Wall clock time and date at job start Sat Mar 6 2021 03:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86295 * 109.47281 * 2 1 4 4 C 1.50708 * 109.46853 * 240.00200 * 2 1 3 5 5 C 1.36450 * 120.29604 * 239.99946 * 4 2 1 6 6 C 1.40087 * 119.25227 * 179.97438 * 5 4 2 7 7 C 1.40853 * 132.86281 * 180.02562 * 6 5 4 8 8 C 1.46565 * 126.58146 * 359.94996 * 7 6 5 9 9 O 1.21713 * 120.00225 * 359.73156 * 8 7 6 10 10 N 1.34784 * 120.00084 * 180.02562 * 8 7 6 11 11 C 1.46499 * 119.99893 * 179.72882 * 10 8 7 12 12 H 1.08994 * 112.85555 * 23.80061 * 11 10 8 13 13 C 1.53777 * 113.61200 * 155.00334 * 11 10 8 14 14 C 1.53781 * 87.08638 * 89.11383 * 13 11 10 15 15 H 1.09000 * 113.61111 * 270.88343 * 14 13 11 16 16 C 1.50696 * 113.61561 * 140.06379 * 14 13 11 17 17 C 1.38006 * 119.94029 * 120.00419 * 16 14 13 18 18 C 1.39318 * 119.88127 * 179.97438 * 17 16 14 19 19 C 1.48469 * 120.11622 * 179.97438 * 18 17 16 20 20 N 1.31812 * 126.66965 * 179.71057 * 19 18 17 21 21 N 1.28872 * 107.81366 * 179.84096 * 20 19 18 22 22 N 1.28728 * 109.31829 * 0.43666 * 21 20 19 23 23 N 1.28981 * 108.94256 * 359.73132 * 22 21 20 24 24 C 1.39280 * 119.76755 * 359.97438 * 18 17 16 25 25 C 1.38049 * 119.87863 * 359.97438 * 24 18 17 26 26 C 1.38301 * 120.11746 * 359.73015 * 25 24 18 27 27 C 1.53776 * 87.07882 * 25.42927 * 14 13 11 28 28 C 1.40559 * 106.83817 * 180.21607 * 7 6 5 29 29 N 1.30738 * 108.74257 * 359.58831 * 28 7 6 30 30 N 1.36573 * 120.23076 * 359.97438 * 6 5 4 31 31 C 1.36240 * 120.08296 * 0.02719 * 30 6 5 32 32 C 1.35180 * 120.70477 * 359.97438 * 31 30 6 33 33 H 0.96697 * 114.00138 * 59.99384 * 1 2 3 34 34 H 1.08995 * 109.47087 * 120.00644 * 2 1 3 35 35 H 1.48504 * 109.99956 * 60.00464 * 3 2 1 36 36 H 1.48502 * 109.99965 * 181.32137 * 3 2 1 37 37 H 1.08002 * 120.37080 * 359.97438 * 5 4 2 38 38 H 0.97005 * 119.99846 * 359.72670 * 10 8 7 39 39 H 1.09002 * 113.61299 * 203.66622 * 13 11 10 40 40 H 1.08999 * 113.61560 * 334.47421 * 13 11 10 41 41 H 1.08004 * 120.06181 * 0.02562 * 17 16 14 42 42 H 0.97001 * 125.34143 * 180.16866 * 21 20 19 43 43 H 1.07997 * 120.06318 * 179.97438 * 24 18 17 44 44 H 1.07998 * 119.93871 * 180.02562 * 25 24 18 45 45 H 1.08001 * 119.87883 * 180.27316 * 26 25 24 46 46 H 1.08998 * 113.61700 * 220.02123 * 27 14 13 47 47 H 1.09006 * 113.61624 * 89.11539 * 27 14 13 48 48 H 1.08007 * 125.62437 * 179.71921 * 28 7 6 49 49 H 1.08004 * 119.64655 * 180.02562 * 31 30 6 50 50 H 1.08006 * 119.84460 * 180.02562 * 32 31 30 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2306 5 6 2.7161 -1.8204 -1.1125 6 6 3.1705 -2.4639 -2.2709 7 6 3.9739 -3.6012 -2.4826 8 6 4.5753 -4.4503 -1.4503 9 8 4.4013 -4.1933 -0.2734 10 7 5.3260 -5.5123 -1.8043 11 6 5.9320 -6.3575 -0.7725 12 1 5.4049 -6.3062 0.1802 13 6 6.2173 -7.7938 -1.2420 14 6 7.5917 -7.2848 -1.7076 15 1 7.5945 -6.9095 -2.7310 16 6 8.7168 -8.2496 -1.4351 17 6 9.4677 -8.7453 -2.4814 18 6 10.5079 -9.6368 -2.2280 19 6 11.3188 -10.1738 -3.3498 20 7 12.3297 -11.0147 -3.2584 21 7 12.7647 -11.2394 -4.4505 22 7 12.0675 -10.5606 -5.2932 23 7 11.1690 -9.8933 -4.6519 24 6 10.7845 -10.0225 -0.9186 25 6 10.0278 -9.5197 0.1208 26 6 9.0003 -8.6303 -0.1358 27 6 7.4543 -6.1801 -0.6467 28 6 4.0934 -3.7621 -3.8738 29 7 3.4159 -2.8137 -4.4661 30 7 2.8295 -1.9835 -3.5030 31 6 2.0454 -0.8746 -3.6107 32 6 1.5956 -0.2374 -2.5065 33 1 -0.3933 0.4418 -0.7650 34 1 1.7923 -0.5139 0.8899 35 1 1.5616 2.4678 1.2086 36 1 3.5347 1.7702 -0.0322 37 1 2.9840 -2.1984 -0.1369 38 1 5.4649 -5.7170 -2.7423 39 1 6.2722 -8.5165 -0.4279 40 1 5.5729 -8.1228 -2.0572 41 1 9.2500 -8.4422 -3.4949 42 1 13.5042 -11.8249 -4.6769 43 1 11.5895 -10.7136 -0.7167 44 1 10.2417 -9.8178 1.1366 45 1 8.4136 -8.2359 0.6807 46 1 7.8096 -5.2058 -0.9823 47 1 7.8474 -6.4616 0.3302 48 1 4.6510 -4.5419 -4.3714 49 1 1.7797 -0.5010 -4.5886 50 1 0.9745 0.6403 -2.6080 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_280130_17857610_17938718.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 03:32:03 Heat of formation + Delta-G solvation = 218.003556 kcal Electronic energy + Delta-G solvation = -37277.589158 eV Core-core repulsion = 32277.184103 eV Total energy + Delta-G solvation = -5000.405055 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 418.154 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -45.50447 -43.30106 -41.47797 -40.22478 -39.33469 -38.71557 -37.19606 -35.48083 -34.88175 -34.33092 -34.03748 -32.09527 -32.03599 -31.42598 -30.17952 -27.40322 -26.65629 -26.38460 -25.61562 -25.50583 -24.86312 -23.83490 -23.06410 -23.04207 -22.07114 -21.38192 -20.42057 -19.78820 -19.17387 -18.45743 -18.18768 -18.06065 -17.77596 -17.43329 -16.98440 -16.95615 -16.54609 -16.46381 -16.18785 -15.85967 -15.79095 -15.49060 -15.36110 -15.18043 -15.02613 -14.57255 -14.49252 -14.39695 -14.21791 -14.14709 -13.99886 -13.50033 -13.46712 -13.39075 -13.28877 -13.12589 -12.81986 -12.46087 -12.43884 -12.38874 -12.25242 -12.21885 -12.04979 -11.98933 -11.71543 -11.58024 -11.54004 -11.19323 -10.99006 -10.77766 -10.25359 -10.06903 -9.76985 -9.55154 -8.79514 -5.06759 -0.56123 -0.29688 -0.09633 0.14230 0.39858 1.01036 1.06377 1.21126 1.29892 1.38216 1.68395 1.96671 2.08555 2.20428 2.47623 2.64159 2.78042 3.09324 3.12838 3.24615 3.47293 3.51909 3.61346 3.73974 3.76099 3.77999 3.88811 3.94891 3.98843 4.05213 4.10214 4.20160 4.21859 4.26686 4.37076 4.38786 4.40010 4.43898 4.58533 4.62911 4.70962 4.79474 4.82540 4.88398 4.94561 5.03868 5.08208 5.09447 5.12111 5.17563 5.22887 5.29700 5.44150 5.48161 5.56554 5.58384 5.68720 5.72538 5.94897 6.29662 6.60043 6.77540 7.07166 7.29090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.546 6.546 2 C -0.076 4.076 3 Si 0.815 3.185 4 C -0.054 4.054 5 C -0.134 4.134 6 C 0.151 3.849 7 C -0.347 4.347 8 C 0.600 3.400 9 O -0.594 6.594 10 N -0.698 5.698 11 C 0.117 3.883 12 H 0.086 0.914 13 C -0.124 4.124 14 C -0.065 4.065 15 H 0.109 0.891 16 C -0.073 4.073 17 C -0.080 4.080 18 C -0.036 4.036 19 C 0.208 3.792 20 N -0.298 5.298 21 N -0.203 5.203 22 N -0.059 5.059 23 N -0.294 5.294 24 C -0.091 4.091 25 C -0.119 4.119 26 C -0.096 4.096 27 C -0.141 4.141 28 C 0.131 3.869 29 N -0.338 5.338 30 N -0.273 5.273 31 C 0.114 3.886 32 C -0.146 4.146 33 H 0.401 0.599 34 H 0.106 0.894 35 H -0.289 1.289 36 H -0.303 1.303 37 H 0.138 0.862 38 H 0.413 0.587 39 H 0.105 0.895 40 H 0.086 0.914 41 H 0.134 0.866 42 H 0.494 0.506 43 H 0.135 0.865 44 H 0.151 0.849 45 H 0.147 0.853 46 H 0.064 0.936 47 H 0.102 0.898 48 H 0.233 0.767 49 H 0.214 0.786 50 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.215 2.066 -3.040 3.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.355 6.355 2 C -0.184 4.184 3 Si 0.718 3.282 4 C -0.060 4.060 5 C -0.154 4.154 6 C 0.030 3.970 7 C -0.362 4.362 8 C 0.391 3.609 9 O -0.476 6.476 10 N -0.348 5.348 11 C 0.011 3.989 12 H 0.104 0.896 13 C -0.161 4.161 14 C -0.083 4.083 15 H 0.127 0.873 16 C -0.073 4.073 17 C -0.100 4.100 18 C -0.039 4.039 19 C -0.071 4.071 20 N -0.151 5.151 21 N -0.053 5.053 22 N -0.054 5.054 23 N -0.166 5.166 24 C -0.111 4.111 25 C -0.137 4.137 26 C -0.114 4.114 27 C -0.180 4.180 28 C -0.050 4.050 29 N -0.158 5.158 30 N -0.037 5.037 31 C -0.011 4.011 32 C -0.166 4.166 33 H 0.252 0.748 34 H 0.123 0.877 35 H -0.216 1.216 36 H -0.231 1.231 37 H 0.156 0.844 38 H 0.250 0.750 39 H 0.124 0.876 40 H 0.105 0.895 41 H 0.151 0.849 42 H 0.353 0.647 43 H 0.153 0.847 44 H 0.169 0.831 45 H 0.164 0.836 46 H 0.083 0.917 47 H 0.121 0.879 48 H 0.249 0.751 49 H 0.230 0.770 50 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -0.887 2.821 -3.185 4.346 hybrid contribution 1.292 -1.786 0.928 2.392 sum 0.405 1.035 -2.257 2.516 Atomic orbital electron populations 1.86585 1.15919 1.82272 1.50743 1.25324 0.85980 1.11163 0.95970 0.93872 0.76904 0.72318 0.85067 1.20775 0.94119 0.93541 0.97545 1.20642 1.00998 0.96573 0.97220 1.19471 0.96047 0.94582 0.86951 1.19707 1.17679 1.04490 0.94313 1.17034 0.77120 0.79925 0.86845 1.90747 1.63615 1.72917 1.20312 1.45246 1.51191 1.27913 1.10490 1.21834 0.93715 0.91156 0.92146 0.89606 1.23391 0.95279 0.94905 1.02568 1.21579 0.92124 0.94211 1.00427 0.87268 1.19703 0.96809 0.97951 0.92800 1.21127 0.93419 0.95224 1.00248 1.17378 0.96684 1.00781 0.89040 1.24022 0.94521 0.95977 0.92625 1.74897 1.14029 1.19361 1.06774 1.47817 1.25958 1.31069 1.00488 1.78878 1.01791 1.04522 1.20223 1.76058 1.16957 1.19754 1.03862 1.21313 0.99743 0.99190 0.90826 1.21363 0.95317 0.97089 0.99887 1.21486 0.97008 0.96150 0.96795 1.23574 0.95406 0.98787 1.00210 1.24572 0.93473 0.95836 0.91101 1.77556 1.19486 1.07370 1.11403 1.46383 1.32491 1.19764 1.05063 1.22474 0.90628 0.83895 1.04098 1.21360 1.03470 1.03590 0.88200 0.74798 0.87671 1.21618 1.23116 0.84445 0.74997 0.87618 0.89515 0.84852 0.64742 0.84676 0.83097 0.83567 0.91711 0.87948 0.75119 0.76970 0.76102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 1.85 12.88 -148.98 -1.92 -0.07 16 2 C -0.08 0.20 2.84 71.24 0.20 0.40 16 3 Si 0.81 -4.12 31.96 68.60 2.19 -1.93 16 4 C -0.05 0.07 4.53 -19.81 -0.09 -0.02 16 5 C -0.13 -0.86 9.35 22.30 0.21 -0.66 16 6 C 0.15 1.17 6.76 39.49 0.27 1.44 16 7 C -0.35 -2.49 6.17 -19.90 -0.12 -2.61 16 8 C 0.60 5.26 7.78 86.41 0.67 5.93 16 9 O -0.59 -9.86 15.30 -4.39 -0.07 -9.92 16 10 N -0.70 -0.57 5.25 -444.09 -2.33 -2.90 16 11 C 0.12 0.00 4.33 45.52 0.20 0.20 16 12 H 0.09 0.39 7.46 -2.39 -0.02 0.37 16 13 C -0.12 0.55 7.29 31.12 0.23 0.78 16 14 C -0.07 0.25 3.85 -11.02 -0.04 0.21 16 15 H 0.11 -0.60 8.09 -2.39 -0.02 -0.62 16 16 C -0.07 0.08 5.28 -19.90 -0.11 -0.02 16 17 C -0.08 -0.17 9.36 22.47 0.21 0.04 16 18 C -0.04 -0.15 5.88 -20.04 -0.12 -0.26 16 19 C 0.21 1.38 7.94 137.38 1.09 2.47 16 20 N -0.30 -1.16 12.08 -52.13 -0.63 -1.79 16 21 N -0.20 0.07 7.90 37.02 0.29 0.36 16 22 N -0.06 -0.32 13.47 37.02 0.50 0.18 16 23 N -0.29 -2.52 12.23 -52.18 -0.64 -3.16 16 24 C -0.09 -0.11 9.70 22.48 0.22 0.11 16 25 C -0.12 0.23 10.03 22.24 0.22 0.46 16 26 C -0.10 0.24 8.62 22.31 0.19 0.43 16 27 C -0.14 0.24 7.25 31.12 0.23 0.46 16 28 C 0.13 0.26 11.44 85.42 0.98 1.24 16 29 N -0.34 -1.72 12.57 -56.61 -0.71 -2.43 16 30 N -0.27 -1.05 3.86 -187.29 -0.72 -1.77 16 31 C 0.11 -0.59 11.17 83.30 0.93 0.34 16 32 C -0.15 1.29 8.38 22.03 0.18 1.48 16 33 H 0.40 -5.81 8.08 -74.06 -0.60 -6.40 16 34 H 0.11 0.09 7.71 -2.39 -0.02 0.07 16 35 H -0.29 -0.60 7.11 99.48 0.71 0.11 16 36 H -0.30 -0.95 7.11 99.48 0.71 -0.25 16 37 H 0.14 1.40 7.01 -2.91 -0.02 1.38 16 38 H 0.41 -2.25 7.62 -92.70 -0.71 -2.95 16 39 H 0.11 -0.57 7.73 -2.39 -0.02 -0.59 16 40 H 0.09 -0.49 8.14 -2.39 -0.02 -0.51 16 41 H 0.13 0.23 7.88 -2.91 -0.02 0.20 16 42 H 0.49 -4.92 8.96 -347.54 -3.12 -8.03 16 43 H 0.14 -0.02 7.88 -2.91 -0.02 -0.04 16 44 H 0.15 -0.96 8.06 -2.91 -0.02 -0.99 16 45 H 0.15 -0.91 6.63 -2.91 -0.02 -0.93 16 46 H 0.06 0.06 8.14 -2.39 -0.02 0.04 16 47 H 0.10 -0.32 6.30 -2.38 -0.02 -0.34 16 48 H 0.23 -1.74 7.46 -2.91 -0.02 -1.76 16 49 H 0.21 -2.69 8.06 -2.91 -0.02 -2.71 16 50 H 0.22 -4.59 7.31 -2.91 -0.02 -4.61 16 Total: 0.00 -37.78 428.21 -1.80 -39.58 By element: Atomic # 1 Polarization: -25.24 SS G_CDS: -3.31 Total: -28.55 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: 5.55 Total: 12.42 kcal Atomic # 7 Polarization: -7.28 SS G_CDS: -4.24 Total: -11.52 kcal Atomic # 8 Polarization: -8.01 SS G_CDS: -1.99 Total: -9.99 kcal Atomic # 14 Polarization: -4.12 SS G_CDS: 2.19 Total: -1.93 kcal Total: -37.78 -1.80 -39.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_280130_17857610_17938718.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 257.580 kcal (2) G-P(sol) polarization free energy of solvation -37.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 219.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 218.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds