 43 H 0.150 0.850 44 H 0.149 0.851 45 H 0.147 0.853 46 H 0.094 0.906 47 H 0.114 0.886 48 H 0.215 0.785 49 H 0.197 0.803 50 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 0.006 2.145 -1.989 2.926 hybrid contribution 1.030 -1.619 0.488 1.980 sum 1.036 0.526 -1.501 1.898 Atomic orbital electron populations 1.86609 1.16316 1.81650 1.49093 1.25165 0.85586 1.10320 0.96733 0.95011 0.81496 0.75993 0.87767 1.20509 0.95956 0.94983 0.95922 1.20705 0.98277 0.94497 0.98117 1.19257 0.95592 0.94044 0.86199 1.19601 1.16257 1.03755 0.93567 1.16813 0.77092 0.79413 0.87293 1.90783 1.61720 1.71581 1.18588 1.45362 1.52340 1.28971 1.09578 1.21795 0.93625 0.89957 0.92814 0.87568 1.23441 0.95628 0.96111 1.02216 1.21608 0.92438 0.94899 1.00216 0.88160 1.19591 0.96800 0.98011 0.92825 1.21062 0.93226 0.95001 0.99890 1.17204 0.96086 0.99893 0.88821 1.23733 0.94164 0.95790 0.92521 1.74927 1.14057 1.19325 1.06182 1.47761 1.26273 1.31928 1.01253 1.78951 1.01401 1.03965 1.19836 1.76090 1.16043 1.18731 1.03274 1.21187 0.99327 0.98921 0.90931 1.21100 0.95745 0.97518 0.99242 1.21226 0.97094 0.96590 0.96481 1.23588 0.96146 0.99037 0.99541 1.24075 0.94263 0.95760 0.91932 1.77643 1.18380 1.06507 1.10684 1.46099 1.32171 1.19043 1.05770 1.21599 0.91791 0.85061 1.01933 1.20718 1.04212 1.02691 0.90230 0.77413 0.85974 1.17050 1.17864 0.82137 0.76653 0.88288 0.90331 0.84699 0.66851 0.84991 0.85064 0.85266 0.90583 0.88623 0.78458 0.80339 0.81574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 0.62 12.88 -35.23 -0.45 0.17 16 2 C -0.07 0.10 2.84 36.01 0.10 0.20 16 3 Si 0.70 -1.61 31.96 -169.99 -5.43 -7.04 16 4 C -0.07 0.05 4.53 -104.54 -0.47 -0.42 16 5 C -0.10 -0.19 9.35 -39.53 -0.37 -0.56 16 6 C 0.17 0.49 6.76 -84.07 -0.57 -0.08 16 7 C -0.32 -0.80 6.17 -104.68 -0.65 -1.45 16 8 C 0.60 1.85 7.78 -12.90 -0.10 1.75 16 9 O -0.55 -3.49 15.30 5.18 0.08 -3.41 16 10 N -0.71 0.20 5.25 -54.36 -0.29 -0.08 16 11 C 0.12 -0.07 4.33 -67.12 -0.29 -0.36 16 12 H 0.11 0.12 7.46 -51.93 -0.39 -0.27 16 13 C -0.14 0.30 7.29 -25.92 -0.19 0.11 16 14 C -0.07 0.14 3.85 -90.96 -0.35 -0.21 16 15 H 0.10 -0.26 8.09 -51.93 -0.42 -0.68 16 16 C -0.07 0.04 5.28 -104.67 -0.55 -0.51 16 17 C -0.07 -0.05 9.36 -39.26 -0.37 -0.42 16 18 C -0.02 -0.03 5.88 -104.89 -0.62 -0.64 16 19 C 0.22 0.62 7.94 -156.31 -1.24 -0.62 16 20 N -0.29 -0.51 12.08 32.17 0.39 -0.12 16 21 N -0.23 0.06 7.90 60.35 0.48 0.54 16 22 N -0.05 -0.11 13.47 60.35 0.81 0.70 16 23 N -0.27 -1.01 12.23 32.16 0.39 -0.62 16 24 C -0.08 -0.04 9.70 -39.26 -0.38 -0.42 16 25 C -0.12 0.09 10.03 -39.63 -0.40 -0.31 16 26 C -0.10 0.09 8.62 -39.52 -0.34 -0.25 16 27 C -0.14 0.17 7.25 -25.92 -0.19 -0.02 16 28 C 0.12 0.08 11.44 -17.14 -0.20 -0.12 16 29 N -0.31 -0.76 12.57 30.75 0.39 -0.37 16 30 N -0.27 -0.47 3.86 -10.55 -0.04 -0.51 16 31 C 0.12 -0.22 11.17 -16.68 -0.19 -0.40 16 32 C -0.16 0.53 8.38 -39.95 -0.33 0.20 16 33 H 0.38 -2.23 8.08 45.56 0.37 -1.86 16 34 H 0.12 -0.07 7.71 -51.93 -0.40 -0.47 16 35 H -0.25 -0.22 7.11 56.52 0.40 0.18 16 36 H -0.25 -0.27 7.11 56.52 0.40 0.13 16 37 H 0.16 0.44 7.01 -52.49 -0.37 0.07 16 38 H 0.40 -1.17 7.62 -40.82 -0.31 -1.48 16 39 H 0.10 -0.24 7.73 -51.93 -0.40 -0.64 16 40 H 0.08 -0.19 8.14 -51.93 -0.42 -0.62 16 41 H 0.14 0.04 7.88 -52.48 -0.41 -0.37 16 42 H 0.48 -2.34 8.96 -340.37 -3.05 -5.39 16 43 H 0.13 -0.03 7.88 -52.49 -0.41 -0.45 16 44 H 0.13 -0.34 8.06 -52.49 -0.42 -0.76 16 45 H 0.13 -0.34 6.63 -52.49 -0.35 -0.69 16 46 H 0.08 -0.01 8.14 -51.93 -0.42 -0.43 16 47 H 0.10 -0.17 6.30 -51.93 -0.33 -0.49 16 48 H 0.20 -0.70 7.46 -52.48 -0.39 -1.10 16 49 H 0.18 -0.86 8.06 -52.48 -0.42 -1.28 16 50 H 0.17 -1.33 7.31 -52.48 -0.38 -1.71 16 LS Contribution 428.21 15.07 6.45 6.45 Total: 0.00 -14.10 428.21 -13.05 -27.15 By element: Atomic # 1 Polarization: -10.18 SS G_CDS: -8.14 Total: -18.32 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: -7.69 Total: -4.54 kcal Atomic # 7 Polarization: -2.59 SS G_CDS: 2.13 Total: -0.46 kcal Atomic # 8 Polarization: -2.87 SS G_CDS: -0.37 Total: -3.24 kcal Atomic # 14 Polarization: -1.61 SS G_CDS: -5.43 Total: -7.04 kcal Total LS contribution 6.45 Total: 6.45 kcal Total: -14.10 -13.05 -27.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_280130_17857610_17938718.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 249.343 kcal (2) G-P(sol) polarization free energy of solvation -14.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 235.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 222.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds